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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IRAK1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
43.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
235.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
203.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
146.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
144.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
116.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
111.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
111.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
110.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
107.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
106.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
102.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
98.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
97.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
97.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
96.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
96.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
92.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
91.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
91.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
89.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
88.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
88.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
87.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
85.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
84.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
83.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
83.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
83.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
82.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
82.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
82.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
81.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
80.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
80.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
80.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
79.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
79.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
78.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
78.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
78.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
77.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
77.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
76.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
76.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
76.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
76.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
76.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
74.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
73.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
73.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
73.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
73.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
72.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
72.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
72.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
71.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
71.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
71.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
70.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
69.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
69.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
68.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
66.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
66.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
66.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
66.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
64.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
64.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
64.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
64.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
62.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
62.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
62.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
61.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
61.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
61.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
60.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
60.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
60.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
59.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
59.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
59.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
59.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
57.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
57.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
57.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
57.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
56.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
56.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
55.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
55.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
55.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
54.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
54.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
53.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
53.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
53.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
53.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
53.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
53.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
52.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
52.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
51.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
51.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
51.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
51.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
50.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
50.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
50.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
49.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
49.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
49.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
49.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
49.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
48.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
48.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
48.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
48.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
48.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
47.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
47.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
47.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
46.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
46.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
46.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
45.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
45.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
44.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
44.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
44.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
44.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
44.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
43.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
43.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
43.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
43.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
43.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
43.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
42.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
42.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
42.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
42.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
42.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
41.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
41.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
41.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
41.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
41.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
41.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
40.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
40.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
40.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
40.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
40.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
40.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
40.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
40.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
40.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
39.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
39.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
39.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
39.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
39.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
39.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
38.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
38.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
37.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
37.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
37.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
37.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
37.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
37.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
37.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
36.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
36.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
36.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
36.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
36.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
35.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
35.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
35.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
35.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
35.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
35.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
35.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
35.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
35.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
34.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
34.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
34.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
34.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
34.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
34.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
33.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
33.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
33.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
33.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
33.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
33.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
33.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
33.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
32.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
32.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
32.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
32.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
32.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
32.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
32.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
32.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
32.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
32.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
32.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
31.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
31.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
31.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
31.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
30.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
30.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
30.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
30.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
30.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
30.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
