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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PROS1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
45.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
178.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
169.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
146.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
142.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
137.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
137.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
135.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
134.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
133.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
132.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
129.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
120.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
118.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
114.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
114.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
111.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
110.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
108.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
108.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
108.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
105.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
104.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
101.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
101.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
100.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
98.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
96.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
95.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
94.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
93.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
93.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
92.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
92.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
92.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
92.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
92.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
91.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
90.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
89.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
89.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
88.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
88.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
88.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
88.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
87.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
86.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
85.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
84.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
84.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
84.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
83.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
83.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
82.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
82.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
81.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
81.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
80.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
79.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
79.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
79.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
79.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
77.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
77.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
77.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
76.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
75.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
75.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
75.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
74.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
73.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
73.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
73.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
72.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
72.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
71.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
71.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
70.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
70.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
70.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
69.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
69.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
69.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
69.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
68.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
68.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
68.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
68.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
68.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
67.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
67.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
67.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
67.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
66.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
66.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
65.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
65.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
65.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
65.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
64.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
64.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
63.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
63.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
62.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
62.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
62.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
62.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
61.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
61.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
61.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
61.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
61.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
61.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
60.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
60.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
60.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
60.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
60.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
59.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
59.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
59.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
59.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
58.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
58.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
58.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
58.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
58.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
57.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
57.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
57.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
56.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
56.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
56.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
56.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
56.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
55.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
55.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
55.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
55.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
54.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
54.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
54.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
53.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
52.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
52.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
52.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
51.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
51.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
51.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
50.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
50.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
50.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
50.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
50.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
49.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
49.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
49.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
49.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
49.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
48.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
48.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
48.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
47.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
47.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
47.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
46.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
46.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
45.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
45.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
45.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
45.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
44.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
44.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
44.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
44.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
44.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
44.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
43.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
43.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
43.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
43.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
42.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
42.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
42.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
41.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
41.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
41.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
41.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
40.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
40.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
40.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
40.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
40.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
40.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
38.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
38.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
37.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
37.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
36.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
36.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
35.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
35.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
35.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
34.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
33.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
32.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
32.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
32.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
32.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
32.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
31.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
31.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
30.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
30.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
30.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
30.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
29.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
29.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
