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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NRBP2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
122.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
93.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
81.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
75.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
74.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
64.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
64.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
62.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
62.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
55.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
54.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
52.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
50.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
50.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
50.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
49.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
49.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
48.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
47.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
47.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
46.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
46.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
45.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
43.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
43.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
43.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
41.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
40.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
39.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
38.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
38.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
37.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
36.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
36.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
36.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
36.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
35.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
34.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
34.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
34.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
34.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
33.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
32.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
32.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
31.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
30.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
30.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
29.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
29.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
29.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
28.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
28.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
27.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
27.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
27.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
27.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
27.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
27.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
27.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
26.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
26.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
26.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
26.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
25.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
25.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
24.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
24.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
24.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
23.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
23.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
23.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
23.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
23.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
22.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
22.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
22.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
22.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
22.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
22.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
21.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
21.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
21.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
21.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
21.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
21.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
21.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
21.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
21.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
21.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
21.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
21.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
20.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
20.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
20.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
20.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
20.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
20.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
20.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
20.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
20.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
20.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
19.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
19.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
19.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
19.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
19.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
19.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
19.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
19.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
19.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
19.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
18.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
18.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
18.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
18.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
18.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
18.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
18.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
18.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
18.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
18.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
18.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
18.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
17.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
17.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
17.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
17.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
17.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
17.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
17.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
16.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
16.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
16.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
16.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
16.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
16.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
16.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
16.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
15.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
15.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
15.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
15.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
15.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
15.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
15.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
15.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
15.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
14.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
14.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
14.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
14.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
14.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
14.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
14.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
14.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
14.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
14.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
14.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
14.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
13.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
13.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
13.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
13.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
12.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
12.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
12.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
12.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
12.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
12.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
12.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
12.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
12.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
12.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
12.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
12.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
12.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
11.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
11.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
11.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
11.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
11.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
11.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
11.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
11.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
11.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
11.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
11.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
11.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
11.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
11.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
11.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
11.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
11.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
11.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
11.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
11.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
11.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
11.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
10.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
