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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HSF1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
82.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
78.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
71.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
68.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
66.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
64.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
58.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
57.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
52.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
51.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
47.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
46.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
45.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
45.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
44.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
43.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
43.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
43.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
43.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
42.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
42.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
42.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
42.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
41.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
41.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
40.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
39.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
39.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
39.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
38.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
38.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
38.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
37.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
37.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
37.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
36.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
36.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
35.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
35.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
34.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
34.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
34.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
34.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
34.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
33.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
33.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
33.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
33.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
33.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
33.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
33.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
33.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
32.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
32.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
32.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
32.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
32.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
32.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
32.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
32.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
31.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
31.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
31.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
31.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
31.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
31.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
31.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
30.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
30.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
30.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
30.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
30.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
29.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
29.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
29.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
29.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
29.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
29.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
28.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
28.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
28.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
28.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
27.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
27.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
27.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
27.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
27.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
27.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
27.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
27.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
27.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
26.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
26.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
26.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
26.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
26.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
26.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
26.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
26.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
25.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
25.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
25.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
25.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
25.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
25.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
25.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
24.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
24.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
24.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
24.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
24.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
24.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
24.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
23.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
23.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
23.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
23.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
23.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
23.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
23.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
22.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
22.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
22.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
22.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
22.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
22.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
22.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
22.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
22.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
22.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
21.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
21.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
21.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
21.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
21.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
21.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
20.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
20.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
20.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
20.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
20.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
20.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
20.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
20.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
20.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
20.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
20.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
20.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
20.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
20.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
19.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
19.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
19.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
19.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
19.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
19.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
19.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
19.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
19.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
19.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
19.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
18.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
18.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
18.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
18.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
18.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
18.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
18.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
18.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
18.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
18.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
18.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
17.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
17.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
17.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
17.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
17.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
17.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
17.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
17.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
17.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
17.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
17.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
17.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
17.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
17.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
17.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
16.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
16.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
16.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
16.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
16.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
16.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
16.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
16.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
16.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
16.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
16.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
16.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
16.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
16.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
16.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
16.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
16.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
16.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
15.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
15.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
15.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
15.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
15.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
15.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
15.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
15.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
15.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
15.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
15.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
15.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
15.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