30.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
30.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
30.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
30.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
30.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
30.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
29.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
29.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
29.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
29.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
29.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
29.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
29.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
29.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
29.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
28.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
28.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
28.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
28.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
28.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
28.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
28.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
28.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
28.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
28.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
28.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
28.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
28.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
27.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
27.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
27.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
27.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
27.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
27.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
26.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
26.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
26.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
26.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
26.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
26.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
26.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
25.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
25.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
25.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
25.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
25.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
24.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
24.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
24.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
24.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
24.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
24.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
24.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
24.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
24.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
23.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
23.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
23.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
23.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
23.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
23.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
22.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
22.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
22.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
22.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
22.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
22.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
21.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
21.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
21.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
21.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
21.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
21.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
21.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
21.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
21.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
21.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
21.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
21.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
21.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
21.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
20.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
20.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
20.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
20.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
20.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
20.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
20.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
20.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
20.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
19.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
19.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
19.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
19.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
19.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
19.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
19.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
19.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
18.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
18.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
17.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
17.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
17.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
16.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
16.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
16.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
16.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
16.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
15.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
15.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
15.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
15.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
15.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
15.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
15.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
15.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
14.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
14.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
14.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
14.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
13.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
13.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
12.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
12.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
12.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
11.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
11.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
10.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
10.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
10.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
10.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
9.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
9.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
9.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
9.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
9.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
9.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
8.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
7.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IRAK1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
31.7
Number of samples
231
Samples
Sample
Description
TPM
DO45299
0 years, female, NA, stage:1, alive, 1440 days
188.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
125.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
119.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
103.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
96.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
95.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
92.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
91.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
88.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
87.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
86.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
85.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
84.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
84.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
83.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
79.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
76.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
73.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
72.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
67.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
63.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
60.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
58.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
58.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
57.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
56.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
56.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
56.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
55.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
55.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
53.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
52.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
52.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
51.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
50.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
50.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
50.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
49.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
48.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
48.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
47.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
46.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
46.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
45.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
45.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
45.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
44.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
44.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
43.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
43.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
42.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
41.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
41.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
41.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
40.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
39.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
38.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
37.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
37.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
37.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
37.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
36.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
36.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
36.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
35.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
35.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
35.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
35.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
35.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
35.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
35.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
34.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
34.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
34.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
34.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
33.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
33.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
33.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
33.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
33.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
32.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
32.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
31.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
31.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
31.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
