BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:242.5 nTPM
HPA Brain:82.5 nTPM
GTEx:242.5 nTPM
FANTOM5:174.8 Scaled Tags Per Million

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 82.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 71.2
2846 Female, age 79, unknown 82.4
2290 Female, age 72, unknown 82.2
1857 Female, age 85, left hemisphere 77.4
2288 Male, age 75, left hemisphere 70.9
1781 Male, age 74, unknown 69.2
2481 Female, age 94, left hemisphere 67.4
1854 Male, age 80, left hemisphere 61.6
2289 Male, age 61, right hemisphere 58.4
Globus pallidus, externus
nTPM: 37.5
2646 Male, age 61, right hemisphere 49.7
2395 Male, age 75, both hemispheres 36.4
2567 Female, age 72, unknown 35.3
2772 Female, age 79, unknown 35.1
1996 Male, age 80, right hemisphere 31.1
Globus pallidus, internus
nTPM: 35.9
2483 Female, age 94, right hemisphere 56.1
1818 Male, age 74, unknown 42.5
2287 Male, age 75, right hemisphere 38.4
2566 Female, age 72, unknown 38.2
2778 Female, age 91, both hemispheres 28.8
2037 Male, age 80, right hemisphere 28.3
2111 Female, age 85, right hemisphere 19.2
Nucleus accumbens
nTPM: 67.7
2698 Female, age 72, unknown 96.1
1856 Female, age 91, right hemisphere 95.4
1806 Female, age 85, left hemisphere 66.7
1783 Male, age 74, unknown 66.3
2286 Male, age 75, left hemisphere 65.1
2824 Male, age 61, right hemisphere 59.5
2391 Female, age 94, left hemisphere 48.4
2732 Male, age 80, right hemisphere 43.7
Nucleus basalis of Meynert
nTPM: 56.6
2821 Male, age 75, both hemispheres 68.0
2393 Male, age 80, right hemisphere 55.9
2484 Female, age 94, left hemisphere 53.1
2569 Male, age 61, both hemispheres 49.5
Nucleus of the diagonal band
nTPM: 79.6
2195 Female, age 85, both hemispheres 108.9
2775 Male, age 80, right hemisphere 83.3
1812 Female, age 91, both hemispheres 75.1
1979 Male, age 74, unknown 73.8
2029 Male, age 61, right hemisphere 56.8
Putamen
nTPM: 64.2
1838 Male, age 80, right hemisphere 71.7
1937 Female, age 91, right hemisphere 69.9
1829 Male, age 74, unknown 68.7
2482 Female, age 94, left hemisphere 63.0
2489 Female, age 72, unknown 62.5
2647 Male, age 75, left hemisphere 62.2
2466 Female, age 79, unknown 51.1
Septal nuclei
nTPM: 71.3
2629 Female, age 94, right hemisphere 108.7
1960 Male, age 74, unknown 81.7
2059 Female, age 85, both hemispheres 76.4
2199 Male, age 80, right hemisphere 64.8
2009 Female, age 91, both hemispheres 63.0
2031 Female, age 72, unknown 53.4
2394 Male, age 61, left hemisphere 50.9
Stria terminalis, bed nucleus
nTPM: 82.5
2486 Female, age 94, both hemispheres 85.8
2201 Male, age 74, unknown 82.4
1974 Female, age 91, both hemispheres 79.3

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 242.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 189.0
Samples: 246

Max nTPM: 483.1
Min nTPM: 77.9
Std nTPM: 62.5
Median nTPM: 183.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 483.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 383.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 379.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 372.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 355.7
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 346.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 339.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 324.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 318.4
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 311.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 310.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 242.5
Samples: 246

Max nTPM: 406.5
Min nTPM: 92.9
Std nTPM: 66.4
Median nTPM: 245.1
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 406.5
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 373.9
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 373.7
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 373.0
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 370.4
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 359.3
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 358.5
GTEX-1C6VR-0011-R6a-SM-7MXU8 60-69 years, male 357.3
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 357.1
GTEX-1F6I4-0011-R6a-SM-CE6R4 60-69 years, male 356.3
GTEX-13O3Q-0011-R6a-SM-5KM2V 50-59 years, male 353.7
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Brain - Putamen (basal ganglia)
Average nTPM: 184.9
Samples: 205

Max nTPM: 325.8
Min nTPM: 68.7
Std nTPM: 57.6
Median nTPM: 181.2
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 325.8
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 317.1
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 315.3
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 314.6
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 302.9
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 298.1
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 288.0
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 285.8
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 285.6
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 285.1
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 283.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 174.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 123.8
FF:10164-103B2 76 years, female 123.8
Nucleus accumbens
Scaled Tags Per Million: 133.1
FF:10037-101F1 23-56 years, mixed 133.1
Putamen
Scaled Tags Per Million: 174.8
FF:10176-103C5 60 years, female 174.8
Globus pallidus
Scaled Tags Per Million: 82.5
FF:10175-103C4 60 years, female 115.3
FF:10161-103A8 76 years, female 49.7

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