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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TXNRD2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
36.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
164.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
134.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
128.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
115.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
105.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
103.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
98.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
85.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
85.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
81.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
81.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
79.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
77.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
77.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
76.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
75.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
73.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
70.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
70.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
70.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
70.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
70.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
70.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
69.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
68.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
67.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
66.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
65.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
65.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
64.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
64.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
62.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
62.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
61.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
60.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
60.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
60.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
59.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
59.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
59.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
59.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
58.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
57.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
57.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
57.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
57.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
57.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
57.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
56.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
55.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
55.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
54.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
54.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
54.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
54.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
53.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
53.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
53.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
52.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
52.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
52.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
51.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
51.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
51.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
51.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
50.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
50.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
50.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
50.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
49.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
49.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
49.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
48.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
48.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
47.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
47.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
47.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
47.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
46.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
46.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
46.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
46.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
46.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
46.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
46.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
45.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
45.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
45.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
44.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
44.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
44.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
44.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
44.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
43.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
43.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
43.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
42.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
42.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
41.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
41.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
41.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
41.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
41.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
41.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
41.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
41.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
40.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
40.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
40.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
40.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
40.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
40.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
39.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
39.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
39.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
39.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
39.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
39.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
39.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
39.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
39.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
39.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
39.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
38.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
38.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
38.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
38.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
38.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
38.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
38.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
37.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
37.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
37.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
37.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
37.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
37.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
37.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
37.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
37.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
36.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
36.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
36.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
36.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
36.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
36.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
36.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
35.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
35.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
35.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
35.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
35.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
35.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
35.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
35.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
35.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
35.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
35.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
34.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
34.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
34.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
34.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
34.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
34.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
33.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
33.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
33.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
33.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
33.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
33.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
33.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
33.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
33.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
33.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
33.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
33.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
33.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
32.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
32.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
32.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
32.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
32.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
32.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
32.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
32.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
32.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
32.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
32.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
32.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
32.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
31.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
31.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
31.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
31.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
31.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
31.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
31.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
31.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
31.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
31.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
31.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
31.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
31.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
31.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
31.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
30.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
30.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
30.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
30.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
30.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
30.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
30.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
29.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
29.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
29.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
29.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
29.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
29.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
29.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
29.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
29.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
29.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
29.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
28.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
