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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FAF1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
51.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
41.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
41.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
39.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
39.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
37.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
37.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
36.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
34.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
33.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
32.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
32.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
29.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
29.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
29.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
29.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
29.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
28.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
28.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
28.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
27.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
27.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
27.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
27.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
27.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
27.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
26.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
26.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
26.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
26.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
26.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
26.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
25.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
25.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
25.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
25.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
25.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
25.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
25.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
25.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
25.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
24.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
24.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
24.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
24.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
24.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
24.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
24.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
23.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
23.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
23.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
23.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
23.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
23.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
23.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
23.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
23.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
22.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
22.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
22.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
22.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
22.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
22.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
22.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
22.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
22.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
22.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
22.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
21.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
21.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
21.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
21.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
21.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
21.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
21.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
21.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
21.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
21.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
21.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
21.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
21.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
21.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
20.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
20.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
20.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
20.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
20.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
20.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
20.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
20.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
20.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
20.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
20.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
19.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
19.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
19.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
19.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
19.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
19.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
19.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
19.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
19.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
19.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
19.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
19.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
19.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
19.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
19.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
19.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
19.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
18.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
18.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
18.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
18.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
18.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
18.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
18.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
18.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
18.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
18.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
18.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
18.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
18.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
18.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
18.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
18.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
18.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
17.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
17.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
17.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
17.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
17.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
17.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
17.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
17.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
17.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
17.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
17.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
17.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
17.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
17.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
17.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
16.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
16.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
16.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
16.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
16.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
16.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
16.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
16.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
16.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
16.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
16.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
16.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
15.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
15.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
15.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
15.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
15.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
15.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
15.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
15.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
15.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
15.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
15.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
15.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
15.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
15.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
15.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
15.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
15.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
15.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
15.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
15.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
15.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
15.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
15.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
15.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
15.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
15.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
14.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
14.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
14.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
14.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
14.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
14.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
14.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
14.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
14.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
14.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
14.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
14.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
14.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
14.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
14.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
14.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
14.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
14.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
14.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
14.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
14.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
14.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
13.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
13.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
13.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
13.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
13.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
13.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
13.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
13.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
13.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
13.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
13.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
13.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
13.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
13.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
13.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
13.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