31.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
31.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
30.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
30.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
30.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
30.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
30.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
30.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
30.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
29.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
29.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
28.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
28.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
28.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
28.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
27.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
27.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
26.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
26.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
26.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
26.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
26.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
26.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
25.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
24.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
24.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
24.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
24.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
24.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
24.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
24.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
24.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
23.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
23.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
23.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
23.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
23.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
23.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
22.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
22.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
22.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
22.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
22.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
22.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
22.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
22.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
21.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
21.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
21.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
21.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
21.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
21.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
20.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
20.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
20.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
20.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
19.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
19.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
19.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
19.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
19.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
19.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
19.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
18.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
18.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
18.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
18.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
18.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
18.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
18.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
17.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
17.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
17.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
17.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
17.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
16.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
16.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
16.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
16.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
16.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
16.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
16.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
16.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
15.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
15.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
15.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
15.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
15.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
15.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
15.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
15.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
15.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
15.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
15.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
15.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
15.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
15.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
14.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
14.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
14.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
14.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
14.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
14.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
14.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
14.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
14.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
14.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
13.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
13.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
13.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
13.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
12.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
12.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
12.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
12.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
12.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
11.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
11.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
11.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
11.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
11.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
11.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
11.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
11.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
10.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
10.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
10.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
10.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
9.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
9.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
9.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
8.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
8.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
8.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
7.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
7.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
7.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
6.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
527
Tumor
1.3
923
Tumor
1.3
393
Tumor
1.2
557
Tumor
0.9
863
Tumor
0.9
627
Tumor
0.9
785
Tumor
0.9
443
Tumor
0.8
483
Tumor
0.8
137
Tumor
0.8
481
Tumor
0.7
523
Tumor
0.6
261
Tumor
0.6
425
Tumor
0.6
737
Tumor
0.6
125
Tumor
0.6
567
Tumor
0.6
883
Tumor
0.6
423
Tumor
0.6
647
Tumor
0.6
473
Tumor
0.5
327
Tumor
0.5
455
Tumor
0.5
427
Tumor
0.5
1021
Tumor
0.5
431
Tumor
0.5
713
Tumor
0.5
477
Tumor
0.5
635
Tumor
0.5
755
Tumor
0.5
445
Tumor
0.5
571
Tumor
0.5
857
Tumor
0.4
1027
Tumor
0.4
283
Tumor
0.4
413
Tumor
0.4
697
Tumor
0.4
433
Tumor
0.4
881
Tumor
0.4
213
Tumor
0.4
615
Tumor
0.4
865
Tumor
0.4
953
Tumor
0.4
211
Tumor
0.4
641
Tumor
0.4
913
Tumor
0.4
395
Tumor
0.4
231
Tumor
0.4
661
Tumor
0.3
721
Tumor
0.3
471
Tumor
0.3
873
Tumor
0.3
161
Tumor
0.3
343
Tumor
0.3
977
Tumor
0.3
515
Tumor
0.3
258
Normal
0.3
357
Tumor
0.3
123
Tumor
0.3
361
Tumor
0.2
951
Tumor
0.2
383
Tumor
0.2
487
Tumor
0.2
268
Normal
0.2
861
Tumor
0.2
311
Tumor
0.2
187
Tumor
0.2
185
Tumor
0.2
921
Tumor
0.2
384
Normal
0.2
537
Tumor
0.2
285
Tumor
0.2
411
Tumor
0.2
365
Tumor
0.2
916
Normal
0.2
1043
Tumor
0.2
491
Tumor
0.2
498
Normal
0.2
387
Tumor
0.1
665
Tumor
0.1
568
Normal
0.1
112
Tumor
0.1
394
Normal
0.1
915
Tumor
0.1
513
Tumor
0.1
925
Tumor
0.1
188
Normal
0.1
224
Normal
0.1
331
Tumor
0.1
355
Tumor
0.1
451
Tumor
0.1
484
Normal
0.1
113
Tumor
0.1
267
Tumor
0.1
573
Tumor
0.1
1025
Tumor
0.1
272
Normal
0.1
563
Tumor
0.1
376
Normal
0.1
277
Tumor
0.1
917
Tumor
0.1
367
Tumor
0.1
533
Tumor
0.1
444
Normal
0.1
815
Tumor
0.1
271
Tumor
0.1
524
Normal
0.1
368
Normal
0.1
232
Normal
0.1
428
Normal
0.1
884
Normal
0.1
396
Normal
0.1
388
Normal
0.1
386
Normal
0.1
983
Tumor
0.1
262
Normal
0.1
362
Normal
0.1
221
Tumor
0.1
724
Normal
0.1
525
Tumor
0.0
461
Tumor
0.0
424
Normal
0.0
636
Normal
0.0
488
Normal
0.0
482
Normal
0.0
257
Tumor
0.0
553
Tumor
0.0
494
Normal
0.0
818
Normal
0.0
426
Normal
0.0
912
Normal
0.0
1041
Tumor
0.0
756
Normal
0.0
432
Normal
0.0
851
Tumor
0.0
478
Normal
0.0
642
Normal
0.0
745
Tumor
0.0
1015
Tumor
0.0
435
Tumor
0.0
172
Normal
0.0
493
Tumor
0.0
414
Normal
0.0
132
Normal
0.0
671
Tumor
0.0
926
Normal
0.0
536
Normal
0.0
957
Tumor
0.0
858
Normal
0.0
328
Normal
0.0
228
Normal
0.0
447
Tumor
0.0
852
Normal
0.0
922
Normal
0.0
462
Normal
0.0
392
Normal
0.0
727
Tumor
0.0
467
Tumor
0.0
816
Normal
0.0
456
Normal
0.0
823
Tumor
0.0
465
Tumor
0.0
474
Normal
0.0
415
Tumor
0.0
786
Normal
0.0
186
Normal
0.0
422
Normal
0.0
666
Normal
0.0
943
Tumor
0.0
366
Normal
-0.1
284
Normal
-0.1
416
Normal
-0.1
978
Normal
-0.1
814
Normal
-0.1
446
Normal
-0.1
918
Normal
-0.1
466
Normal
-0.1
468
Normal
-0.1
628
Normal
-0.1
574
Normal
-0.1
434
Normal
-0.1
867
Tumor
-0.1
528
Normal
-0.1
128
Normal
-0.1
964
Normal
-0.1
777
Tumor
-0.1
558
Normal
-0.1
911
Tumor
-0.1
662
Normal
-0.1
564
Normal
-0.1
1042
Normal
-0.1
297
Tumor
-0.1
1013
Tumor
-0.1
162
Normal
-0.1
1032
Normal
-0.1
148
Normal
-0.1
952
Normal
-0.1
1031
Tumor
-0.1
114
Normal
-0.1
385
Tumor
-0.1
217
Tumor
-0.1
554
Normal
-0.1
956
Normal
-0.1
955
Tumor
-0.1
616
Normal
-0.1
127
Tumor
-0.1
882
Normal
-0.1
937
Tumor
-0.1
126
Normal
-0.1
124
Normal
-0.1
313
Tumor
-0.1
546
Normal
-0.1
1045
Tumor
-0.1
146
Normal
-0.1
223
Tumor
-0.1
192
Normal
-0.1
526
Normal
-0.1
538
Normal
-0.1
518
Normal
-0.1
514
Normal
-0.1
982
Normal
-0.1
212
Normal
-0.1
516
Normal
-0.1
944
Normal
-0.1
648
Normal
-0.1
286
Normal
-0.1
436
Normal
-0.1
363
Tumor
-0.1
617
Tumor
-0.1
824
Normal
-0.1
698
Normal
-0.1
351
Tumor
-0.1
954
Normal
-0.1
492
Normal
-0.1
817
Tumor
-0.1
391
Tumor
-0.1
497
Tumor
-0.1
141
Tumor
-0.1
353
Tumor
-0.1
778
Normal
-0.1
975
Tumor
-0.1
472
Normal
-0.2
131
Tumor
-0.2
862
Normal
-0.2
448
Normal
-0.2
358
Normal
-0.2
1044
Normal
-0.2
1016
Normal
-0.2
976
Normal
-0.2
924
Normal
-0.2
1014
Normal
-0.2
195
Tumor
-0.2
874
Normal
-0.2
145
Tumor
-0.2
517
Tumor
-0.2
618
Normal
-0.2
171
Tumor
-0.2
412
Normal
-0.2
463
Tumor
-0.2
375
Tumor
-0.2
534
Normal
-0.2
545
Tumor
-0.2
111
Normal
-0.2
1028
Normal
-0.2
452
Normal
-0.2
984
Normal
-0.2
572
Normal
-0.2
877
Tumor
-0.2
136
Normal
-0.2
672
Normal
-0.2
464
Normal
-0.2
868
Normal
-0.2
1022
Normal
-0.2
1046
Normal
-0.2
963
Tumor
-0.2
354
Normal
-0.2
147
Tumor
-0.2
364
Normal
-0.2
278
Normal
-0.2
741
Tumor
-0.2
298
Normal
-0.2
686
Normal
-0.2
138
Normal
-0.2
421
Tumor
-0.3
813
Tumor
-0.3
663
Tumor
-0.3
714
Normal
-0.3
938
Normal
-0.3
332
Normal
-0.3
1026
Normal
-0.3
191
Tumor
-0.3
142
Normal
-0.3
696
Normal
-0.3
728
Normal
-0.3
685
Tumor
-0.3
958
Normal
-0.3
342
Normal
-0.3
314
Normal
-0.3
878
Normal
-0.3
218
Normal
-0.3
738
Normal
-0.3
664
Normal
-0.3
716
Normal
-0.3
968
Normal
-0.3
746
Normal
-0.3
535
Tumor
-0.3
214
Normal
-0.3
312
Normal
-0.3
866
Normal
-0.3
356
Normal
-0.3
966
Normal
-0.3
695
Tumor
-0.3
864
Normal
-0.3
981
Tumor
-0.3
341
Tumor
-0.4
744
Normal
-0.4
967
Tumor
-0.4
135
Tumor
-0.4
344
Normal
-0.4
196
Normal
-0.4
743
Tumor
-0.4
914
Normal
-0.4
227
Tumor
-0.4
222
Normal
-0.4
352
Normal
-0.4
723
Tumor
-0.4
715
Tumor
-0.4
722
Normal
-0.4
742
Normal
-0.5
965
Tumor
-0.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
