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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
KNTC1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
49.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
27.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
25.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
24.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
23.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
22.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
21.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
20.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
20.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
19.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
18.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
18.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
18.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
17.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
16.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
16.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
16.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
15.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
15.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
15.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
14.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
14.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
14.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
13.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
13.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
12.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
12.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
12.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
12.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
11.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
11.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
11.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
11.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
10.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
10.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
10.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
10.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
10.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
10.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
10.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
10.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
10.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
10.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
9.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
9.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
9.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
9.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
9.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
9.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
9.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
9.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
9.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
9.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
8.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
8.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
8.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
8.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
8.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
8.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
8.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
8.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
8.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
8.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
8.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
8.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
8.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
8.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
8.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
8.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
8.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
8.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
7.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
7.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
7.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
7.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
7.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
7.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
7.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
7.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
7.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
7.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
7.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
7.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
7.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
6.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
6.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
6.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
6.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
6.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
6.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
6.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
6.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
6.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
6.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
6.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
6.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
6.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
6.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
6.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
6.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
5.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
5.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
5.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
5.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
5.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
4.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
4.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
4.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
4.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
4.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
4.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
4.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
4.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
4.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
4.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
4.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
4.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
4.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
4.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
4.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
4.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
4.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
4.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
4.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
4.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
4.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
4.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
3.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
3.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
3.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
3.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
3.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
3.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
3.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
3.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
3.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
3.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
3.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
3.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
3.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
3.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
3.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
3.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
3.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
3.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
3.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
3.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
3.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
3.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
3.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
3.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
3.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
3.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
3.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
3.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
3.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
3.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
3.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
3.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
3.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
3.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
3.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
2.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
2.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
2.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
2.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
2.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
2.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
2.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
2.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
2.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
2.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
2.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
2.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
2.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
2.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
2.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
2.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
2.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
2.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
2.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
2.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
2.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
2.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
2.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
2.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
2.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
2.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
