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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
167.9
Sample id
Sample description
nTPM
Amygdala nTPM: 167.9
2814
Male, age 76, right hemisphere
324.4
2695
Female, age 67, right hemisphere
154.1
2517
Female, age 94, left hemisphere
128.0
2514
Male, age 75, right hemisphere
118.1
1987
Female, age 91, left hemisphere
114.7
Basal amygdala nTPM: 157.7
1955
Male, age 76, both hemispheres
197.2
2243
Female, age 91, right hemisphere
182.6
2685
Female, age 94, left hemisphere
160.2
2110
Male, age 80, left hemisphere
139.7
2609
Male, age 75, right hemisphere
136.2
2827
Female, age 67, right hemisphere
130.2
Central amygdala nTPM: 164.8
1905
Male, age 76, both hemispheres
284.0
2826
Female, age 94, left hemisphere
177.9
2239
Male, age 80, left hemisphere
143.1
2701
Female, age 91, right hemisphere
122.0
2515
Male, age 75, right hemisphere
96.8
Corticomedial amygdala nTPM: 143.7
2242
Female, age 91, right hemisphere
158.4
2829
Male, age 80, left hemisphere
150.3
2240
Male, age 76, both hemispheres
150.2
2429
Female, age 94, left hemisphere
149.0
2535
Female, age 67, right hemisphere
148.8
2428
Male, age 75, right hemisphere
105.8
Lateral amygdala nTPM: 152.4
1883
Male, age 76, both hemispheres
277.7
2534
Female, age 94, left hemisphere
184.9
2516
Male, age 75, right hemisphere
121.6
2830
Female, age 67, right hemisphere
119.3
2255
Female, age 91, right hemisphere
110.9
2256
Male, age 80, left hemisphere
99.7
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
139.7
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 139.7
Samples: 152
Max nTPM: 400.9
Min nTPM: 3.4
Std nTPM: 58.9
Median nTPM: 138.9
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
400.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
351.2
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
295.1
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
280.2
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
254.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
235.1
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
234.8
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
229.8
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
228.4
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
222.6
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
219.1
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
218.6
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
216.9
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
215.3
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
214.4
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
213.1
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
210.6
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
208.0
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
207.4
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
200.0
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
199.5
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
199.3
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
198.6
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
196.9
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
194.8
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
192.1
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
191.3
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
191.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
189.8
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
187.0
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
186.9
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
184.8
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
182.2
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
180.5
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
180.3
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
176.7
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
174.3
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
174.0
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
173.3
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
171.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
171.4
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
167.5
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
165.9
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
165.0
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
164.3
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
163.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
163.2
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
161.4
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
161.3
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
161.2
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
151.6
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
151.4
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
150.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
149.9
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
148.9
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
148.6
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
147.7
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
147.6
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
147.3
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
146.8
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
146.1
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
145.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
144.2
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
144.0
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
143.3
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
142.5
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
142.1
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
142.0
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
142.0
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
141.1
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
141.0
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
140.4
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
140.4
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
139.9
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
139.5
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
138.9
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
138.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
138.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
135.3
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
135.1
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
134.9
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
133.4
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
133.1
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
131.1
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
131.1
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
128.3
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
128.1
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
126.1
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
125.9
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
125.8
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
124.1
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
123.9
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
123.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
122.6
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
121.9
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
120.4
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
120.0
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
119.7
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
117.3
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
115.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
113.8
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
113.6
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
113.2
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
111.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
108.5
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
104.2
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
104.0
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
103.6
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
100.9
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
100.6
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
100.6
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
99.9
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
98.5
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
98.2
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
97.8
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
97.1
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
95.3
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
94.1
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
93.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
93.1
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
91.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
89.0
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
88.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
88.7
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
86.5
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
85.0
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
84.8
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
81.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
79.9
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
78.1
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
77.6
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
76.5
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
75.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
73.8
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
71.3
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
70.6
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
70.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
69.0
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
68.9
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
67.9
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
66.5
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
60.9
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
60.3
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
57.5
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
56.2
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
54.7
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
53.8
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
51.6
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
47.8
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
36.8
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
32.2
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
3.4
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
265.5
Mouse sample
Sample description
nTPM
Amygdala nTPM: 265.5
Samples: 4
Max nTPM: 293.0
Min nTPM: 248.0
Sample A
Male
270.6
Sample B
Male
250.2
Sample C
Female
293.0
Sample D
Female
248.0
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
