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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
INTS5 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
20.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
19.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
16.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
16.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
15.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
15.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
15.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
15.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
14.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
14.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
14.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
14.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
14.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
14.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
14.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
14.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
13.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
13.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
13.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
13.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
13.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
13.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
13.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
13.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
13.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
13.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
12.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
12.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
12.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
12.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
12.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
12.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
12.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
12.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
12.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
12.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
12.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
12.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
12.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
12.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
12.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
12.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
11.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
11.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
11.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
11.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
11.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
11.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
11.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
11.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
11.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
11.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
11.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
11.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
11.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
11.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
11.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
11.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
11.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
10.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
10.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
10.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
10.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
10.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
10.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
10.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
10.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
10.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
10.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
10.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
10.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
10.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
10.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
10.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
10.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
10.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
10.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
10.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
10.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
10.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
10.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
10.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
10.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
10.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
10.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
10.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
10.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
10.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
10.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
10.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
10.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
10.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
9.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
9.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
9.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
9.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
9.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
9.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
9.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
9.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
9.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
9.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
9.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
9.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
9.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
9.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
9.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
9.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
9.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
9.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
9.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
9.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
9.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
9.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
9.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
9.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
9.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
9.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
9.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
9.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
9.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
9.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
9.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
8.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
8.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
8.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
8.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
8.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
8.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
8.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
8.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
8.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
8.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
8.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
8.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
8.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
8.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
8.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
8.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
8.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
8.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
8.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
8.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
8.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
8.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
8.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
8.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
8.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
8.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
8.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
8.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
8.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
8.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
8.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
7.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
7.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
7.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
7.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
7.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
7.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
7.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
7.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
7.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
7.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
7.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
7.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
7.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
7.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
7.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
7.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
7.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
7.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
7.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
7.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
7.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
7.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
7.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
7.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
7.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
7.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
7.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