2.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
2.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
2.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
2.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
2.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
2.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
2.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
2.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
2.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
2.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
2.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
2.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
2.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
1.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
1.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
1.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
1.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
1.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
1.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
1.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
1.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
1.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
1.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
1.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
1.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
1.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
1.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
1.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
1.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
1.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
1.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
1.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
1.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
1.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
1.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
1.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
1.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
1.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
1.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
1.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
1.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
1.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
1.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
1.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
1.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
1.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
1.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
1.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
1.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
1.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
1.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
1.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
1.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
1.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
1.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
1.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
1.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
1.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
1.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
1.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
1.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
1.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
1.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
1.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
1.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
1.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
1.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
KNTC1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.9
Number of samples
231
Samples
Sample
Description
TPM
DO50815
0 years, male, NA, stage:3, alive, 150 days
31.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
24.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
22.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
21.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
19.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
16.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
16.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
15.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
15.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
15.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
14.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
14.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
14.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
13.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
13.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
13.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
12.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
12.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
12.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
12.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
11.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
11.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
10.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
10.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
10.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
9.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
9.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
9.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
9.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
9.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
9.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
8.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
8.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
8.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
8.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
8.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
8.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
8.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
8.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
7.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
7.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
7.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
7.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
7.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
7.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
7.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
7.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
7.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
7.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
7.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
6.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
6.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
6.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
6.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
6.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
6.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
6.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
6.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
6.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
6.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
6.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
5.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
5.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
5.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
5.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
5.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
5.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
5.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
5.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
5.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
5.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
5.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
5.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
5.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
4.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
4.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
4.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
4.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
4.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
4.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
4.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
4.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
4.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
4.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
4.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
4.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
4.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
4.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
4.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
4.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
4.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
4.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
4.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
4.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
4.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
4.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
4.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
4.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
4.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
3.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
3.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
3.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
3.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
3.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
3.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
3.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
3.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
3.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
3.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
3.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
3.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
3.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
3.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
3.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
3.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
3.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
3.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
3.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
3.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
3.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
3.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
3.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
