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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
80.2
nTPM
FANTOM5:
126.5
Scaled Tags Per Million
Pig:
109.2
nTPM
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
80.2
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 69.4
1984
Male, age 76, both hemispheres
96.2
2301
Female, age 85, both hemispheres
79.1
2188
Female, age 91, both hemispheres
59.2
2090
Male, age 80, both hemispheres
43.2
Dorsal cochlear nucleus nTPM: 60.6
2802
Male, age 74, right hemisphere
69.1
2187
Female, age 91, both hemispheres
68.6
2378
Male, age 80, both hemispheres
60.3
2370
Male, age 61, both hemispheres
55.1
2058
Male, age 76, both hemispheres
50.2
Dorsal tegmental nucleus nTPM: 66.5
2083
Male, age 80, both hemispheres
75.4
1936
Male, age 76, left hemisphere
67.1
2326
Male, age 74, both hemispheres
63.3
2358
Male, age 61, both hemispheres
60.5
Dorsolateral tegmental area nTPM: 68.2
2337
Male, age 61, both hemispheres
76.6
2654
Male, age 80, both hemispheres
72.7
2141
Male, age 76, both hemispheres
70.5
2360
Male, age 74, both hemispheres
66.9
2751
Female, age 85, both hemispheres
54.3
Kolliker-Fuse nucleus nTPM: 70.9
2793
Female, age 91, left hemisphere
77.4
2315
Male, age 76, right hemisphere
72.2
2163
Male, age 80, both hemispheres
63.0
Lateral lemniscal nuclei nTPM: 75.6
2320
Female, age 91, left hemisphere
82.9
2746
Female, age 85, left hemisphere
80.7
2453
Male, age 74, right hemisphere
76.2
2036
Male, age 80, both hemispheres
69.4
2169
Male, age 76, both hemispheres
68.7
Lateral parabrachial nucleus nTPM: 65.1
2139
Female, age 85, right hemisphere
83.2
2013
Male, age 80, both hemispheres
66.4
2792
Male, age 76, both hemispheres
61.9
2790
Male, age 61, both hemispheres
48.9
Lateral vestibular nucleus nTPM: 67.7
2311
Male, age 80, both hemispheres
68.7
2184
Male, age 76, both hemispheres
66.7
Locus coeruleus nTPM: 64.5
2317
Female, age 72, unknown
76.6
2123
Female, age 91, both hemispheres
72.0
2162
Male, age 80, both hemispheres
69.0
1980
Male, age 76, both hemispheres
65.4
2014
Male, age 55, unknown
62.9
2720
Male, age 74, both hemispheres
62.0
2788
Male, age 74, unknown
43.4
Medial parabrachial nucleus nTPM: 65.6
2463
Female, age 85, right hemisphere
83.8
2786
Male, age 76, both hemispheres
68.1
2170
Female, age 91, both hemispheres
65.6
2854
Male, age 80, both hemispheres
58.3
2156
Male, age 61, both hemispheres
52.4
Medial periolivary nuclei nTPM: 66.4
2171
Female, age 85, both hemispheres
77.8
2063
Male, age 76, both hemispheres
73.5
2791
Male, age 74, right hemisphere
62.9
2458
Female, age 91, both hemispheres
60.6
2081
Male, age 80, both hemispheres
57.5
Motor facial nucleus nTPM: 71.3
2327
Male, age 80, both hemispheres
82.0
2062
Male, age 76, both hemispheres
74.4
2795
Female, age 91, both hemispheres
72.3
2697
Female, age 85, both hemispheres
71.2
2126
Male, age 61, both hemispheres
64.0
2365
Male, age 74, right hemisphere
63.8
Motor trigeminal nucleus nTPM: 73.1
2560
Male, age 74, both hemispheres
88.4
2321
Female, age 91, both hemispheres
77.9
2079
Male, age 80, both hemispheres
71.1
2309
Male, age 76, both hemispheres
64.7
2335
Male, age 61, both hemispheres
63.5
Nuclei of the trapezoid body nTPM: 78.7
2159
Male, age 61, both hemispheres
86.6
2735
Female, age 85, both hemispheres
83.6
1983
Male, age 76, both hemispheres
83.4
2368
Female, age 91, both hemispheres
70.4
2166
Male, age 80, both hemispheres
69.7
Nucleus raphe magnus nTPM: 80.2
