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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NDUFA12 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
100.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
253.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
235.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
231.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
231.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
207.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
201.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
200.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
196.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
192.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
187.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
182.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
180.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
178.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
177.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
175.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
172.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
171.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
167.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
163.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
160.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
160.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
160.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
158.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
157.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
156.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
155.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
154.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
153.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
152.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
152.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
151.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
151.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
151.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
151.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
150.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
149.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
148.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
147.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
145.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
145.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
140.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
140.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
140.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
138.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
138.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
138.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
137.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
136.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
136.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
135.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
135.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
135.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
134.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
133.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
133.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
133.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
133.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
132.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
132.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
131.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
131.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
131.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
131.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
131.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
130.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
129.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
129.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
129.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
128.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
127.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
127.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
127.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
126.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
126.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
126.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
125.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
124.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
124.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
124.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
123.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
123.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
123.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
123.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
122.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
121.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
121.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
121.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
121.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
120.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
119.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
119.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
119.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
119.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
119.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
118.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
118.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
118.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
118.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
117.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
117.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
116.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
116.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
116.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
115.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
115.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
114.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
113.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
113.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
113.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
113.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
112.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
112.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
112.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
112.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
111.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
110.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
110.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
110.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
109.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
108.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
108.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
108.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
108.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
108.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
106.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
106.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
105.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
105.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
105.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
104.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
103.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
103.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
103.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
103.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
103.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
103.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
102.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
102.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
102.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
102.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
101.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
101.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
101.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
101.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
101.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
100.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
100.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
100.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
100.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
100.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
99.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
99.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
99.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
99.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
99.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
99.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
99.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
98.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
98.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
98.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
98.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
98.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
98.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
97.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
97.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
97.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
97.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
97.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
97.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
96.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
96.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
96.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
96.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
95.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
95.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
94.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
94.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
93.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
93.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
93.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
93.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
93.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
93.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
93.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
92.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
92.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
92.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
91.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
91.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
91.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
90.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
90.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
90.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
90.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
90.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
90.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
89.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
89.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
89.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
88.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
88.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
88.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
88.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
87.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
87.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
87.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
87.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
87.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
86.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
86.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
86.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
86.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
86.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
86.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
85.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
85.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
85.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
85.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
84.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
84.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
84.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
84.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
84.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
