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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TMED9 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
75.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
247.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
201.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
181.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
180.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
177.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
172.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
171.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
171.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
164.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
160.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
152.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
151.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
149.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
145.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
143.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
138.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
136.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
135.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
133.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
133.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
132.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
132.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
129.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
127.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
127.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
125.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
125.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
124.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
123.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
122.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
122.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
121.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
121.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
120.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
118.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
117.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
111.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
111.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
111.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
110.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
110.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
110.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
110.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
109.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
107.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
106.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
106.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
106.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
106.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
106.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
106.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
106.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
105.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
103.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
102.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
102.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
101.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
101.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
101.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
101.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
100.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
100.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
100.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
98.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
98.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
98.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
97.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
97.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
97.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
96.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
96.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
96.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
96.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
96.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
96.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
96.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
95.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
95.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
95.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
94.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
94.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
94.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
94.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
93.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
93.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
92.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
92.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
92.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
92.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
91.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
90.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
90.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
90.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
90.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
89.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
89.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
89.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
89.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
89.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
88.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
88.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
88.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
88.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
88.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
88.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
87.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
87.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
87.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
86.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
86.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
86.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
86.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
85.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
85.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
85.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
85.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
85.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
85.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
84.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
84.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
83.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
83.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
83.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
83.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
83.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
83.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
82.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
82.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
82.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
81.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
81.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
81.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
81.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
81.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
81.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
81.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
81.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
81.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
80.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
80.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
80.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
80.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
80.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
79.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
79.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
79.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
79.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
79.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
79.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
77.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
77.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
77.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
76.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
76.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
76.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
75.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
75.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
75.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
75.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
75.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
75.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
75.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
75.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
74.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
74.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
74.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
73.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
73.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
73.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
73.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
73.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
73.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
73.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
73.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
72.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
72.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
72.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
71.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
71.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
71.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
70.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
70.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
70.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
70.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
69.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
69.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
68.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
68.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
68.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
68.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
67.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
67.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
66.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
66.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
66.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
66.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
66.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
66.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
65.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
65.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
65.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
65.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
65.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
65.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
65.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
65.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
64.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
64.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
64.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
63.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
63.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
63.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
63.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
63.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
63.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
63.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
63.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
63.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
63.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
63.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
62.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
62.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
62.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
61.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
61.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
