MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:135.3 nTPM
HPA Brain:56.7 nTPM
GTEx:135.3 nTPM
FANTOM5:110.7 Scaled Tags Per Million
Pig:217.8 nTPM
Mouse:338.4 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 56.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 43.2
2019 Male, age 18, unknown 62.4
1870 Female, age 42, unknown 50.7
1827 Male, age 72, unknown 46.3
2666 Male, age 74, left hemisphere 45.4
2411 Female, age 72, unknown 42.4
2219 Male, age 76, both hemispheres 41.1
1833 Male, age 53, unknown 40.4
2828 Female, age 72, unknown 38.2
1830 Male, age 51, unknown 35.8
2586 Male, age 75, left hemisphere 29.5
Dorsal raphe nucleus
nTPM: 48.4
2298 Female, age 72, unknown 55.8
1828 Male, age 53, unknown 54.1
2750 Male, age 76, both hemispheres 48.3
2047 Male, age 72, unknown 44.9
2016 Female, age 72, unknown 38.8
Inferior colliculus
nTPM: 52.5
2097 Female, age 72, unknown 60.3
1890 Male, age 53, unknown 53.9
1848 Female, age 42, unknown 50.4
2849 Male, age 72, unknown 45.4
Median raphe nucleus
nTPM: 50.6
2220 Male, age 76, midline 50.6
Periaquaductal grey, anterior
nTPM: 43.4
1795 Male, age 51, unknown 45.9
1947 Male, age 18, unknown 43.4
2502 Female, age 75, unknown 40.9
Periaquaductal grey, dorsal
nTPM: 41.2
2850 Male, age 76, both hemispheres 49.3
1831 Male, age 72, unknown 42.4
1840 Male, age 53, unknown 39.6
2464 Female, age 72, unknown 33.3
Periaquaductal grey, lateral
nTPM: 40.3
2272 Male, age 74, both hemispheres 45.9
2053 Male, age 18, unknown 37.5
2140 Male, age 76, both hemispheres 37.3
Pretectal area
nTPM: 56.7
2007 Male, age 72, unknown 79.2
1816 Male, age 51, unknown 72.9
1817 Female, age 42, unknown 70.2
1944 Female, age 72, unknown 64.9
1815 Male, age 53, unknown 61.3
2667 Female, age 75, unknown 53.6
2224 Female, age 72, unknown 52.5
2273 Male, age 74, both hemispheres 47.1
2407 Male, age 75, both hemispheres 41.5
2825 Male, age 18, unknown 40.5
2316 Male, age 76, right hemisphere 40.3
Red nucleus
nTPM: 49.2
1821 Female, age 72, unknown 69.3
2725 Female, age 75, unknown 62.4
2785 Male, age 18, unknown 55.0
2503 Female, age 72, unknown 49.2
1865 Male, age 51, unknown 48.6
2823 Male, age 76, right hemisphere 48.5
2769 Male, age 72, unknown 45.3
2584 Male, age 75, left hemisphere 44.7
1904 Male, age 53, unknown 44.6
1954 Female, age 42, unknown 44.6
2227 Male, age 72, unknown 41.9
2588 Male, age 74, left hemisphere 36.5
Substantia nigra
nTPM: 53.0
1889 Female, age 72, unknown 77.2
1916 Female, age 42, unknown 70.9
1851 Male, age 51, unknown 58.9
2665 Male, age 74, both hemispheres 57.1
1941 Male, age 53, unknown 56.9
2241 Male, age 72, unknown 52.5
2699 Male, age 18, unknown 47.7
2409 Female, age 72, unknown 38.0
2590 Female, age 75, unknown 38.0
2583 Male, age 75, right hemisphere 33.2
Superior colliculus
nTPM: 46.6
2087 Female, age 72, unknown 57.3
1895 Male, age 76, right hemisphere 57.1
2668 Female, age 75, unknown 52.4
2587 Male, age 74, left hemisphere 52.1
1796 Male, age 53, unknown 48.4
1913 Female, age 42, unknown 43.9
2261 Male, age 18, unknown 42.9
1995 Male, age 72, unknown 41.8
1839 Male, age 51, unknown 41.2
2664 Male, age 75, both hemispheres 28.9
Ventral tegmental area
nTPM: 48.6
2218 Male, age 76, both hemispheres 58.5
1915 Female, age 42, unknown 56.4
2410 Female, age 72, unknown 51.8
2223 Female, age 72, unknown 48.7
1942 Male, age 51, unknown 39.2
2021 Male, age 53, unknown 37.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 135.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 135.3
Samples: 139

Max nTPM: 275.1
Min nTPM: 79.8
Std nTPM: 33.7
Median nTPM: 129.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 275.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 259.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 218.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 204.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 200.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 199.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 197.8
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 195.5
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 195.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 194.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 191.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 110.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 110.7
FF:10158-103A5 76 years, female 110.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 217.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 153.7
Samples: 4

Max nTPM: 188.2
Min nTPM: 130.3
Sample A Female 188.2
Sample B Female 130.3
Sample C Male 160.5
Sample D Male 135.9
Midbrain
nTPM: 185.8
Samples: 4

Max nTPM: 210.3
Min nTPM: 167.9
Sample A Female 183.9
Sample B Female 167.9
Sample C Male 210.3
Sample D Male 180.9
Periaqueductal gray
nTPM: 147.0
Samples: 3

Max nTPM: 151.3
Min nTPM: 139.3
Sample B Female 151.3
Sample C Male 150.4
Sample D Male 139.3
Superior colliculi
nTPM: 217.8
Samples: 4

Max nTPM: 261.0
Min nTPM: 178.5
Sample A Female 241.4
Sample B Female 178.5
Sample C Male 261.0
Sample D Male 190.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 338.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 338.4
Samples: 4

Max nTPM: 368.1
Min nTPM: 297.5
Sample A Male 368.1
Sample B Male 332.2
Sample C Female 297.5
Sample D Female 355.7

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