84.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
84.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
83.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
83.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
83.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
83.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
82.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
82.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
82.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
81.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
81.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
81.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
81.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
80.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
80.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
80.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
80.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
80.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
79.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
79.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
79.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
79.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
78.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
78.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
78.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
78.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
78.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
78.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
78.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
77.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
77.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
77.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
76.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
76.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
75.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
75.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
75.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
75.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
75.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
74.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
74.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
74.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
74.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
74.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
74.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
74.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
73.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
73.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
73.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
73.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
73.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
72.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
72.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
72.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
72.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
72.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
72.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
72.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
71.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
71.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
71.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
71.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
71.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
71.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
70.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
70.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
70.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
70.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
70.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
70.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
70.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
70.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
70.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
70.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
69.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
69.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
69.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
69.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
69.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
69.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
69.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
68.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
68.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
68.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
68.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
68.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
68.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
67.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
67.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
67.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
67.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
67.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
66.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
66.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
66.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
65.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
65.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
64.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
64.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
64.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
64.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
64.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
64.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
63.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
63.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
63.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
62.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
62.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
62.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
61.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
61.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
61.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
61.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
61.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
61.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
60.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
59.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
59.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
59.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
58.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
58.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
58.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
57.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
57.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
56.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
55.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
54.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
52.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
50.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
50.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
49.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
49.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
46.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
46.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
45.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
43.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
42.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
40.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NDUFA12 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
77.3
Number of samples
231
Samples
Sample
Description
TPM
DO50829
0 years, male, NA, stage:3, alive, 570 days
278.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
244.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
209.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
197.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
180.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
176.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
163.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
160.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
157.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
146.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
140.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
134.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
128.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
126.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
124.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
123.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
118.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
118.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
114.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
114.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
112.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
110.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
110.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
108.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
106.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
105.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
104.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
103.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
102.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
102.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
102.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
101.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
98.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
97.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
96.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
96.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
95.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
95.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
95.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
94.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
93.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
93.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
93.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
93.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
93.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
92.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
92.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
91.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
91.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
91.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
91.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
91.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
90.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
90.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
90.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
89.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
89.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
88.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
87.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
87.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
87.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
87.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
86.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
86.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
86.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
85.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
85.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
85.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
84.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
84.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
84.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
84.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
83.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
83.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
83.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
81.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
81.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
81.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
81.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
80.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
80.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
80.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
80.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
79.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
79.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
79.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
79.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
79.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
78.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