61.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
61.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
61.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
61.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
60.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
60.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
60.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
60.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
60.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
60.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
60.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
60.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
60.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
59.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
59.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
59.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
59.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
59.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
59.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
59.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
59.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
58.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
57.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
57.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
57.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
57.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
57.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
57.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
56.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
56.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
55.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
55.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
55.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
55.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
54.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
54.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
54.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
53.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
53.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
53.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
53.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
53.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
53.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
53.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
52.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
52.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
52.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
52.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
52.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
52.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
52.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
51.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
51.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
51.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
51.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
51.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
51.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
50.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
50.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
49.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
49.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
49.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
49.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
49.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
48.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
48.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
48.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
48.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
48.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
48.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
48.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
48.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
48.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
47.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
47.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
47.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
47.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
47.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
46.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
46.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
46.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
45.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
45.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
45.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
44.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
44.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
44.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
43.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
43.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
43.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
43.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
43.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
42.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
42.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
42.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
42.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
42.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
41.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
41.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
41.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
41.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
41.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
41.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
41.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
40.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
40.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
40.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
40.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
40.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
39.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
39.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
39.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
38.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
38.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
38.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
37.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
37.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
36.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
36.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
36.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
35.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
35.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
35.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
35.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
35.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
34.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
34.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
33.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
32.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
31.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
30.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
29.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
29.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
27.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
26.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
26.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TMED9 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
147.4
Number of samples
231
Samples
Sample
Description
TPM
DO45119
0 years, male, NA, stage:3, dead, 510 days
520.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
387.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
355.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
345.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
311.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
306.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
302.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
298.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
297.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
295.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
294.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
287.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
258.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
253.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
247.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
246.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
243.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
238.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
232.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
230.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
225.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
220.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
219.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
218.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
216.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
216.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
214.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
211.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
206.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
205.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
205.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
204.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
201.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
201.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
201.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
200.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
200.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
200.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
199.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
199.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
197.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
195.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
194.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
193.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
192.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
191.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
190.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
190.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
189.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
185.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
185.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
185.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
184.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
182.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
181.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
180.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
179.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
179.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
179.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
177.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
176.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
176.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
174.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
172.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
172.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
171.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
171.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
171.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
170.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
169.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
169.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
168.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
168.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
168.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
167.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
166.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
166.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
164.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
163.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
163.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
163.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
163.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
163.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
162.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
161.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
160.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
157.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
156.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
156.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