15.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
15.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
15.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
15.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
14.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
14.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
14.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
14.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
14.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
14.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
14.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
14.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
14.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
14.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
14.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
14.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
14.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
14.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
14.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
14.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
14.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
14.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
14.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
14.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
14.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
14.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
14.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
14.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
13.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
13.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
13.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
13.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
13.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
13.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
13.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
13.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
13.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
13.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
13.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
13.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
13.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
13.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
13.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
12.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
12.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
12.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
12.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
12.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
12.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
12.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
12.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
12.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
12.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
12.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
12.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
12.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
12.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
12.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
12.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
12.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
12.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
12.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
12.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
12.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
12.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
12.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
12.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
12.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
11.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
11.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
11.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
11.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
11.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
11.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
11.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
11.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
11.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
11.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
11.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
11.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
10.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
10.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
10.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
10.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
10.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
10.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
10.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
10.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
10.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
10.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
10.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
10.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
10.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
10.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
9.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
9.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
9.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
9.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
9.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
9.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
9.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
9.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
9.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
9.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
9.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
9.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
8.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
8.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
8.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
8.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
8.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
8.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
8.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
8.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
8.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
8.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
7.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
7.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
6.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
6.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HSF1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
38.1
Number of samples
231
Samples
Sample
Description
TPM
DO45269
0 years, male, NA, stage:3, alive, 750 days
126.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
125.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
119.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
119.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
116.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
102.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
98.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
95.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
91.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
88.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
87.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
87.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
84.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
82.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
80.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
78.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
77.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
72.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
68.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
66.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
66.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
65.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
64.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
64.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
64.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
63.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
62.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
62.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
61.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
61.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
60.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
60.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
59.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
59.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
58.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
58.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
58.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
56.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
54.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
54.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
54.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
53.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
52.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
52.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
51.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
50.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
49.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
49.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
48.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
47.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
47.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
47.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
47.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
47.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
46.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
46.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
46.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
46.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
45.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
45.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
45.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
45.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
44.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
44.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
44.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
44.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
44.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
43.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
43.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
43.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
43.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
43.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
42.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
42.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
42.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
41.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
41.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
41.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
40.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
40.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
40.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
39.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
39.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
39.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
39.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
38.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
38.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
38.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
38.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
38.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
38.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
38.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
37.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
37.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
37.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
36.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
36.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
36.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
36.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