10.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
10.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
10.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
10.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
10.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
10.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
10.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
10.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
10.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
10.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
10.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
10.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
10.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
9.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
9.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
9.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
9.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
9.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
9.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
9.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
8.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
8.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
8.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
8.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
8.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
7.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
7.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
7.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
7.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
7.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
7.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
7.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
7.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
7.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
6.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
6.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
6.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
6.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
6.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
6.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
6.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
6.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
6.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
6.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
6.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
6.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
6.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
6.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
5.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
5.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
5.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
5.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
5.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
5.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
5.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
5.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
4.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
4.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
4.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
4.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
4.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
3.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
3.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
3.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
3.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
3.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
3.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
3.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
3.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
3.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
3.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
3.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
2.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
2.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
2.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
2.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
2.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
2.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
2.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
1.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
1.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NRBP2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
82.3
Number of samples
231
Samples
Sample
Description
TPM
DO45169
0 years, male, NA, stage:3, alive, 1350 days
369.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
351.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
328.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
326.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
306.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
276.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
254.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
252.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
239.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
234.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
231.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
225.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
220.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
212.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
204.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
200.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
196.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
181.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
180.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
179.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
168.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
162.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
159.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
157.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
155.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
155.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
154.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
152.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
151.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
150.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
149.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
148.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
144.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
141.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
138.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
138.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
133.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
131.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
131.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
131.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
128.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
128.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
127.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
126.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
125.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
123.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
123.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
123.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
121.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
120.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
119.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
118.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
117.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
114.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
114.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
113.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
111.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
111.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
109.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
108.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
108.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
102.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
102.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
101.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
100.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
100.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
99.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
99.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
99.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
99.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
98.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
97.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
94.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
93.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
92.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
92.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
92.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
91.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
91.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
90.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
89.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
89.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
89.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
87.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
87.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
86.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
83.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
77.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
77.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
76.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
75.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
75.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
73.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
73.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
72.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
71.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
70.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
69.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
69.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
69.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
69.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
68.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
68.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
67.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
64.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
64.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
64.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
63.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
63.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
63.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
62.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
61.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
60.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
60.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
60.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
59.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
59.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
59.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