7.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
7.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
7.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
7.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
7.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
7.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
7.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
7.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
7.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
7.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
7.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
6.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
6.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
6.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
6.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
6.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
6.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
6.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
6.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
6.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
6.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
6.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
6.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
6.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
6.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
6.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
6.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
6.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
6.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
6.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
6.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
6.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
6.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
6.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
6.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
6.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
6.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
5.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
5.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
5.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
5.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
5.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
5.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
5.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
5.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
5.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
5.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
5.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
5.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
5.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
5.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
5.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
5.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
5.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
4.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
4.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
4.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
4.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
4.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
4.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
4.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
3.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
2.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
INTS5 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.7
Number of samples
231
Samples
Sample
Description
TPM
DO50839
0 years, female, NA, stage:3, alive, 330 days
11.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
10.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
9.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
8.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
8.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
8.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
8.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
8.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
8.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
7.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
7.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
7.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
7.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
7.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
7.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
7.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
7.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
7.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
7.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
7.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
7.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
7.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
7.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
7.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
6.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
6.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
6.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
6.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
6.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
6.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
6.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
6.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
6.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
6.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
6.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
6.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
6.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
6.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
6.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
6.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
6.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
6.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
6.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
6.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
6.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
6.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
6.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
6.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
5.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
5.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
5.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
5.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
5.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
5.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
5.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
5.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
5.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
5.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
5.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
5.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
5.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
5.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
5.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
5.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
5.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
5.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
5.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
5.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
5.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
5.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
5.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
5.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
5.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
5.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
5.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
5.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
5.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
5.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
5.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
5.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
5.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
5.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
5.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
5.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
5.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
5.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
5.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
5.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
4.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
4.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
4.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
4.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
4.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
4.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
4.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
4.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
4.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
4.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
4.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
4.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
4.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
4.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
4.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
4.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
4.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
4.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
4.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
4.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
4.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
4.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
4.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
4.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
4.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
4.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
4.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
4.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
4.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
4.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
4.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