2328
Male, age 80, both hemispheres
92.3
2172
Female, age 85, both hemispheres
84.8
2160
Male, age 61, both hemispheres
83.4
2455
Male, age 74, both hemispheres
79.4
2051
Male, age 76, both hemispheres
71.3
2459
Female, age 91, both hemispheres
70.0
Paramedian reticular nucleus nTPM: 57.4
2313
Male, age 61, both hemispheres
67.3
2050
Female, age 85, both hemispheres
66.4
2057
Male, age 80, both hemispheres
57.1
2052
Male, age 76, both hemispheres
38.9
Pedunculopontine tegmental nucleus nTPM: 61.3
1921
Female, age 85, both hemispheres
68.5
2334
Male, age 80, both hemispheres
59.7
2338
Male, age 61, both hemispheres
55.7
Pontine nuclei nTPM: 80.1
2787
Female, age 85, both hemispheres
101.2
2109
Female, age 72, unknown
86.8
1968
Male, age 76, left hemisphere
86.7
1863
Male, age 55, unknown
79.2
2115
Male, age 80, left hemisphere
78.0
2727
Male, age 61, right hemisphere
75.5
2454
Male, age 74, left hemisphere
71.1
2319
Female, age 91, both hemispheres
62.4
Pontine raphe nucleus nTPM: 65.2
2853
Male, age 76, midline
71.8
2122
Female, age 85, midline
58.6
Posteroventral cochlear nucleus nTPM: 57.9
2070
Male, age 76, both hemispheres
73.8
2752
Female, age 85, both hemispheres
63.6
2371
Male, age 61, both hemispheres
55.4
2135
Female, age 91, both hemispheres
51.5
2341
Male, age 80, both hemispheres
45.5
Principal sensory trigeminal nucleus nTPM: 70.4
2158
Male, age 61, both hemispheres
77.9
2008
Male, age 80, left hemisphere
74.2
2324
Male, age 76, both hemispheres
69.0
2367
Female, age 91, left hemisphere
60.4
Reticular pontine nucleus, caudal nTPM: 79.4
2332
Male, age 80, right hemisphere
97.5
2457
Female, age 91, both hemispheres
79.7
2092
Male, age 76, both hemispheres
77.4
2559
Male, age 74, both hemispheres
63.0
Reticular pontine nucleus, oral nTPM: 67.1
2361
Male, age 74, both hemispheres
78.6
2366
Female, age 91, both hemispheres
73.2
2167
Male, age 76, both hemispheres
65.3
2012
Female, age 85, both hemispheres
61.1
1939
Male, age 80, both hemispheres
57.2
Reticulotegmental nucleus nTPM: 69.4
2333
Male, age 80, both hemispheres
75.6
2452
Male, age 74, both hemispheres
73.8
2325
Male, age 76, both hemispheres
65.1
2322
Female, age 91, both hemispheres
63.3
Spinal trigeminal nucleus, oral nTPM: 77.4
1978
Male, age 76, both hemispheres
82.5
2737
Female, age 85, both hemispheres
77.8
2164
Male, age 80, both hemispheres
71.9
Subcoeruleus area nTPM: 62.1
2451
Male, age 74, both hemispheres
66.4
1958
Male, age 80, both hemispheres
66.0
2323
Female, age 91, left hemisphere
63.6
2089
Male, age 76, left hemisphere
62.3
2369
Female, age 85, left hemisphere
52.2
Superior olive nTPM: 76.0
2329
Male, age 80, right hemisphere
82.0
2561
Female, age 91, both hemispheres
78.9
1875
Female, age 85, both hemispheres
77.0
2020
Male, age 76, both hemispheres
72.0
2364
Male, age 74, right hemisphere
70.0
Ventral periolivary nuclei nTPM: 66.0
2165
Male, age 80, both hemispheres
79.6
2023
Male, age 76, both hemispheres
66.1
2794
Female, age 91, left hemisphere
61.5
2130
Female, age 85, both hemispheres
56.8
Ventrolateral tegmental area, A5 NE cell group nTPM: 65.9
2449
Male, age 74, both hemispheres
77.5
2161
Male, age 80, both hemispheres
76.4
1959
Male, age 76, both hemispheres
70.8
2456
Female, age 91, both hemispheres
66.6
2840
Female, age 85, both hemispheres
55.8
2359
Male, age 61, both hemispheres
48.0
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
The Human Protein Atlas project is funded