155.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
154.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
153.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
152.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
151.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
150.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
149.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
149.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
147.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
145.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
144.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
143.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
142.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
142.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
140.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
140.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
140.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
139.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
139.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
139.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
139.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
138.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
138.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
137.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
135.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
135.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
134.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
132.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
131.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
131.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
131.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
131.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
130.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
130.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
128.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
126.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
124.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
124.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
124.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
123.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
123.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
123.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
122.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
121.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
121.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
120.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
120.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
120.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
120.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
119.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
119.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
119.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
119.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
119.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
118.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
117.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
117.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
116.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
116.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
115.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
115.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
114.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
113.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
113.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
113.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
110.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
110.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
109.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
109.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
109.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
109.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
106.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
106.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
105.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
105.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
104.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
104.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
103.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
102.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
102.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
101.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
101.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
101.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
100.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
100.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
100.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
99.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
97.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
97.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
96.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
96.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
95.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
94.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
94.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
94.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
94.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
94.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
94.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
93.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
93.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
93.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
93.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
93.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
93.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
92.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
91.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
91.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
91.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
91.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
91.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
90.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
89.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
88.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
87.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
87.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
87.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
84.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
84.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
83.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
82.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
80.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
79.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
78.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
78.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
78.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
77.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
77.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
77.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
77.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
74.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
71.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
70.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
69.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
68.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
63.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
62.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
62.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
59.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
59.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
58.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
58.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
38.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
527
Tumor
0.8
533
Tumor
0.7
857
Tumor
0.7
445
Tumor
0.6
523
Tumor
0.6
913
Tumor
0.5
911
Tumor
0.5
363
Tumor
0.5
443
Tumor
0.5
481
Tumor
0.5
497
Tumor
0.5
285
Tumor
0.5
553
Tumor
0.5
135
Tumor
0.4
713
Tumor
0.4
557
Tumor
0.4
721
Tumor
0.4
937
Tumor
0.4
112
Tumor
0.4
353
Tumor
0.4
145
Tumor
0.4
1025
Tumor
0.4
615
Tumor
0.3
471
Tumor
0.3
635
Tumor
0.3
227
Tumor
0.3
357
Tumor
0.3
331
Tumor
0.3
515
Tumor
0.3
433
Tumor
0.3
728
Normal
0.3
332
Normal
0.3
617
Tumor
0.3
393
Tumor
0.3
823
Tumor
0.3
368
Normal
0.3
1044
Normal
0.3
231
Tumor
0.3
883
Tumor
0.3
385
Tumor
0.3
257
Tumor
0.3
195
Tumor
0.3
554
Normal
0.3
387
Tumor
0.3
524
Normal
0.3
473
Tumor
0.3
952
Normal
0.3
435
Tumor
0.3
955
Tumor
0.3
636
Normal
0.3
351
Tumor
0.3
487
Tumor
0.2
114
Normal
0.2
938
Normal
0.2
137
Tumor
0.2
983
Tumor
0.2
392
Normal
0.2
147
Tumor
0.2
1045
Tumor
0.2
526
Normal
0.2
431
Tumor
0.2
696
Normal
0.2
148
Normal
0.2
514
Normal
0.2
128
Normal
0.2
978
Normal
0.2
261
Tumor
0.2
1043
Tumor
0.2
813
Tumor
0.2
187
Tumor
0.2
723
Tumor
0.2
922
Normal
0.2
376
Normal
0.2
956
Normal
0.2
817
Tumor
0.2
492
Normal
0.2
124
Normal
0.2
298
Normal
0.2
518
Normal
0.2
861
Tumor
0.2
642
Normal
0.2
327
Tumor
0.2
745
Tumor
0.2
232
Normal
0.2
865
Tumor
0.2
558
Normal
0.2
412
Normal
0.2
426
Normal
0.2
218
Normal
0.2
966
Normal
0.1
214
Normal
0.1
111
Normal
0.1
685
Tumor
0.1
212
Normal
0.1
488
Normal
0.1
697
Tumor
0.1
545
Tumor
0.1
873
Tumor
0.1
314
Normal
0.1
755
Tumor
0.1
852
Normal
0.1
528
Normal
0.1
571
Tumor
0.1
944
Normal
0.1
1014
Normal
0.1
228
Normal
0.1
132
Normal
0.1
918
Normal
0.1
262
Normal
0.1
572
Normal
0.1
698
Normal
0.1
546
Normal
0.1
851
Tumor
0.1
358
Normal
0.1
383
Tumor
0.1
877
Tumor
0.1
223
Tumor
0.1
746
Normal
0.1
136
Normal
0.1
267
Tumor
0.1
1022
Normal
0.1
142
Normal
0.1
568
Normal
0.1
284
Normal
0.1
468
Normal
0.1
912
Normal
0.1
1021
Tumor
0.1
484
Normal
0.1
738
Normal
0.1
686
Normal
0.1
172
Normal
0.1
616
Normal
0.1
671
Tumor
0.1
1027
Tumor
0.1
452
Normal
0.1
462
Normal
0.1
1032
Normal
0.1
777
Tumor
0.1
958
Normal
0.1
925
Tumor
0.1
984
Normal
0.1
564
Normal
0.1
743
Tumor
0.1
663
Tumor
0.1
221
Tumor
0.1
423
Tumor
0.1
478
Normal
0.1
963
Tumor
0.1
977
Tumor
0.1
628
Normal
0.1
534
Normal
0.1
474
Normal
0.1
924
Normal
0.1
665
Tumor
0.1
864
Normal
0.1
162
Normal
0.1
312
Normal
0.1
388
Normal
0.1
272
Normal
0.1
342
Normal
0.1
482
Normal
0.1
563
Tumor
0.1
627
Tumor
0.1
434
Normal
0.1
278
Normal
0.1
538
Normal
0.0
394
Normal
0.0
1026
Normal
0.0
463
Tumor
0.0
1046
Normal
0.0
618
Normal
0.0
191
Tumor
0.0
354
Normal
0.0
964
Normal
0.0
778
Normal
0.0
436
Normal
0.0
536
Normal
0.0
498
Normal
0.0
384
Normal
0.0
127
Tumor
0.0
867
Tumor
0.0
641
Tumor
0.0
467
Tumor
0.0
664
Normal
0.0
574
Normal
0.0
196
Normal
0.0
648
Normal
0.0
967
Tumor
0.0
258
Normal
0.0
662
Normal
0.0
446
Normal
0.0
1042
Normal
0.0
926
Normal
0.0
411
Tumor
0.0
976
Normal
0.0
647
Tumor
0.0
535
Tumor
0.0
414
Normal
0.0
448
Normal
0.0
923
Tumor
0.0
362
Normal
0.0
427
Tumor
0.0
1028
Normal
0.0
138
Normal
0.0
277
Tumor
0.0
386
Normal
0.0
672
Normal
0.0
188
Normal
0.0
695
Tumor
0.0
954
Normal
0.0
981
Tumor
0.0
714
Normal
0.0
461
Tumor
0.0
422
Normal
0.0
466
Normal
0.0
858
Normal
0.0
975
Tumor
0.0
171
Tumor
0.0
516
Normal
0.0
271
Tumor
0.0
186
Normal
0.0
396
Normal
0.0
344
Normal
0.0
727
Tumor
0.0
953
Tumor
0.0
395
Tumor
0.0
366
Normal
0.0
356
Normal
0.0
1016
Normal
0.0
361
Tumor
0.0
343
Tumor
0.0
741
Tumor
0.0
722
Normal
0.0
268
Normal
0.0
666
Normal
0.0
126
Normal
0.0
494
Normal
0.0
868
Normal
0.0
517
Tumor
0.0
432
Normal
0.0
421
Tumor
0.0
472
Normal
0.0
146
Normal
0.0
715
Tumor
0.0
224
Normal
0.0
1015
Tumor
0.0
525
Tumor
0.0
131
Tumor
0.0
814
Normal
0.0
365
Tumor
0.0
982
Normal
0.0
968
Normal
0.0
914
Normal
0.0
862
Normal
0.0
447
Tumor
0.0
352
Normal
0.0
416
Normal
-0.1
328
Normal
-0.1
756
Normal
-0.1
815
Tumor
-0.1
742
Normal
-0.1
716
Normal
-0.1
355
Tumor
-0.1
744
Normal
-0.1
185
Tumor
-0.1
141
Tumor
-0.1
824
Normal
-0.1
222
Normal
-0.1
213
Tumor
-0.1
951
Tumor
-0.1
874
Normal
-0.1
1041
Tumor
-0.1
424
Normal
-0.1
785
Tumor
-0.1
375
Tumor
-0.1
217
Tumor
-0.1
455
Tumor
-0.1
878
Normal
-0.1
863
Tumor
-0.1
286
Normal
-0.1
884
Normal
-0.1
364
Normal
-0.1
451
Tumor
-0.1
456
Normal
-0.1
113
Tumor
-0.1
415
Tumor
-0.1
491
Tumor
-0.1
816
Normal
-0.1
464
Normal
-0.1
297
Tumor
-0.1
866
Normal
-0.1
737
Tumor
-0.2
413
Tumor
-0.2
818
Normal
-0.2
567
Tumor
-0.2
786
Normal
-0.2
573
Tumor
-0.2
881
Tumor
-0.2
882
Normal
-0.2
957
Tumor
-0.2
367
Tumor
-0.2
428
Normal
-0.2
916
Normal
-0.2
915
Tumor
-0.2
493
Tumor
-0.2
313
Tumor
-0.2
192
Normal
-0.2
444
Normal
-0.2
123
Tumor
-0.2
513
Tumor
-0.2
724
Normal
-0.2
125
Tumor
-0.2
661
Tumor
-0.2
1031
Tumor
-0.2
211
Tumor
-0.3
943
Tumor
-0.3
161
Tumor
-0.3
483
Tumor
-0.3
283
Tumor
-0.3
921
Tumor
-0.3
391
Tumor
-0.4
917
Tumor
-0.4
537
Tumor
-0.4
425
Tumor
-0.4
965
Tumor
-0.4
341
Tumor
-0.5
477
Tumor
-0.5
1013
Tumor
-0.6
465
Tumor
-0.6
311
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