13.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
13.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
13.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
13.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
13.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
13.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
13.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
13.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
13.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
13.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
13.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
13.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
13.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
13.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
13.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
13.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
13.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
12.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
12.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
12.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
12.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
12.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
12.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
12.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
12.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
12.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
12.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
12.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
12.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
12.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
12.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
12.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
12.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
12.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
12.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
12.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
12.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
12.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
12.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
12.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
11.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
11.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
11.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
11.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
11.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
11.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
11.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
11.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
11.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
11.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
11.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
11.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
11.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
11.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
11.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
11.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
11.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
11.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
11.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
11.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
11.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
11.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
11.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
11.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
11.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
11.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
10.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
10.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
10.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
10.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
10.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
10.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
10.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
10.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
10.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
10.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
10.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
10.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
10.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
10.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
10.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
10.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
10.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
10.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
10.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
10.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
9.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
9.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
9.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
9.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
9.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
9.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
9.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
9.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
9.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
9.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
9.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
9.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
9.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
9.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
9.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
9.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
9.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
9.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
9.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
9.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
8.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
8.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
8.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
8.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
8.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
8.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
8.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
8.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
8.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
8.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
8.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
8.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
8.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
7.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
7.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
7.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
7.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
7.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
7.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
7.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
7.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FAF1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.5
Number of samples
231
Samples
Sample
Description
TPM
DO23537
0 years, male, NA, stage:2, dead, 900 days
41.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
35.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
35.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
32.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
31.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
31.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
29.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
29.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
29.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
29.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
29.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
28.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
28.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
28.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
27.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
26.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
25.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
25.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
25.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
24.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
24.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
23.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
23.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
23.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
23.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
22.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
22.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
22.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
21.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
21.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
21.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
21.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
20.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
20.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
20.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
20.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
20.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
20.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
20.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
19.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
19.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
19.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
19.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
19.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
19.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
19.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
19.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
19.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
19.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
18.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
18.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
18.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
18.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
18.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
18.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
18.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
18.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
18.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
18.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
18.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
18.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
18.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
18.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
18.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
17.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
17.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
17.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
17.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
17.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
17.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
17.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
17.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
17.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
17.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
17.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
17.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
17.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
16.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
16.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
16.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
16.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
16.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
16.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
16.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
16.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
16.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
16.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
16.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
16.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
16.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
16.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