35.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
35.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
35.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
35.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
35.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
35.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
35.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
34.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
33.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
32.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
32.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
32.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
32.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
32.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
31.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
31.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
31.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
31.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
31.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
31.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
31.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
31.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
31.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
30.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
30.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
30.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
30.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
30.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
30.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
29.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
29.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
29.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
29.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
29.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
29.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
28.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
28.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
28.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
28.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
28.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
28.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
28.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
28.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
27.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
27.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
27.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
27.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
27.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
27.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
27.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
26.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
26.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
26.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
26.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
26.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
26.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
26.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
25.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
25.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
25.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
25.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
25.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
25.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
25.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
25.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
25.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
25.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
25.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
24.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
24.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
24.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
24.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
24.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
24.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
24.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
24.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
24.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
23.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
23.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
23.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
23.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
23.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
23.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
21.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
21.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
20.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
20.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
20.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
20.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
20.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
19.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
19.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
19.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
19.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
19.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
19.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
19.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
18.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
18.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
18.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
17.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
17.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
16.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
16.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
16.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
16.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
16.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
16.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
15.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
15.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
15.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
15.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
15.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
15.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
15.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
15.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
15.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
14.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
14.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
14.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
14.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
14.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
14.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
14.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
13.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
13.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
13.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
12.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
12.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
11.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
10.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
9.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
231
Tumor
1.1
267
Tumor
1.1
951
Tumor
1.0
965
Tumor
1.0
925
Tumor
0.9
663
Tumor
0.9
537
Tumor
0.9
123
Tumor
0.9
865
Tumor
0.9
641
Tumor
0.8
685
Tumor
0.8
473
Tumor
0.8
161
Tumor
0.8
331
Tumor
0.8
367
Tumor
0.7
443
Tumor
0.7
313
Tumor
0.7
715
Tumor
0.7
1015
Tumor
0.7
557
Tumor
0.7
957
Tumor
0.7
743
Tumor
0.6
341
Tumor
0.6
427
Tumor
0.6
671
Tumor
0.6
471
Tumor
0.6
483
Tumor
0.5
395
Tumor
0.5
533
Tumor
0.5
351
Tumor
0.5
967
Tumor
0.5
171
Tumor
0.5
185
Tumor
0.5
661
Tumor
0.5
567
Tumor
0.5
963
Tumor
0.5
1041
Tumor
0.5
211
Tumor
0.5
937
Tumor
0.5
445
Tumor
0.4
435
Tumor
0.4
697
Tumor
0.4
147
Tumor
0.4
425
Tumor
0.4
385
Tumor
0.4
1013
Tumor
0.4
497
Tumor
0.4
387
Tumor
0.4
413
Tumor
0.4
535
Tumor
0.4
635
Tumor
0.4
135
Tumor
0.4
227
Tumor
0.3
573
Tumor
0.3
975
Tumor
0.3
817
Tumor
0.3
911
Tumor
0.3
297
Tumor
0.3
187
Tumor
0.3
463
Tumor
0.3
431
Tumor
0.3
271
Tumor
0.3
375
Tumor
0.3
112
Tumor
0.3
877
Tumor
0.3
423
Tumor
0.2
467
Tumor
0.2
493
Tumor
0.2
355
Tumor
0.2
823
Tumor
0.2
277
Tumor
0.2
477
Tumor
0.2
517
Tumor
0.2
491
Tumor
0.2
923
Tumor
0.2
465
Tumor
0.2
983
Tumor
0.2
257
Tumor
0.2
737
Tumor
0.2
881
Tumor
0.2
127
Tumor
0.2
915
Tumor
0.2
232
Normal
0.1
953
Tumor
0.1
861
Tumor
0.1
433
Tumor
0.1
353
Tumor
0.1
223
Tumor
0.1
131
Tumor
0.1
867
Tumor
0.1
873
Tumor
0.1
1031
Tumor
0.1
571
Tumor
0.1
283
Tumor
0.1
221
Tumor
0.1
513
Tumor
0.1
213
Tumor
0.1
977
Tumor
0.1
665
Tumor
0.1
141
Tumor
0.1
421
Tumor
0.1
258
Normal
0.0
813
Tumor
0.0
536
Normal
0.0
361
Tumor
0.0
921
Tumor
0.0
268
Normal
0.0
461
Tumor
0.0
365
Tumor
0.0
815
Tumor
0.0
487
Tumor
0.0
851
Tumor
0.0
391
Tumor
0.0
563
Tumor
0.0
411
Tumor
0.0
262
Normal
0.0
814
Normal
0.0
444
Normal
-0.1
745
Tumor
-0.1
272
Normal
-0.1
1021
Tumor
-0.1
217
Tumor
-0.1
777
Tumor
-0.1
883
Tumor
-0.1
525
Tumor
-0.1
523
Tumor
-0.1
172
Normal
-0.1
617
Tumor
-0.1
1025
Tumor
-0.1
695
Tumor
-0.1
191
Tumor
-0.1
261
Tumor
-0.1
785
Tumor
-0.1
721
Tumor
-0.1
383
Tumor
-0.1
434
Normal
-0.1
192
Normal
-0.1
943
Tumor
-0.1
455
Tumor
-0.1
466
Normal
-0.1
636
Normal
-0.1
615
Tumor
-0.1
447
Tumor
-0.1
913
Tumor
-0.1
113
Tumor
-0.2
863
Tumor
-0.2
627
Tumor
-0.2
857
Tumor
-0.2
312
Normal
-0.2
553
Tumor
-0.2
415
Tumor
-0.2
343
Tumor
-0.2
424
Normal
-0.2
451
Tumor
-0.2
195
Tumor
-0.2
222
Normal
-0.2
944
Normal
-0.2
492
Normal
-0.2
414
Normal
-0.2
478
Normal
-0.2
392
Normal
-0.2
1014
Normal
-0.2
538
Normal
-0.2
357
Tumor
-0.2
1045
Tumor
-0.2
456
Normal
-0.2
145
Tumor
-0.2
917
Tumor
-0.2
396
Normal
-0.2
956
Normal
-0.2
352
Normal
-0.2
984
Normal
-0.2
468
Normal
-0.2
958
Normal
-0.2
363
Tumor
-0.2
954
Normal
-0.2
188
Normal
-0.2
428
Normal
-0.3
864
Normal
-0.3
393
Tumor
-0.3
964
Normal
-0.3
448
Normal
-0.3
314
Normal
-0.3
311
Tumor
-0.3
746
Normal
-0.3
162
Normal
-0.3
744
Normal
-0.3
755
Tumor
-0.3
982
Normal
-0.3
554
Normal
-0.3
981
Tumor
-0.3
866
Normal
-0.3
955
Tumor
-0.3
446
Normal
-0.3
332
Normal
-0.3
148
Normal
-0.3
484
Normal
-0.3
966
Normal
-0.3
698
Normal
-0.3
186
Normal
-0.3
978
Normal
-0.3
388
Normal
-0.3
481
Tumor
-0.3
723
Tumor
-0.3
938
Normal
-0.3
534
Normal
-0.3
564
Normal
-0.3
618
Normal
-0.3
366
Normal
-0.3
713
Tumor
-0.3
196
Normal
-0.3
628
Normal
-0.3
142
Normal
-0.3
1044
Normal
-0.3
386
Normal
-0.3
516
Normal
-0.3
714
Normal
-0.3
738
Normal
-0.3
464
Normal
-0.3
146
Normal
-0.3
394
Normal
-0.3
498
Normal
-0.4
545
Tumor
-0.4
642
Normal
-0.4
224
Normal
-0.4
132
Normal
-0.4
472
Normal
-0.4
616
Normal
-0.4
515
Tumor
-0.4
862
Normal
-0.4
218
Normal
-0.4
686
Normal
-0.4
696
Normal
-0.4
924
Normal
-0.4
298
Normal
-0.4
368
Normal
-0.4
952
Normal
-0.4
354
Normal
-0.4
344
Normal
-0.4
422
Normal
-0.4
482
Normal
-0.4
558
Normal
-0.4
1046
Normal
-0.4
874
Normal
-0.4
1016
Normal
-0.4
926
Normal
-0.4
285
Tumor
-0.4
452
Normal
-0.4
572
Normal
-0.4
528
Normal
-0.4
568
Normal
-0.4
214
Normal
-0.4
327
Tumor
-0.4
968
Normal
-0.4
664
Normal
-0.4
136
Normal
-0.4
125
Tumor
-0.4
912
Normal
-0.4
474
Normal
-0.4
1043
Tumor
-0.4
1022
Normal
-0.4
882
Normal
-0.4
574
Normal
-0.4
426
Normal
-0.4
916
Normal
-0.4
514
Normal
-0.4
1028
Normal
-0.4
778
Normal
-0.4
724
Normal
-0.4
716
Normal
-0.5
432
Normal
-0.5
884
Normal
-0.5
878
Normal
-0.5
976
Normal
-0.5
138
Normal
-0.5
462
Normal
-0.5
364
Normal
-0.5
1042
Normal
-0.5
922
Normal
-0.5
384
Normal
-0.5
524
Normal
-0.5
488
Normal
-0.5
741
Tumor
-0.5
727
Tumor
-0.5
137
Tumor
-0.5
858
Normal
-0.5
742
Normal
-0.5
342
Normal
-0.5
1032
Normal
-0.5
546
Normal
-0.5
662
Normal
-0.5
436
Normal
-0.5
868
Normal
-0.5
728
Normal
-0.5
416
Normal
-0.5
526
Normal
-0.5
358
Normal
-0.5
786
Normal
-0.5
722
Normal
-0.5
918
Normal
-0.6
1026
Normal
-0.6
518
Normal
-0.6
328
Normal
-0.6
278
Normal
-0.6
647
Tumor
-0.6
818
Normal
-0.6
362
Normal
-0.6
1027
Tumor
-0.6
412
Normal
-0.6
124
Normal
-0.6
228
Normal
-0.6
852
Normal
-0.6
128
Normal
-0.6
212
Normal
-0.6
756
Normal
-0.6
672
Normal
-0.6
816
Normal
-0.6
494
Normal
-0.6
824
Normal
-0.6
914
Normal
-0.7
376
Normal
-0.7
284
Normal
-0.7
114
Normal
-0.7
356
Normal
-0.7
286
Normal
-0.7
126
Normal
-0.7
527
Tumor
-0.7
111
Normal
-0.8
666
Normal
-0.8
648
Normal
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