58.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
58.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
58.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
58.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
57.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
57.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
55.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
55.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
55.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
55.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
55.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
54.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
54.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
53.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
53.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
53.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
53.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
53.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
51.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
51.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
50.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
50.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
50.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
49.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
48.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
48.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
48.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
47.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
46.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
46.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
46.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
46.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
45.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
45.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
44.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
44.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
44.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
43.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
42.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
41.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
41.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
41.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
41.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
40.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
39.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
39.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
39.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
39.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
37.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
37.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
37.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
37.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
37.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
37.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
36.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
36.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
36.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
36.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
34.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
33.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
33.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
33.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
33.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
33.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
32.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
32.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
31.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
31.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
31.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
31.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
30.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
30.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
30.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
30.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
29.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
28.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
27.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
27.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
27.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
27.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
26.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
26.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
26.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
25.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
25.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
25.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
25.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
25.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
24.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
24.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
24.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
24.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
24.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
23.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
21.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
21.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
20.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
20.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
19.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
19.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
15.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
15.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
14.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
14.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
14.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
13.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
13.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
12.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
11.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
9.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
9.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
8.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
6.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1027
Tumor
1.8
267
Tumor
1.4
557
Tumor
1.3
147
Tumor
1.2
257
Tumor
1.2
341
Tumor
1.1
127
Tumor
1.0
925
Tumor
1.0
937
Tumor
1.0
112
Tumor
1.0
537
Tumor
1.0
411
Tumor
1.0
745
Tumor
1.0
161
Tumor
1.0
685
Tumor
0.9
435
Tumor
0.9
1013
Tumor
0.9
465
Tumor
0.9
851
Tumor
0.8
663
Tumor
0.8
487
Tumor
0.8
231
Tumor
0.8
313
Tumor
0.7
873
Tumor
0.7
533
Tumor
0.7
113
Tumor
0.6
443
Tumor
0.6
641
Tumor
0.5
223
Tumor
0.5
567
Tumor
0.5
171
Tumor
0.5
883
Tumor
0.4
635
Tumor
0.4
421
Tumor
0.4
1041
Tumor
0.4
277
Tumor
0.4
185
Tumor
0.4
953
Tumor
0.4
617
Tumor
0.4
483
Tumor
0.4
573
Tumor
0.3
124
Normal
0.3
218
Normal
0.3
353
Tumor
0.3
461
Tumor
0.3
423
Tumor
0.3
427
Tumor
0.2
911
Tumor
0.2
921
Tumor
0.2
187
Tumor
0.2
737
Tumor
0.2
191
Tumor
0.2
258
Normal
0.2
357
Tumor
0.2
571
Tumor
0.2
431
Tumor
0.2
451
Tumor
0.2
915
Tumor
0.2
145
Tumor
0.2
232
Normal
0.2
128
Normal
0.2
298
Normal
0.2
563
Tumor
0.2
365
Tumor
0.2
528
Normal
0.2
344
Normal
0.2
262
Normal
0.2
957
Tumor
0.1
642
Normal
0.1
297
Tumor
0.1
865
Tumor
0.1
111
Normal
0.1
471
Tumor
0.1
195
Tumor
0.1
515
Tumor
0.1
912
Normal
0.1
878
Normal
0.1
823
Tumor
0.1
358
Normal
0.1
723
Tumor
0.1
882
Normal
0.1
513
Tumor
0.1
138
Normal
0.1
714
Normal
0.1
361
Tumor
0.1
214
Normal
0.1
746
Normal
0.1
394
Normal
0.1
467
Tumor
0.1
332
Normal
0.1
392
Normal
0.1
126
Normal
0.0
286
Normal
0.0
148
Normal
0.0
114
Normal
0.0
523
Tumor
0.0
456
Normal
0.0
222
Normal
0.0
228
Normal
0.0
636
Normal
0.0
867
Tumor
0.0
618
Normal
0.0
172
Normal
0.0
463
Tumor
0.0
384
Normal
0.0
137
Tumor
0.0
327
Tumor
0.0
574
Normal
0.0
686
Normal
0.0
1026
Normal
0.0
914
Normal
0.0
162
Normal
0.0
615
Tumor
0.0
125
Tumor
0.0
564
Normal
0.0
924
Normal
0.0
968
Normal
0.0
123
Tumor
0.0
922
Normal
0.0
196
Normal
0.0
268
Normal
0.0
728
Normal
0.0
217
Tumor
0.0
213
Tumor
0.0
864
Normal
0.0
963
Tumor
0.0
813
Tumor
0.0
314
Normal
0.0
698
Normal
0.0
272
Normal
0.0
572
Normal
0.0
755
Tumor
0.0
224
Normal
0.0
744
Normal
0.0
852
Normal
0.0
354
Normal
-0.1
538
Normal
-0.1
366
Normal
-0.1
558
Normal
-0.1
874
Normal
-0.1
135
Tumor
-0.1
436
Normal
-0.1
468
Normal
-0.1
958
Normal
-0.1
186
Normal
-0.1
568
Normal
-0.1
1014
Normal
-0.1
142
Normal
-0.1
938
Normal
-0.1
697
Tumor
-0.1
376
Normal
-0.1
415
Tumor
-0.1
136
Normal
-0.1
918
Normal
-0.1
966
Normal
-0.1
952
Normal
-0.1
414
Normal
-0.1
464
Normal
-0.1
616
Normal
-0.1
448
Normal
-0.1
284
Normal
-0.1
342
Normal
-0.1
786
Normal
-0.1
666
Normal
-0.1
413
Tumor
-0.1
433
Tumor
-0.1
672
Normal
-0.1
426
Normal
-0.1
422
Normal
-0.1
192
Normal
-0.1
858
Normal
-0.1
1046
Normal
-0.1
756
Normal
-0.1
1043
Tumor
-0.1
362
Normal
-0.1
664
Normal
-0.1
628
Normal
-0.1
954
Normal
-0.1
923
Tumor
-0.2
696
Normal
-0.2
722
Normal
-0.2
546
Normal
-0.2
778
Normal
-0.2
146
Normal
-0.2
662
Normal
-0.2
481
Tumor
-0.2
738
Normal
-0.2
462
Normal
-0.2
862
Normal
-0.2
742
Normal
-0.2
884
Normal
-0.2
466
Normal
-0.2
482
Normal
-0.2
916
Normal
-0.2
132
Normal
-0.2
716
Normal
-0.2
1022
Normal
-0.2
444
Normal
-0.2
524
Normal
-0.2
516
Normal
-0.2
777
Tumor
-0.2
866
Normal
-0.2
648
Normal
-0.2
452
Normal
-0.2
498
Normal
-0.2
824
Normal
-0.2
926
Normal
-0.2
352
Normal
-0.2
434
Normal
-0.2
982
Normal
-0.2
1044
Normal
-0.2
1042
Normal
-0.2
868
Normal
-0.2
964
Normal
-0.2
956
Normal
-0.2
375
Tumor
-0.2
312
Normal
-0.2
428
Normal
-0.2
278
Normal
-0.2
818
Normal
-0.2
984
Normal
-0.2
976
Normal
-0.2
396
Normal
-0.2
493
Tumor
-0.2
446
Normal
-0.2
955
Tumor
-0.2
913
Tumor
-0.2
356
Normal
-0.2
386
Normal
-0.2
526
Normal
-0.2
368
Normal
-0.2
432
Normal
-0.2
188
Normal
-0.2
488
Normal
-0.2
416
Normal
-0.2
518
Normal
-0.3
536
Normal
-0.3
981
Tumor
-0.3
271
Tumor
-0.3
1045
Tumor
-0.3
534
Normal
-0.3
141
Tumor
-0.3
212
Normal
-0.3
1032
Normal
-0.3
388
Normal
-0.3
227
Tumor
-0.3
554
Normal
-0.3
424
Normal
-0.3
412
Normal
-0.3
261
Tumor
-0.3
395
Tumor
-0.3
816
Normal
-0.3
514
Normal
-0.3
881
Tumor
-0.3
477
Tumor
-0.3
721
Tumor
-0.3
861
Tumor
-0.3
525
Tumor
-0.3
1028
Normal
-0.3
857
Tumor
-0.3
478
Normal
-0.3
517
Tumor
-0.3
494
Normal
-0.4
944
Normal
-0.4
472
Normal
-0.4
383
Tumor
-0.4
627
Tumor
-0.4
785
Tumor
-0.4
455
Tumor
-0.4
474
Normal
-0.4
364
Normal
-0.4
1016
Normal
-0.4
355
Tumor
-0.4
393
Tumor
-0.4
647
Tumor
-0.4
1025
Tumor
-0.4
715
Tumor
-0.4
951
Tumor
-0.4
1021
Tumor
-0.4
863
Tumor
-0.4
665
Tumor
-0.5
978
Normal
-0.5
328
Normal
-0.5
492
Normal
-0.5
484
Normal
-0.5
695
Tumor
-0.5
814
Normal
-0.6
445
Tumor
-0.6
363
Tumor
-0.6
221
Tumor
-0.6
473
Tumor
-0.6
553
Tumor
-0.6
367
Tumor
-0.6
425
Tumor
-0.6
331
Tumor
-0.6
535
Tumor
-0.7
967
Tumor
-0.7
727
Tumor
-0.7
387
Tumor
-0.7
527
Tumor
-0.7
391
Tumor
-0.7
1015
Tumor
-0.7
545
Tumor
-0.7
497
Tumor
-0.7
975
Tumor
-0.8
917
Tumor
-0.8
311
Tumor
-0.9
877
Tumor
-0.9
983
Tumor
-0.9
283
Tumor
-0.9
977
Tumor
-0.9
343
Tumor
-0.9
815
Tumor
-0.9
713
Tumor
-1.0
943
Tumor
-1.0
965
Tumor
-1.0
817
Tumor
-1.0
447
Tumor
-1.0
491
Tumor
-1.0
741
Tumor
-1.0
671
Tumor
-1.0
1031
Tumor
-1.3
385
Tumor
-1.3
285
Tumor
-1.4
351
Tumor
-1.5
661
Tumor
-1.5
211
Tumor
-1.6
724
Normal
-1.7
131
Tumor
-1.9
743
Tumor
-1.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