77.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
77.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
77.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
77.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
76.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
76.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
76.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
76.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
75.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
75.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
75.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
75.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
74.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
74.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
74.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
73.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
73.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
73.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
73.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
72.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
72.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
71.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
71.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
71.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
71.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
71.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
71.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
71.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
70.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
69.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
69.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
69.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
69.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
69.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
68.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
68.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
68.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
68.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
68.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
68.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
68.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
67.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
67.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
67.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
67.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
67.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
67.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
67.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
66.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
66.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
65.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
64.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
64.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
64.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
64.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
64.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
64.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
63.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
63.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
63.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
63.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
63.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
62.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
61.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
61.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
60.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
60.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
60.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
59.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
59.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
59.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
59.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
59.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
58.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
58.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
58.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
58.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
57.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
57.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
57.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
57.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
57.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
57.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
57.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
56.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
56.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
55.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
55.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
54.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
54.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
54.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
54.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
54.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
54.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
53.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
53.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
53.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
53.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
53.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
53.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
52.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
52.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
52.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
52.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
51.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
51.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
51.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
51.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
51.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
50.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
50.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
50.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
49.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
49.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
49.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
49.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
48.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
48.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
48.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
48.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
48.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
47.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
47.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
47.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
47.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
47.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
45.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
45.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
45.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
45.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
44.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
42.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
42.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
41.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
41.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
40.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
39.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
39.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
36.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
35.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
22.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
20.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
356
Normal
0.9
466
Normal
0.8
128
Normal
0.8
564
Normal
0.8
514
Normal
0.8
314
Normal
0.8
148
Normal
0.7
722
Normal
0.7
756
Normal
0.7
922
Normal
0.7
572
Normal
0.7
944
Normal
0.7
1032
Normal
0.7
742
Normal
0.7
388
Normal
0.7
132
Normal
0.7
716
Normal
0.6
1014
Normal
0.6
327
Tumor
0.6
723
Tumor
0.6
568
Normal
0.6
162
Normal
0.6
616
Normal
0.6
232
Normal
0.6
278
Normal
0.6
648
Normal
0.6
926
Normal
0.6
984
Normal
0.6
1022
Normal
0.6
1028
Normal
0.6
866
Normal
0.6
1041
Tumor
0.6
426
Normal
0.6
528
Normal
0.6
728
Normal
0.6
1046
Normal
0.6
482
Normal
0.6
446
Normal
0.6
981
Tumor
0.6
714
Normal
0.6
448
Normal
0.6
864
Normal
0.6
696
Normal
0.6
698
Normal
0.6
432
Normal
0.6
558
Normal
0.6
914
Normal
0.6
636
Normal
0.6
642
Normal
0.6
878
Normal
0.6
358
Normal
0.5
958
Normal
0.5
915
Tumor
0.5
628
Normal
0.5
664
Normal
0.5
738
Normal
0.5
488
Normal
0.5
328
Normal
0.5
1042
Normal
0.5
376
Normal
0.5
172
Normal
0.5
912
Normal
0.5
954
Normal
0.5
858
Normal
0.5
554
Normal
0.5
818
Normal
0.5
964
Normal
0.5
462
Normal
0.5
494
Normal
0.5
412
Normal
0.5
114
Normal
0.5
1043
Tumor
0.5
778
Normal
0.5
484
Normal
0.5
516
Normal
0.5
686
Normal
0.5
526
Normal
0.5
451
Tumor
0.5
258
Normal
0.5
518
Normal
0.5
422
Normal
0.5
464
Normal
0.5
364
Normal
0.5
695
Tumor
0.5
136
Normal
0.5
196
Normal
0.5
456
Normal
0.4
416
Normal
0.4
666
Normal
0.4
468
Normal
0.4
1044
Normal
0.4
267
Tumor
0.4
571
Tumor
0.4
212
Normal
0.4
424
Normal
0.4
982
Normal
0.4
617
Tumor
0.4
284
Normal
0.4
918
Normal
0.4
111
Normal
0.4
713
Tumor
0.4
394
Normal
0.4
816
Normal
0.4
938
Normal
0.4
786
Normal
0.4
298
Normal
0.4
414
Normal
0.4
214
Normal
0.4
228
Normal
0.4
824
Normal
0.4
138
Normal
0.4
546
Normal
0.4
534
Normal
0.4
342
Normal
0.4
312
Normal
0.4
262
Normal
0.4
362
Normal
0.4
852
Normal
0.4
662
Normal
0.3
352
Normal
0.3
171
Tumor
0.3
436
Normal
0.3
188
Normal
0.3
474
Normal
0.3
1026
Normal
0.3
574
Normal
0.3
874
Normal
0.3
618
Normal
0.3
746
Normal
0.3
222
Normal
0.3
1016
Normal
0.3
224
Normal
0.3
956
Normal
0.3
868
Normal
0.3
916
Normal
0.3
286
Normal
0.3
231
Tumor
0.3
396
Normal
0.3
366
Normal
0.3
452
Normal
0.3
952
Normal
0.3
142
Normal
0.3
272
Normal
0.3
473
Tumor
0.3
978
Normal
0.3
415
Tumor
0.3
126
Normal
0.3
924
Normal
0.3
332
Normal
0.3
955
Tumor
0.3
647
Tumor
0.3
428
Normal
0.3
524
Normal
0.2
968
Normal
0.2
882
Normal
0.2
861
Tumor
0.2
268
Normal
0.2
344
Normal
0.2
146
Normal
0.2
354
Normal
0.2
672
Normal
0.2
862
Normal
0.2
127
Tumor
0.2
423
Tumor
0.2
976
Normal
0.2
368
Normal
0.2
392
Normal
0.2
434
Normal
0.2
715
Tumor
0.2
113
Tumor
0.2
615
Tumor
0.1
867
Tumor
0.1
472
Normal
0.1
538
Normal
0.1
913
Tumor
0.1
112
Tumor
0.1
341
Tumor
0.1
384
Normal
0.1
145
Tumor
0.1
477
Tumor
0.1
627
Tumor
0.1
223
Tumor
0.1
744
Normal
0.1
124
Normal
0.1
186
Normal
0.1
966
Normal
0.1
218
Normal
0.1
721
Tumor
0.1
487
Tumor
0.1
444
Normal
0.1
755
Tumor
0.1
498
Normal
0.1
873
Tumor
0.0
192
Normal
0.0
393
Tumor
0.0
884
Normal
0.0
386
Normal
0.0
557
Tumor
0.0
536
Normal
0.0
911
Tumor
0.0
478
Normal
0.0
195
Tumor
0.0
465
Tumor
0.0
261
Tumor
0.0
355
Tumor
0.0
135
Tumor
0.0
1015
Tumor
0.0
1031
Tumor
-0.1
573
Tumor
-0.1
977
Tumor
-0.1
357
Tumor
-0.1
697
Tumor
-0.1
857
Tumor
-0.1
227
Tumor
-0.1
435
Tumor
-0.1
445
Tumor
-0.1
1021
Tumor
-0.1
191
Tumor
-0.1
641
Tumor
-0.1
161
Tumor
-0.1
743
Tumor
-0.2
567
Tumor
-0.2
492
Normal
-0.2
467
Tumor
-0.2
497
Tumor
-0.2
923
Tumor
-0.2
523
Tumor
-0.2
741
Tumor
-0.2
663
Tumor
-0.2
943
Tumor
-0.2
525
Tumor
-0.2
431
Tumor
-0.2
963
Tumor
-0.2
635
Tumor
-0.2
387
Tumor
-0.2
217
Tumor
-0.3
351
Tumor
-0.3
413
Tumor
-0.3
481
Tumor
-0.3
185
Tumor
-0.3
563
Tumor
-0.3
527
Tumor
-0.3
447
Tumor
-0.3
271
Tumor
-0.3
553
Tumor
-0.3
533
Tumor
-0.3
361
Tumor
-0.3
917
Tumor
-0.3
814
Normal
-0.3
493
Tumor
-0.3
411
Tumor
-0.3
367
Tumor
-0.3
213
Tumor
-0.3
877
Tumor
-0.4
211
Tumor
-0.4
187
Tumor
-0.4
1045
Tumor
-0.4
517
Tumor
-0.4
483
Tumor
-0.4
353
Tumor
-0.4
433
Tumor
-0.4
471
Tumor
-0.4
443
Tumor
-0.4
817
Tumor
-0.4
881
Tumor
-0.4
363
Tumor
-0.4
257
Tumor
-0.4
965
Tumor
-0.4
395
Tumor
-0.4
724
Normal
-0.4
427
Tumor
-0.4
785
Tumor
-0.5
957
Tumor
-0.5
277
Tumor
-0.5
313
Tumor
-0.5
141
Tumor
-0.5
823
Tumor
-0.5
131
Tumor
-0.5
491
Tumor
-0.5
865
Tumor
-0.5
391
Tumor
-0.5
863
Tumor
-0.5
383
Tumor
-0.5
123
Tumor
-0.5
375
Tumor
-0.5
463
Tumor
-0.5
285
Tumor
-0.5
661
Tumor
-0.5
665
Tumor
-0.5
137
Tumor
-0.5
147
Tumor
-0.6
953
Tumor
-0.6
513
Tumor
-0.6
975
Tumor
-0.6
815
Tumor
-0.6
983
Tumor
-0.6
297
Tumor
-0.6
461
Tumor
-0.6
221
Tumor
-0.6
937
Tumor
-0.6
455
Tumor
-0.6
851
Tumor
-0.6
331
Tumor
-0.6
883
Tumor
-0.6
951
Tumor
-0.7
311
Tumor
-0.7
1025
Tumor
-0.7
813
Tumor
-0.7
545
Tumor
-0.7
365
Tumor
-0.7
921
Tumor
-0.7
343
Tumor
-0.7
1013
Tumor
-0.7
727
Tumor
-0.7
421
Tumor
-0.7
515
Tumor
-0.7
283
Tumor
-0.8
671
Tumor
-0.8
535
Tumor
-0.8
745
Tumor
-0.8
385
Tumor
-0.8
1027
Tumor
-0.8
537
Tumor
-0.8
925
Tumor
-0.9
685
Tumor
-0.9
967
Tumor
-0.9
777
Tumor
-0.9
425
Tumor
-1.0
737
Tumor
-1.0
125
Tumor
-1.0
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