29.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
29.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
28.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
28.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
28.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
28.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
28.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
27.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
27.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
27.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
27.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
27.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
26.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
26.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
25.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
24.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
24.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
24.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
24.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
24.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
23.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
23.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
23.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
23.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
23.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
22.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
22.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
21.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
21.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
21.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
21.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
21.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
20.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
20.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
20.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
19.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
19.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
18.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
18.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
18.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
18.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
18.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
17.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
17.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
17.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
17.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
17.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
17.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
17.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
16.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
16.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
16.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
16.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
16.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
15.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
15.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
15.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
14.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
13.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
13.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
13.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
13.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
13.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
13.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
13.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
13.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
12.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
12.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
12.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
12.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
12.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
12.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
12.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
12.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
11.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
11.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
11.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
11.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
10.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
10.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
10.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
10.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
10.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
10.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
9.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
9.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
9.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
9.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
9.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
9.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
9.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
8.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
8.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
8.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
8.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
8.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
8.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
8.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
8.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
8.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
8.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
8.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
7.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
7.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
7.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
7.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
7.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
7.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
6.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
6.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
6.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
6.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
5.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
5.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
5.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
4.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
4.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
3.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
2.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
2.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
2.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PROS1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
64.2
Number of samples
231
Samples
Sample
Description
TPM
DO50850
0 years, male, NA, stage:3, alive, 720 days
219.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
166.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
164.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
158.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
143.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
137.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
135.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
132.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
128.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
127.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
123.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
120.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
120.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
117.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
117.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
116.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
116.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
114.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
114.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
113.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
112.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
112.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
112.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
112.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
111.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
109.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
106.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
105.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
104.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
103.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
103.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
102.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
102.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
101.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
100.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
100.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
100.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
98.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
98.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
98.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
97.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
94.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
94.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
94.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
93.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
92.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
91.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
90.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
90.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
90.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
89.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
89.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
89.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
87.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
87.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
86.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
86.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
84.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
84.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
84.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
84.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
83.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
83.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
82.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
82.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
82.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
81.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
81.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
81.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
80.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
80.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
79.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
79.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
79.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
78.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
77.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
77.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
77.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
75.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
75.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
74.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
74.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
74.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
74.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
74.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
73.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
73.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
72.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
72.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
71.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
70.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
70.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
70.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
70.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
70.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
69.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
68.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
68.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