28.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
28.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
28.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
28.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
28.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
28.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
28.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
27.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
27.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
27.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
27.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
27.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
27.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
27.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
27.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
26.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
26.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
26.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
26.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
26.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
26.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
25.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
25.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
25.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
25.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
25.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
25.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
25.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
25.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
25.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
25.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
25.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
25.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
25.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
25.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
24.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
24.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
24.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
24.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
24.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
24.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
24.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
24.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
24.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
24.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
24.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
24.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
23.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
23.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
23.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
23.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
23.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
23.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
22.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
22.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
22.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
22.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
22.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
22.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
22.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
22.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
21.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
21.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
21.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
21.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
21.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
20.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
20.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
20.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
20.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
20.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
20.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
20.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
20.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
19.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
19.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
19.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
19.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
19.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
19.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
19.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
19.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
19.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
18.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
18.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
18.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
18.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
18.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
18.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
18.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
18.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
18.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
18.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
18.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
17.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
17.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
17.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
17.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
17.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
16.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
16.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
16.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
16.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
16.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
16.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
16.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
16.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
15.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
15.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
15.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
15.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
15.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
14.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
14.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
14.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
14.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
14.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
14.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
13.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
13.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
13.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
13.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
13.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
13.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
12.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
12.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
12.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
11.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
11.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
10.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
10.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
10.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
9.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
9.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
8.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
8.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
7.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
7.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TXNRD2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
23.4
Number of samples
231
Samples
Sample
Description
TPM
DO50811
0 years, male, NA, stage:1, alive, 450 days
122.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
77.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
75.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
66.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
57.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
56.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
52.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
52.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
51.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
50.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
48.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
47.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
47.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
46.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
46.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
46.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
46.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
42.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
42.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
42.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
40.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
40.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
40.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
39.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
39.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
39.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
38.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
37.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
37.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
36.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
36.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
36.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
36.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
36.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
35.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
35.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
33.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
33.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
32.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
32.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
32.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
32.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
32.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
32.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
32.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
31.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
31.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
31.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
31.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
30.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
30.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
30.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
30.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
30.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
30.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
30.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
30.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
29.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
29.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
29.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
29.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
28.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
28.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
28.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
28.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
27.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
27.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
26.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
26.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
26.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
26.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
26.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
26.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
25.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
25.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
25.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
25.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
25.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
25.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
25.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
24.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
24.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
24.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
24.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
24.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
24.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
24.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