16.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
16.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
16.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
16.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
15.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
15.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
15.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
15.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
15.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
15.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
15.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
15.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
15.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
15.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
15.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
15.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
15.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
14.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
14.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
14.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
14.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
14.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
14.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
14.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
14.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
14.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
14.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
14.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
13.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
13.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
13.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
13.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
13.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
13.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
13.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
13.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
13.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
13.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
13.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
13.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
13.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
13.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
13.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
13.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
13.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
13.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
13.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
13.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
13.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
13.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
13.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
13.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
13.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
13.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
12.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
12.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
12.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
12.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
12.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
12.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
12.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
12.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
12.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
12.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
12.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
12.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
12.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
12.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
12.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
12.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
12.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
12.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
11.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
11.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
11.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
11.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
11.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
11.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
11.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
11.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
11.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
11.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
11.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
10.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
10.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
10.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
10.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
10.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
10.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
10.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
10.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
10.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
10.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
10.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
10.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
10.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
10.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
10.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
10.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
10.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
10.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
9.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
9.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
9.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
9.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
9.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
9.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
9.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
9.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
9.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
9.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
9.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
9.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
9.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
9.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
9.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
8.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
8.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
8.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
8.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
8.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
8.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
8.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
8.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
8.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
8.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
8.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
8.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
7.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
7.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
7.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
7.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
7.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
957
Tumor
1.1
523
Tumor
0.8
647
Tumor
0.8
1027
Tumor
0.7
425
Tumor
0.7
737
Tumor
0.7
211
Tumor
0.7
663
Tumor
0.7
393
Tumor
0.7
431
Tumor
0.7
537
Tumor
0.7
741
Tumor
0.7
131
Tumor
0.7
1013
Tumor
0.7
571
Tumor
0.7
777
Tumor
0.6
313
Tumor
0.6
953
Tumor
0.6
1021
Tumor
0.6
411
Tumor
0.6
635
Tumor
0.6
911
Tumor
0.5
357
Tumor
0.5
943
Tumor
0.5
567
Tumor
0.5
481
Tumor
0.5
865
Tumor
0.5
685
Tumor
0.5
112
Tumor
0.5
487
Tumor
0.5
387
Tumor
0.5
125
Tumor
0.5
231
Tumor
0.5
661
Tumor
0.5
355
Tumor
0.4
977
Tumor
0.4
391
Tumor
0.4
513
Tumor
0.4
863
Tumor
0.4
515
Tumor
0.4
277
Tumor
0.4
497
Tumor
0.4
1015
Tumor
0.4
573
Tumor
0.4
915
Tumor
0.3
473
Tumor
0.3
724
Normal
0.3
695
Tumor
0.3
415
Tumor
0.3
161
Tumor
0.3
965
Tumor
0.3
141
Tumor
0.3
923
Tumor
0.3
813
Tumor
0.3
527
Tumor
0.3
383
Tumor
0.3
755
Tumor
0.3
861
Tumor
0.3
925
Tumor
0.2
1025
Tumor
0.2
1045
Tumor
0.2
451
Tumor
0.2
814
Normal
0.2
257
Tumor
0.2
1041
Tumor
0.2
617
Tumor
0.2
867
Tumor
0.2
311
Tumor
0.2
463
Tumor
0.2
445
Tumor
0.2
375
Tumor
0.2
145
Tumor
0.2
937
Tumor
0.2
873
Tumor
0.2
283
Tumor
0.2
913
Tumor
0.2
491
Tumor
0.2
955
Tumor
0.2
465
Tumor
0.2
745
Tumor
0.2
477
Tumor
0.1
185
Tumor
0.1
353
Tumor
0.1
342
Normal
0.1
267
Tumor
0.1
536
Normal
0.1
423
Tumor
0.1
981
Tumor
0.1
954
Normal
0.1
944
Normal
0.1
443
Tumor
0.1
351
Tumor
0.1
818
Normal
0.1
627
Tumor
0.1
137
Tumor
0.1
367
Tumor
0.1
524
Normal
0.1
545
Tumor
0.1
361
Tumor
0.1
883
Tumor
0.1
427
Tumor
0.1
213
Tumor
0.1
358
Normal
0.1
384
Normal
0.1
665
Tumor
0.1
261
Tumor
0.1
127
Tumor
0.1
964
Normal
0.1
191
Tumor
0.1
912
Normal
0.1
365
Tumor
0.1
723
Tumor
0.1
484
Normal
0.1
171
Tumor
0.1
455
Tumor
0.1
123
Tumor
0.1
697
Tumor
0.1
721
Tumor
0.0
976
Normal
0.0
186
Normal
0.0
743
Tumor
0.0
341
Tumor
0.0
535
Tumor
0.0
482
Normal
0.0
478
Normal
0.0
467
Tumor
0.0
958
Normal
0.0
526
Normal
0.0
966
Normal
0.0
528
Normal
0.0
517
Tumor
0.0
884
Normal
0.0
352
Normal
0.0
744
Normal
0.0
1026
Normal
0.0
516
Normal
0.0
461
Tumor
0.0
488
Normal
0.0
1014
Normal
0.0
354
Normal
0.0
344
Normal
0.0
135
Tumor
0.0
824
Normal
0.0
815
Tumor
0.0
554
Normal
0.0
498
Normal
0.0
472
Normal
0.0
534
Normal
0.0
493
Tumor
0.0
376
Normal
0.0
563
Tumor
0.0
188
Normal
0.0
696
Normal
0.0
392
Normal
0.0
1046
Normal
0.0
1032
Normal
0.0
568
Normal
0.0
1042
Normal
0.0
672
Normal
0.0
738
Normal
0.0
187
Tumor
0.0
924
Normal
0.0
462
Normal
0.0
435
Tumor
0.0
546
Normal
0.0
456
Normal
0.0
364
Normal
0.0
286
Normal
0.0
952
Normal
0.0
356
Normal
0.0
858
Normal
0.0
983
Tumor
-0.1
558
Normal
-0.1
483
Tumor
-0.1
1022
Normal
-0.1
366
Normal
-0.1
572
Normal
-0.1
968
Normal
-0.1
878
Normal
-0.1
857
Tumor
-0.1
426
Normal
-0.1
172
Normal
-0.1
938
Normal
-0.1
148
Normal
-0.1
951
Tumor
-0.1
136
Normal
-0.1
978
Normal
-0.1
494
Normal
-0.1
146
Normal
-0.1
162
Normal
-0.1
728
Normal
-0.1
446
Normal
-0.1
416
Normal
-0.1
444
Normal
-0.1
228
Normal
-0.1
268
Normal
-0.1
1044
Normal
-0.1
412
Normal
-0.1
666
Normal
-0.1
474
Normal
-0.1
421
Tumor
-0.1
331
Tumor
-0.1
722
Normal
-0.1
1016
Normal
-0.1
386
Normal
-0.1
343
Tumor
-0.1
851
Tumor
-0.1
686
Normal
-0.1
538
Normal
-0.1
422
Normal
-0.1
786
Normal
-0.1
447
Tumor
-0.1
328
Normal
-0.1
196
Normal
-0.1
492
Normal
-0.1
778
Normal
-0.1
428
Normal
-0.1
984
Normal
-0.1
142
Normal
-0.1
956
Normal
-0.1
926
Normal
-0.1
448
Normal
-0.1
714
Normal
-0.1
922
Normal
-0.1
698
Normal
-0.1
664
Normal
-0.1
128
Normal
-0.1
514
Normal
-0.1
232
Normal
-0.1
271
Tumor
-0.1
1028
Normal
-0.1
132
Normal
-0.1
368
Normal
-0.1
424
Normal
-0.1
466
Normal
-0.1
434
Normal
-0.1
284
Normal
-0.1
823
Tumor
-0.1
982
Normal
-0.1
394
Normal
-0.1
742
Normal
-0.1
918
Normal
-0.1
564
Normal
-0.1
224
Normal
-0.1
525
Tumor
-0.1
746
Normal
-0.1
212
Normal
-0.1
138
Normal
-0.1
662
Normal
-0.1
963
Tumor
-0.1
518
Normal
-0.1
222
Normal
-0.1
396
Normal
-0.1
816
Normal
-0.1
862
Normal
-0.1
332
Normal
-0.1
852
Normal
-0.1
227
Tumor
-0.1
616
Normal
-0.1
882
Normal
-0.1
114
Normal
-0.1
452
Normal
-0.1
574
Normal
-0.1
362
Normal
-0.1
557
Tumor
-0.1
436
Normal
-0.2
195
Tumor
-0.2
414
Normal
-0.2
756
Normal
-0.2
147
Tumor
-0.2
468
Normal
-0.2
433
Tumor
-0.2
881
Tumor
-0.2
921
Tumor
-0.2
648
Normal
-0.2
192
Normal
-0.2
124
Normal
-0.2
272
Normal
-0.2
388
Normal
-0.2
868
Normal
-0.2
113
Tumor
-0.2
432
Normal
-0.2
716
Normal
-0.2
111
Normal
-0.2
223
Tumor
-0.2
636
Normal
-0.2
297
Tumor
-0.2
298
Normal
-0.2
218
Normal
-0.2
327
Tumor
-0.2
258
Normal
-0.2
866
Normal
-0.2
533
Tumor
-0.2
916
Normal
-0.2
312
Normal
-0.2
642
Normal
-0.2
464
Normal
-0.2
877
Tumor
-0.2
914
Normal
-0.2
314
Normal
-0.2
126
Normal
-0.2
864
Normal
-0.2
1031
Tumor
-0.2
262
Normal
-0.2
395
Tumor
-0.2
278
Normal
-0.2
917
Tumor
-0.2
874
Normal
-0.2
727
Tumor
-0.2
628
Normal
-0.2
217
Tumor
-0.2
214
Normal
-0.2
785
Tumor
-0.2
618
Normal
-0.3
285
Tumor
-0.3
975
Tumor
-0.3
385
Tumor
-0.3
413
Tumor
-0.3
1043
Tumor
-0.3
553
Tumor
-0.3
715
Tumor
-0.3
221
Tumor
-0.4
967
Tumor
-0.4
817
Tumor
-0.4
713
Tumor
-0.4
363
Tumor
-0.5
471
Tumor
-0.5
671
Tumor
-0.5
641
Tumor
-0.6
615
Tumor
-1.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.