68.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
67.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
67.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
67.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
67.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
66.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
65.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
64.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
64.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
64.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
63.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
62.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
62.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
61.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
61.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
61.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
61.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
61.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
60.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
60.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
60.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
60.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
60.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
59.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
59.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
59.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
59.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
58.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
58.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
58.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
57.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
57.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
56.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
56.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
55.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
55.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
55.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
54.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
54.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
54.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
54.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
54.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
54.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
54.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
54.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
53.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
53.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
50.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
49.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
49.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
49.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
48.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
48.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
47.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
46.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
45.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
44.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
44.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
43.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
43.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
43.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
43.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
43.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
42.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
42.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
42.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
42.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
42.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
41.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
41.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
41.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
41.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
40.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
40.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
39.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
38.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
38.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
38.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
38.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
37.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
37.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
37.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
36.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
36.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
36.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
35.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
33.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
33.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
32.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
32.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
31.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
30.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
29.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
28.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
28.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
28.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
28.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
28.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
26.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
26.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
26.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
26.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
25.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
24.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
24.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
23.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
23.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
22.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
21.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
20.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
20.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
19.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
17.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
14.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
14.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
14.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
13.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
13.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
13.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
12.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
11.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
11.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
11.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
10.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
10.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
6.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
5.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
4.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
2.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
1.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
1.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
1.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
1.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
983
Tumor
1.5
527
Tumor
1.4
523
Tumor
1.4
343
Tumor
1.2
877
Tumor
1.1
395
Tumor
1.1
137
Tumor
1.0
937
Tumor
0.9
921
Tumor
0.9
863
Tumor
0.9
713
Tumor
0.9
257
Tumor
0.8
125
Tumor
0.8
375
Tumor
0.8
865
Tumor
0.8
445
Tumor
0.8
745
Tumor
0.8
737
Tumor
0.8
925
Tumor
0.7
815
Tumor
0.7
671
Tumor
0.7
328
Normal
0.7
813
Tumor
0.7
135
Tumor
0.7
477
Tumor
0.7
1021
Tumor
0.6
951
Tumor
0.6
421
Tumor
0.6
553
Tumor
0.6
192
Normal
0.6
1027
Tumor
0.6
533
Tumor
0.6
697
Tumor
0.5
661
Tumor
0.5
663
Tumor
0.5
517
Tumor
0.5
525
Tumor
0.4
953
Tumor
0.4
391
Tumor
0.4
567
Tumor
0.4
227
Tumor
0.4
741
Tumor
0.4
1045
Tumor
0.4
778
Normal
0.4
361
Tumor
0.4
195
Tumor
0.4
1015
Tumor
0.3
393
Tumor
0.3
455
Tumor
0.3
665
Tumor
0.3
884
Normal
0.3
431
Tumor
0.3
913
Tumor
0.3
428
Normal
0.3
142
Normal
0.3
351
Tumor
0.3
515
Tumor
0.2
368
Normal
0.2
823
Tumor
0.2
964
Normal
0.2
981
Tumor
0.2
817
Tumor
0.2
618
Normal
0.2
461
Tumor
0.2
423
Tumor
0.2
471
Tumor
0.2
883
Tumor
0.2
915
Tumor
0.2
755
Tumor
0.2
1046
Normal
0.2
722
Normal
0.2
491
Tumor
0.2
223
Tumor
0.2
535
Tumor
0.2
636
Normal
0.2
957
Tumor
0.2
526
Normal
0.1
615
Tumor
0.1
558
Normal
0.1
616
Normal
0.1
938
Normal
0.1
342
Normal
0.1
357
Tumor
0.1
967
Tumor
0.1
627
Tumor
0.1
452
Normal
0.1
545
Tumor
0.1
1041
Tumor
0.1
648
Normal
0.1
785
Tumor
0.1
1042
Normal
0.1
443
Tumor
0.1
396
Normal
0.1
816
Normal
0.1
497
Tumor
0.1
536
Normal
0.1
268
Normal
0.1
746
Normal
0.1
113
Tumor
0.1
283
Tumor
0.1
271
Tumor
0.1
922
Normal
0.1
538
Normal
0.0
685
Tumor
0.0
857
Tumor
0.0
686
Normal
0.0
367
Tumor
0.0
132
Normal
0.0
344
Normal
0.0
963
Tumor
0.0
414
Normal
0.0
387
Tumor
0.0
224
Normal
0.0
672
Normal
0.0
433
Tumor
0.0
977
Tumor
0.0
617
Tumor
0.0
814
Normal
0.0
524
Normal
0.0
564
Normal
0.0
924
Normal
0.0
574
Normal
0.0
474
Normal
0.0
868
Normal
0.0
285
Tumor
0.0
447
Tumor
0.0
514
Normal
0.0
518
Normal
0.0
232
Normal
0.0
818
Normal
0.0
468
Normal
0.0
424
Normal
0.0
715
Tumor
0.0
952
Normal
0.0
426
Normal
0.0
392
Normal
0.0
635
Tumor
0.0
425
Tumor
0.0
573
Tumor
0.0
354
Normal
0.0
546
Normal
0.0
483
Tumor
0.0
124
Normal
0.0
628
Normal
0.0
554
Normal
0.0
228
Normal
0.0
138
Normal
-0.1
327
Tumor
-0.1
358
Normal
-0.1
642
Normal
-0.1
557
Tumor
-0.1
918
Normal
-0.1
866
Normal
-0.1
563
Tumor
-0.1
1028
Normal
-0.1
261
Tumor
-0.1
488
Normal
-0.1
568
Normal
-0.1
727
Tumor
-0.1
297
Tumor
-0.1
191
Tumor
-0.1
467
Tumor
-0.1
364
Normal
-0.1
451
Tumor
-0.1
352
Normal
-0.1
383
Tumor
-0.1
944
Normal
-0.1
917
Tumor
-0.1
666
Normal
-0.1
494
Normal
-0.1
141
Tumor
-0.1
1016
Normal
-0.1
513
Tumor
-0.1
286
Normal
-0.1
462
Normal
-0.1
696
Normal
-0.1
353
Tumor
-0.1
465
Tumor
-0.1
744
Normal
-0.1
427
Tumor
-0.1
882
Normal
-0.1
528
Normal
-0.1
145
Tumor
-0.1
331
Tumor
-0.1
355
Tumor
-0.1
136
Normal
-0.1
464
Normal
-0.2
968
Normal
-0.2
161
Tumor
-0.2
858
Normal
-0.2
498
Normal
-0.2
313
Tumor
-0.2
147
Tumor
-0.2
413
Tumor
-0.2
446
Normal
-0.2
472
Normal
-0.2
146
Normal
-0.2
126
Normal
-0.2
912
Normal
-0.2
1022
Normal
-0.2
466
Normal
-0.2
284
Normal
-0.2
218
Normal
-0.2
384
Normal
-0.2
956
Normal
-0.2
448
Normal
-0.2
756
Normal
-0.2
148
Normal
-0.2
262
Normal
-0.2
422
Normal
-0.2
786
Normal
-0.2
572
Normal
-0.2
926
Normal
-0.2
914
Normal
-0.2
394
Normal
-0.2
878
Normal
-0.2
864
Normal
-0.2
714
Normal
-0.2
185
Tumor
-0.2
258
Normal
-0.2
1044
Normal
-0.2
444
Normal
-0.2
365
Tumor
-0.2
982
Normal
-0.2
186
Normal
-0.2
432
Normal
-0.2
723
Tumor
-0.2
267
Tumor
-0.2
954
Normal
-0.3
131
Tumor
-0.3
376
Normal
-0.3
534
Normal
-0.3
217
Tumor
-0.3
456
Normal
-0.3
187
Tumor
-0.3
958
Normal
-0.3
111
Normal
-0.3
188
Normal
-0.3
537
Tumor
-0.3
984
Normal
-0.3
1026
Normal
-0.3
716
Normal
-0.3
923
Tumor
-0.3
1014
Normal
-0.3
824
Normal
-0.3
386
Normal
-0.3
738
Normal
-0.3
742
Normal
-0.3
114
Normal
-0.3
492
Normal
-0.3
852
Normal
-0.3
874
Normal
-0.3
172
Normal
-0.3
493
Tumor
-0.3
312
Normal
-0.3
221
Tumor
-0.3
867
Tumor
-0.3
976
Normal
-0.3
196
Normal
-0.3
724
Normal
-0.3
662
Normal
-0.3
416
Normal
-0.3
862
Normal
-0.3
212
Normal
-0.3
777
Tumor
-0.3
1025
Tumor
-0.3
314
Normal
-0.3
482
Normal
-0.3
647
Tumor
-0.3
162
Normal
-0.3
388
Normal
-0.4
1043
Tumor
-0.4
436
Normal
-0.4
664
Normal
-0.4
128
Normal
-0.4
481
Tumor
-0.4
916
Normal
-0.4
415
Tumor
-0.4
366
Normal
-0.4
278
Normal
-0.4
478
Normal
-0.4
571
Tumor
-0.4
463
Tumor
-0.4
484
Normal
-0.4
641
Tumor
-0.4
112
Tumor
-0.4
881
Tumor
-0.4
362
Normal
-0.4
332
Normal
-0.4
695
Tumor
-0.4
698
Normal
-0.4
728
Normal
-0.4
1013
Tumor
-0.4
487
Tumor
-0.4
231
Tumor
-0.4
272
Normal
-0.4
341
Tumor
-0.4
356
Normal
-0.5
721
Tumor
-0.5
298
Normal
-0.5
412
Normal
-0.5
873
Tumor
-0.5
955
Tumor
-0.5
123
Tumor
-0.5
214
Normal
-0.5
363
Tumor
-0.5
975
Tumor
-0.5
516
Normal
-0.5
861
Tumor
-0.5
978
Normal
-0.5
966
Normal
-0.5
311
Tumor
-0.5
222
Normal
-0.5
434
Normal
-0.6
213
Tumor
-0.6
435
Tumor
-0.6
943
Tumor
-0.6
743
Tumor
-0.6
965
Tumor
-0.6
1032
Normal
-0.6
277
Tumor
-0.6
127
Tumor
-0.7
851
Tumor
-0.7
911
Tumor
-0.7
411
Tumor
-0.8
385
Tumor
-0.8
473
Tumor
-0.9
1031
Tumor
-0.9
171
Tumor
-1.0
211
Tumor
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