23.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
23.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
23.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
23.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
23.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
23.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
23.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
23.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
23.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
23.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
22.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
22.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
22.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
22.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
22.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
22.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
21.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
21.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
21.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
21.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
21.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
21.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
21.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
21.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
21.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
21.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
20.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
20.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
20.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
20.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
20.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
20.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
20.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
19.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
19.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
19.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
19.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
19.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
19.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
19.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
19.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
19.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
18.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
18.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
18.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
18.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
18.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
18.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
18.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
17.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
17.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
17.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
17.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
17.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
17.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
16.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
16.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
16.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
16.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
16.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
16.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
16.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
15.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
15.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
15.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
15.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
15.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
15.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
15.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
15.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
15.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
15.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
15.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
15.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
14.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
14.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
14.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
14.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
14.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
14.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
14.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
14.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
14.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
14.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
14.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
14.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
14.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
14.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
14.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
14.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
14.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
14.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
13.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
13.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
13.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
13.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
13.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
13.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
13.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
13.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
13.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
13.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
13.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
12.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
12.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
12.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
12.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
12.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
12.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
12.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
12.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
12.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
11.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
11.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
10.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
10.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
10.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
10.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
10.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
10.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
10.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
10.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
10.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
9.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
9.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
9.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
9.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
9.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
9.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
8.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
8.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
8.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
8.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
8.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
7.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
7.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
7.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
6.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
6.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
5.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1041
Tumor
1.0
443
Tumor
1.0
925
Tumor
0.9
361
Tumor
0.9
915
Tumor
0.8
341
Tumor
0.7
648
Normal
0.6
127
Tumor
0.6
128
Normal
0.6
162
Normal
0.6
231
Tumor
0.6
744
Normal
0.6
342
Normal
0.6
465
Tumor
0.5
123
Tumor
0.5
171
Tumor
0.5
636
Normal
0.5
148
Normal
0.5
132
Normal
0.5
452
Normal
0.5
186
Normal
0.5
124
Normal
0.5
172
Normal
0.5
358
Normal
0.5
376
Normal
0.4
232
Normal
0.4
394
Normal
0.4
534
Normal
0.4
1043
Tumor
0.4
388
Normal
0.4
392
Normal
0.4
298
Normal
0.4
564
Normal
0.4
937
Tumor
0.4
715
Tumor
0.4
356
Normal
0.4
466
Normal
0.4
615
Tumor
0.4
314
Normal
0.4
746
Normal
0.4
196
Normal
0.3
468
Normal
0.3
944
Normal
0.3
742
Normal
0.3
426
Normal
0.3
135
Tumor
0.3
868
Normal
0.3
145
Tumor
0.3
267
Tumor
0.3
574
Normal
0.3
278
Normal
0.3
642
Normal
0.3
618
Normal
0.3
114
Normal
0.3
563
Tumor
0.3
332
Normal
0.3
446
Normal
0.3
354
Normal
0.3
487
Tumor
0.3
396
Normal
0.3
878
Normal
0.3
142
Normal
0.3
627
Tumor
0.3
858
Normal
0.3
864
Normal
0.3
572
Normal
0.3
911
Tumor
0.3
526
Normal
0.3
352
Normal
0.2
1032
Normal
0.2
436
Normal
0.2
344
Normal
0.2
568
Normal
0.2
368
Normal
0.2
558
Normal
0.2
672
Normal
0.2
432
Normal
0.2
546
Normal
0.2
738
Normal
0.2
1014
Normal
0.2
464
Normal
0.2
222
Normal
0.2
428
Normal
0.2
977
Tumor
0.2
714
Normal
0.2
138
Normal
0.2
528
Normal
0.2
365
Tumor
0.2
191
Tumor
0.2
214
Normal
0.2
616
Normal
0.2
484
Normal
0.2
1022
Normal
0.2
261
Tumor
0.2
111
Normal
0.2
938
Normal
0.2
1015
Tumor
0.2
258
Normal
0.2
981
Tumor
0.2
414
Normal
0.2
1016
Normal
0.2
384
Normal
0.2
286
Normal
0.2
866
Normal
0.2
952
Normal
0.2
698
Normal
0.2
955
Tumor
0.2
488
Normal
0.1
662
Normal
0.1
554
Normal
0.1
366
Normal
0.1
513
Tumor
0.1
422
Normal
0.1
824
Normal
0.1
112
Tumor
0.1
1045
Tumor
0.1
136
Normal
0.1
312
Normal
0.1
664
Normal
0.1
515
Tumor
0.1
448
Normal
0.1
628
Normal
0.1
185
Tumor
0.1
451
Tumor
0.1
696
Normal
0.1
816
Normal
0.1
976
Normal
0.1
218
Normal
0.1
984
Normal
0.1
1028
Normal
0.1
862
Normal
0.1
421
Tumor
0.1
665
Tumor
0.1
786
Normal
0.1
921
Tumor
0.1
482
Normal
0.1
478
Normal
0.1
922
Normal
0.1
686
Normal
0.1
494
Normal
0.1
867
Tumor
0.1
423
Tumor
0.1
1025
Tumor
0.1
462
Normal
0.0
444
Normal
0.0
483
Tumor
0.0
721
Tumor
0.0
666
Normal
0.0
964
Normal
0.0
424
Normal
0.0
474
Normal
0.0
146
Normal
0.0
221
Tumor
0.0
954
Normal
0.0
517
Tumor
0.0
257
Tumor
0.0
1031
Tumor
0.0
728
Normal
0.0
823
Tumor
0.0
635
Tumor
0.0
882
Normal
0.0
195
Tumor
0.0
912
Normal
0.0
914
Normal
0.0
393
Tumor
0.0
818
Normal
0.0
412
Normal
0.0
756
Normal
0.0
362
Normal
0.0
284
Normal
0.0
873
Tumor
0.0
874
Normal
0.0
567
Tumor
0.0
918
Normal
0.0
1046
Normal
0.0
425
Tumor
0.0
778
Normal
0.0
713
Tumor
0.0
968
Normal
-0.1
456
Normal
-0.1
852
Normal
-0.1
518
Normal
-0.1
113
Tumor
-0.1
514
Normal
-0.1
435
Tumor
-0.1
716
Normal
-0.1
723
Tumor
-0.1
313
Tumor
-0.1
1026
Normal
-0.1
147
Tumor
-0.1
268
Normal
-0.1
975
Tumor
-0.1
126
Normal
-0.1
926
Normal
-0.1
524
Normal
-0.1
695
Tumor
-0.1
228
Normal
-0.1
641
Tumor
-0.1
571
Tumor
-0.1
331
Tumor
-0.1
445
Tumor
-0.1
387
Tumor
-0.1
851
Tumor
-0.1
328
Normal
-0.1
722
Normal
-0.1
217
Tumor
-0.1
924
Normal
-0.1
536
Normal
-0.1
367
Tumor
-0.1
272
Normal
-0.1
461
Tumor
-0.1
411
Tumor
-0.1
745
Tumor
-0.1
188
Normal
-0.2
327
Tumor
-0.2
477
Tumor
-0.2
137
Tumor
-0.2
978
Normal
-0.2
363
Tumor
-0.2
1044
Normal
-0.2
523
Tumor
-0.2
737
Tumor
-0.2
492
Normal
-0.2
958
Normal
-0.2
727
Tumor
-0.2
553
Tumor
-0.2
357
Tumor
-0.2
857
Tumor
-0.2
724
Normal
-0.2
386
Normal
-0.2
982
Normal
-0.2
473
Tumor
-0.2
497
Tumor
-0.2
187
Tumor
-0.2
383
Tumor
-0.2
472
Normal
-0.2
916
Normal
-0.2
364
Normal
-0.2
538
Normal
-0.2
161
Tumor
-0.2
785
Tumor
-0.2
434
Normal
-0.2
416
Normal
-0.2
516
Normal
-0.2
863
Tumor
-0.3
212
Normal
-0.3
966
Normal
-0.3
141
Tumor
-0.3
557
Tumor
-0.3
262
Normal
-0.3
535
Tumor
-0.3
271
Tumor
-0.3
671
Tumor
-0.3
956
Normal
-0.3
433
Tumor
-0.3
1042
Normal
-0.3
224
Normal
-0.3
471
Tumor
-0.3
498
Normal
-0.3
395
Tumor
-0.3
865
Tumor
-0.3
431
Tumor
-0.3
463
Tumor
-0.3
391
Tumor
-0.4
227
Tumor
-0.4
883
Tumor
-0.4
884
Normal
-0.4
983
Tumor
-0.4
755
Tumor
-0.4
192
Normal
-0.4
913
Tumor
-0.4
943
Tumor
-0.4
1027
Tumor
-0.4
533
Tumor
-0.4
277
Tumor
-0.4
537
Tumor
-0.5
741
Tumor
-0.5
967
Tumor
-0.5
1021
Tumor
-0.5
223
Tumor
-0.5
353
Tumor
-0.5
743
Tumor
-0.5
481
Tumor
-0.5
951
Tumor
-0.5
213
Tumor
-0.5
647
Tumor
-0.5
467
Tumor
-0.5
815
Tumor
-0.5
525
Tumor
-0.5
493
Tumor
-0.5
285
Tumor
-0.5
297
Tumor
-0.6
663
Tumor
-0.6
427
Tumor
-0.6
447
Tumor
-0.6
343
Tumor
-0.6
125
Tumor
-0.6
351
Tumor
-0.6
491
Tumor
-0.6
957
Tumor
-0.6
877
Tumor
-0.6
861
Tumor
-0.6
923
Tumor
-0.7
963
Tumor
-0.7
413
Tumor
-0.7
131
Tumor
-0.7
385
Tumor
-0.7
617
Tumor
-0.7
953
Tumor
-0.7
355
Tumor
-0.7
814
Normal
-0.7
573
Tumor
-0.8
1013
Tumor
-0.8
697
Tumor
-0.8
881
Tumor
-0.8
685
Tumor
-0.9
415
Tumor
-0.9
545
Tumor
-0.9
455
Tumor
-0.9
527
Tumor
-0.9
817
Tumor
-0.9
965
Tumor
-0.9
375
Tumor
-0.9
661
Tumor
-0.9
777
Tumor
-1.0
283
Tumor
-1.0
311
Tumor
-1.0
917
Tumor
-1.2
813
Tumor
-1.2
211
Tumor
-1.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