4.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
4.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
4.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
4.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
4.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
4.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
4.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
4.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
4.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
4.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
4.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
4.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
4.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
4.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
4.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
4.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
4.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
4.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
4.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
4.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
4.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
4.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
4.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
4.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
4.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
4.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
4.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
4.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
4.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
4.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
4.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
4.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
4.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
4.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
4.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
4.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
3.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
3.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
3.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
3.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
3.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
3.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
3.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
3.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
3.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
3.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
3.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
3.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
3.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
3.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
3.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
3.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
3.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
3.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
3.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
3.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
3.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
3.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
3.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
3.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
3.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
3.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
3.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
3.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
3.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
3.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
3.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
3.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
2.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
2.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
2.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
2.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
2.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
2.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
2.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
2.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
2.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
2.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
2.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
2.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
2.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
2.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
2.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
2.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
2.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
2.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
2.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
2.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
2.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
2.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
2.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
2.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
2.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
1.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
1.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
1.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
1.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
743
Tumor
1.0
131
Tumor
0.7
331
Tumor
0.7
467
Tumor
0.6
671
Tumor
0.6
113
Tumor
0.6
665
Tumor
0.6
865
Tumor
0.5
123
Tumor
0.5
463
Tumor
0.5
277
Tumor
0.5
411
Tumor
0.5
191
Tumor
0.4
814
Normal
0.4
663
Tumor
0.4
217
Tumor
0.4
313
Tumor
0.4
815
Tumor
0.4
465
Tumor
0.4
351
Tumor
0.4
685
Tumor
0.4
427
Tumor
0.4
967
Tumor
0.4
385
Tumor
0.4
227
Tumor
0.4
647
Tumor
0.4
444
Normal
0.4
452
Normal
0.4
314
Normal
0.3
271
Tumor
0.3
877
Tumor
0.3
232
Normal
0.3
737
Tumor
0.3
147
Tumor
0.3
456
Normal
0.3
375
Tumor
0.3
195
Tumor
0.3
128
Normal
0.3
431
Tumor
0.3
127
Tumor
0.3
413
Tumor
0.3
332
Normal
0.3
813
Tumor
0.3
211
Tumor
0.3
468
Normal
0.3
951
Tumor
0.3
192
Normal
0.3
126
Normal
0.3
185
Tumor
0.3
564
Normal
0.3
221
Tumor
0.3
161
Tumor
0.3
125
Tumor
0.3
937
Tumor
0.3
573
Tumor
0.3
358
Normal
0.3
342
Normal
0.3
268
Normal
0.3
297
Tumor
0.3
262
Normal
0.3
943
Tumor
0.3
395
Tumor
0.3
461
Tumor
0.2
188
Normal
0.2
135
Tumor
0.2
661
Tumor
0.2
213
Tumor
0.2
636
Normal
0.2
432
Normal
0.2
124
Normal
0.2
517
Tumor
0.2
724
Normal
0.2
272
Normal
0.2
365
Tumor
0.2
383
Tumor
0.2
111
Normal
0.2
344
Normal
0.2
298
Normal
0.2
112
Tumor
0.2
425
Tumor
0.2
196
Normal
0.2
527
Tumor
0.2
434
Normal
0.2
414
Normal
0.2
114
Normal
0.2
267
Tumor
0.2
218
Normal
0.2
223
Tumor
0.2
357
Tumor
0.2
451
Tumor
0.2
627
Tumor
0.2
278
Normal
0.2
515
Tumor
0.2
341
Tumor
0.2
424
Normal
0.2
464
Normal
0.2
443
Tumor
0.2
523
Tumor
0.2
187
Tumor
0.2
563
Tumor
0.2
367
Tumor
0.2
662
Normal
0.2
436
Normal
0.2
873
Tumor
0.2
368
Normal
0.2
666
Normal
0.2
285
Tumor
0.2
1025
Tumor
0.2
391
Tumor
0.2
393
Tumor
0.2
394
Normal
0.1
912
Normal
0.1
145
Tumor
0.1
884
Normal
0.1
214
Normal
0.1
568
Normal
0.1
354
Normal
0.1
392
Normal
0.1
137
Tumor
0.1
361
Tumor
0.1
672
Normal
0.1
352
Normal
0.1
146
Normal
0.1
446
Normal
0.1
1027
Tumor
0.1
138
Normal
0.1
428
Normal
0.1
858
Normal
0.1
362
Normal
0.1
466
Normal
0.1
615
Tumor
0.1
231
Tumor
0.1
965
Tumor
0.1
426
Normal
0.1
343
Tumor
0.1
423
Tumor
0.1
574
Normal
0.1
881
Tumor
0.1
376
Normal
0.1
388
Normal
0.1
222
Normal
0.1
917
Tumor
0.1
435
Tumor
0.1
818
Normal
0.1
744
Normal
0.1
258
Normal
0.1
978
Normal
0.1
387
Tumor
0.1
1014
Normal
0.1
433
Tumor
0.1
384
Normal
0.1
981
Tumor
0.1
257
Tumor
0.1
984
Normal
0.1
1031
Tumor
0.1
921
Tumor
0.1
141
Tumor
0.1
628
Normal
0.1
366
Normal
0.1
641
Tumor
0.1
422
Normal
0.1
1021
Tumor
0.1
497
Tumor
0.1
447
Tumor
0.1
824
Normal
0.1
571
Tumor
0.1
545
Tumor
0.1
635
Tumor
0.1
353
Tumor
0.1
445
Tumor
0.1
964
Normal
0.1
186
Normal
0.1
1013
Tumor
0.0
312
Normal
0.0
618
Normal
0.0
171
Tumor
0.0
421
Tumor
0.0
777
Tumor
0.0
1015
Tumor
0.0
455
Tumor
0.0
957
Tumor
0.0
863
Tumor
0.0
882
Normal
0.0
572
Normal
0.0
756
Normal
0.0
913
Tumor
0.0
518
Normal
0.0
867
Tumor
0.0
664
Normal
0.0
311
Tumor
0.0
491
Tumor
0.0
1016
Normal
0.0
982
Normal
0.0
132
Normal
0.0
514
Normal
0.0
923
Tumor
0.0
327
Tumor
0.0
723
Tumor
0.0
136
Normal
0.0
616
Normal
0.0
975
Tumor
0.0
534
Normal
0.0
162
Normal
0.0
396
Normal
0.0
567
Tumor
0.0
883
Tumor
0.0
648
Normal
0.0
963
Tumor
0.0
471
Tumor
0.0
851
Tumor
0.0
878
Normal
0.0
516
Normal
0.0
386
Normal
0.0
283
Tumor
0.0
261
Tumor
0.0
642
Normal
0.0
483
Tumor
0.0
713
Tumor
0.0
914
Normal
0.0
983
Tumor
0.0
148
Normal
0.0
721
Tumor
0.0
526
Normal
0.0
286
Normal
0.0
1022
Normal
0.0
228
Normal
0.0
462
Normal
0.0
1041
Tumor
0.0
697
Tumor
0.0
915
Tumor
-0.1
513
Tumor
-0.1
728
Normal
-0.1
558
Normal
-0.1
224
Normal
-0.1
1042
Normal
-0.1
861
Tumor
-0.1
528
Normal
-0.1
874
Normal
-0.1
142
Normal
-0.1
976
Normal
-0.1
536
Normal
-0.1
786
Normal
-0.1
926
Normal
-0.1
1032
Normal
-0.1
925
Tumor
-0.1
742
Normal
-0.1
938
Normal
-0.1
363
Tumor
-0.1
911
Tumor
-0.1
817
Tumor
-0.1
924
Normal
-0.1
1026
Normal
-0.1
738
Normal
-0.1
977
Tumor
-0.1
412
Normal
-0.1
944
Normal
-0.1
727
Tumor
-0.1
958
Normal
-0.1
816
Normal
-0.1
968
Normal
-0.1
498
Normal
-0.1
686
Normal
-0.1
356
Normal
-0.1
617
Tumor
-0.1
922
Normal
-0.1
918
Normal
-0.1
284
Normal
-0.1
172
Normal
-0.1
866
Normal
-0.2
778
Normal
-0.2
862
Normal
-0.2
722
Normal
-0.2
557
Tumor
-0.2
715
Tumor
-0.2
478
Normal
-0.2
823
Tumor
-0.2
328
Normal
-0.2
953
Tumor
-0.2
355
Tumor
-0.2
1028
Normal
-0.2
966
Normal
-0.2
952
Normal
-0.2
487
Tumor
-0.2
488
Normal
-0.2
212
Normal
-0.2
525
Tumor
-0.2
955
Tumor
-0.2
956
Normal
-0.2
472
Normal
-0.2
1044
Normal
-0.2
481
Tumor
-0.2
857
Tumor
-0.2
695
Tumor
-0.2
1043
Tumor
-0.2
546
Normal
-0.2
524
Normal
-0.2
864
Normal
-0.2
954
Normal
-0.2
868
Normal
-0.2
493
Tumor
-0.2
852
Normal
-0.2
1045
Tumor
-0.2
535
Tumor
-0.2
416
Normal
-0.2
482
Normal
-0.3
492
Normal
-0.3
916
Normal
-0.3
746
Normal
-0.3
415
Tumor
-0.3
741
Tumor
-0.3
494
Normal
-0.3
538
Normal
-0.3
364
Normal
-0.3
474
Normal
-0.3
696
Normal
-0.3
1046
Normal
-0.3
448
Normal
-0.3
537
Tumor
-0.3
533
Tumor
-0.3
484
Normal
-0.3
755
Tumor
-0.3
477
Tumor
-0.4
698
Normal
-0.4
716
Normal
-0.4
473
Tumor
-0.5
554
Normal
-0.5
785
Tumor
-0.5
745
Tumor
-0.5
553
Tumor
-0.5
714
Normal
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