3.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
3.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
2.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
2.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
2.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
2.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
2.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
2.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
2.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
2.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
2.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
2.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
2.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
2.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
2.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
2.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
2.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
2.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
2.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
2.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
2.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
2.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
2.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
2.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
2.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
2.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
2.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
2.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
2.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
2.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
2.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
2.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
2.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
2.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
2.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
2.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
2.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
2.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
2.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
2.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
2.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
2.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
2.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
2.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
2.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
1.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
1.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
1.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
1.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
1.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
1.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
1.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
1.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
1.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
1.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
1.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
1.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
1.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
1.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
1.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
1.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
1.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
1.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
1.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
1.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
1.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
1.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
1.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
1.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
1.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
1.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
1.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
1.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
1.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
1.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
1.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
1.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
1.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
1.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
1.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
1.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
1.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
1.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
1.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
1.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
1.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
1.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
1.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
1.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
1.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
1.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
1.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
1.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
1.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
1.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
1.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
0.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
0.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
0.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
0.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
0.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
391
Tumor
1.5
463
Tumor
1.5
965
Tumor
1.4
351
Tumor
1.3
661
Tumor
1.3
413
Tumor
1.3
313
Tumor
1.2
953
Tumor
1.2
411
Tumor
1.2
211
Tumor
1.2
435
Tumor
1.2
951
Tumor
1.2
283
Tumor
1.1
357
Tumor
1.1
285
Tumor
1.1
445
Tumor
1.1
1013
Tumor
1.0
967
Tumor
1.0
387
Tumor
0.9
921
Tumor
0.9
385
Tumor
0.9
957
Tumor
0.9
647
Tumor
0.9
537
Tumor
0.9
983
Tumor
0.9
815
Tumor
0.8
277
Tumor
0.8
724
Normal
0.7
865
Tumor
0.7
331
Tumor
0.7
465
Tumor
0.7
343
Tumor
0.7
671
Tumor
0.6
695
Tumor
0.6
663
Tumor
0.6
743
Tumor
0.6
923
Tumor
0.6
523
Tumor
0.5
737
Tumor
0.5
427
Tumor
0.5
375
Tumor
0.5
425
Tumor
0.5
497
Tumor
0.5
367
Tumor
0.4
341
Tumor
0.4
517
Tumor
0.4
1021
Tumor
0.4
487
Tumor
0.4
161
Tumor
0.4
727
Tumor
0.3
571
Tumor
0.3
545
Tumor
0.3
358
Normal
0.3
131
Tumor
0.3
943
Tumor
0.3
473
Tumor
0.3
1031
Tumor
0.3
393
Tumor
0.2
567
Tumor
0.2
231
Tumor
0.2
883
Tumor
0.2
354
Normal
0.2
257
Tumor
0.2
123
Tumor
0.2
563
Tumor
0.1
352
Normal
0.1
447
Tumor
0.1
342
Normal
0.1
355
Tumor
0.1
525
Tumor
0.1
141
Tumor
0.1
431
Tumor
0.1
917
Tumor
0.1
533
Tumor
0.1
383
Tumor
0.1
493
Tumor
0.1
297
Tumor
0.1
267
Tumor
0.0
635
Tumor
0.0
573
Tumor
0.0
311
Tumor
0.0
535
Tumor
0.0
877
Tumor
0.0
217
Tumor
0.0
665
Tumor
0.0
568
Normal
0.0
755
Tumor
0.0
814
Normal
0.0
557
Tumor
0.0
185
Tumor
0.0
423
Tumor
0.0
741
Tumor
0.0
851
Tumor
0.0
187
Tumor
-0.1
975
Tumor
-0.1
483
Tumor
-0.1
361
Tumor
-0.1
443
Tumor
-0.1
491
Tumor
-0.1
471
Tumor
-0.1
271
Tumor
-0.1
477
Tumor
-0.1
861
Tumor
-0.1
344
Normal
-0.1
685
Tumor
-0.1
813
Tumor
-0.1
353
Tumor
-0.1
171
Tumor
-0.2
127
Tumor
-0.2
564
Normal
-0.2
1045
Tumor
-0.2
227
Tumor
-0.2
213
Tumor
-0.2
388
Normal
-0.2
778
Normal
-0.2
756
Normal
-0.2
314
Normal
-0.2
981
Tumor
-0.2
817
Tumor
-0.2
513
Tumor
-0.2
1043
Tumor
-0.2
428
Normal
-0.2
386
Normal
-0.2
482
Normal
-0.2
472
Normal
-0.2
172
Normal
-0.2
777
Tumor
-0.3
534
Normal
-0.3
526
Normal
-0.3
278
Normal
-0.3
258
Normal
-0.3
192
Normal
-0.3
112
Tumor
-0.3
966
Normal
-0.3
433
Tumor
-0.3
672
Normal
-0.3
481
Tumor
-0.3
527
Tumor
-0.3
478
Normal
-0.3
332
Normal
-0.3
1015
Tumor
-0.3
462
Normal
-0.3
455
Tumor
-0.3
468
Normal
-0.3
528
Normal
-0.3
648
Normal
-0.3
162
Normal
-0.3
977
Tumor
-0.3
546
Normal
-0.3
746
Normal
-0.3
666
Normal
-0.3
873
Tumor
-0.3
414
Normal
-0.3
312
Normal
-0.3
218
Normal
-0.3
464
Normal
-0.3
222
Normal
-0.4
394
Normal
-0.4
146
Normal
-0.4
125
Tumor
-0.4
214
Normal
-0.4
925
Tumor
-0.4
392
Normal
-0.4
356
Normal
-0.4
363
Tumor
-0.4
298
Normal
-0.4
424
Normal
-0.4
365
Tumor
-0.4
286
Normal
-0.4
195
Tumor
-0.4
467
Tumor
-0.4
697
Tumor
-0.4
268
Normal
-0.4
196
Normal
-0.4
1046
Normal
-0.4
664
Normal
-0.4
662
Normal
-0.4
964
Normal
-0.4
232
Normal
-0.4
142
Normal
-0.4
137
Tumor
-0.4
558
Normal
-0.4
421
Tumor
-0.4
138
Normal
-0.4
396
Normal
-0.4
364
Normal
-0.4
395
Tumor
-0.4
978
Normal
-0.4
976
Normal
-0.4
384
Normal
-0.4
572
Normal
-0.4
434
Normal
-0.4
272
Normal
-0.4
937
Tumor
-0.4
958
Normal
-0.4
224
Normal
-0.4
466
Normal
-0.4
148
Normal
-0.4
553
Tumor
-0.4
147
Tumor
-0.4
262
Normal
-0.4
145
Tumor
-0.4
456
Normal
-0.4
954
Normal
-0.4
952
Normal
-0.5
514
Normal
-0.5
448
Normal
-0.5
963
Tumor
-0.5
554
Normal
-0.5
538
Normal
-0.5
498
Normal
-0.5
786
Normal
-0.5
785
Tumor
-0.5
366
Normal
-0.5
191
Tumor
-0.5
136
Normal
-0.5
284
Normal
-0.5
518
Normal
-0.5
221
Tumor
-0.5
968
Normal
-0.5
1044
Normal
-0.5
362
Normal
-0.5
713
Tumor
-0.5
698
Normal
-0.5
881
Tumor
-0.5
426
Normal
-0.5
228
Normal
-0.5
422
Normal
-0.5
128
Normal
-0.5
446
Normal
-0.5
574
Normal
-0.5
135
Tumor
-0.5
432
Normal
-0.5
188
Normal
-0.5
111
Normal
-0.5
328
Normal
-0.5
132
Normal
-0.5
461
Tumor
-0.5
416
Normal
-0.5
451
Tumor
-0.5
911
Tumor
-0.6
126
Normal
-0.6
474
Normal
-0.6
956
Normal
-0.6
982
Normal
-0.6
186
Normal
-0.6
368
Normal
-0.6
515
Tumor
-0.6
124
Normal
-0.6
488
Normal
-0.6
212
Normal
-0.6
492
Normal
-0.6
615
Tumor
-0.6
1016
Normal
-0.6
1014
Normal
-0.6
444
Normal
-0.6
627
Tumor
-0.6
494
Normal
-0.6
452
Normal
-0.6
944
Normal
-0.7
516
Normal
-0.7
415
Tumor
-0.7
984
Normal
-0.7
728
Normal
-0.7
113
Tumor
-0.7
484
Normal
-0.7
524
Normal
-0.7
412
Normal
-0.7
723
Tumor
-0.7
742
Normal
-0.7
884
Normal
-0.7
261
Tumor
-0.7
938
Normal
-0.7
376
Normal
-0.7
857
Tumor
-0.7
223
Tumor
-0.7
914
Normal
-0.7
866
Normal
-0.7
868
Normal
-0.7
915
Tumor
-0.7
327
Tumor
-0.8
858
Normal
-0.8
823
Tumor
-0.8
715
Tumor
-0.8
916
Normal
-0.8
816
Normal
-0.8
864
Normal
-0.8
745
Tumor
-0.8
436
Normal
-0.8
738
Normal
-0.8
641
Tumor
-0.8
1027
Tumor
-0.8
824
Normal
-0.8
867
Tumor
-0.9
926
Normal
-0.9
696
Normal
-0.9
918
Normal
-0.9
912
Normal
-0.9
744
Normal
-0.9
642
Normal
-0.9
114
Normal
-0.9
862
Normal
-0.9
863
Tumor
-0.9
955
Tumor
-0.9
818
Normal
-0.9
616
Normal
-0.9
913
Tumor
-1.0
874
Normal
-1.0
882
Normal
-1.0
852
Normal
-1.0
536
Normal
-1.0
618
Normal
-1.1
716
Normal
-1.1
1042
Normal
-1.1
922
Normal
-1.1
1032
Normal
-1.1
1025
Tumor
-1.1
1026
Normal
-1.1
721
Tumor
-1.2
617
Tumor
-1.2
1022
Normal
-1.2
636
Normal
-1.2
924
Normal
-1.2
628
Normal
-1.2
722
Normal
-1.3
878
Normal
-1.3
1041
Tumor
-1.4
1028
Normal
-1.5
714
Normal
-1.6
686
Normal
-1.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
