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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TMPRSS2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
80.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
59.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
53.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
53.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
37.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
37.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
35.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
35.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
34.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
34.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
33.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
32.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
30.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
30.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
29.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
29.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
28.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
28.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
28.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
27.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
26.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
26.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
26.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
25.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
25.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
24.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
24.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
24.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
24.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
24.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
24.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
23.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
23.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
23.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
23.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
22.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
22.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
22.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
22.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
21.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
21.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
21.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
21.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
21.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
21.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
21.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
20.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
20.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
20.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
19.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
19.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
19.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
19.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
19.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
19.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
19.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
19.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
18.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
18.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
18.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
18.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
18.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
17.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
17.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
17.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
17.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
17.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
17.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
17.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
17.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
17.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
16.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
16.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
16.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
16.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
16.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
16.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
16.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
16.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
16.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
15.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
15.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
15.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
15.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
15.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
15.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
15.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
15.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
15.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
15.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
15.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
14.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
14.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
14.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
14.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
14.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
14.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
14.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
14.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
14.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
14.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
14.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
14.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
14.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
13.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
13.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
13.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
13.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
13.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
13.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
13.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
13.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
13.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
13.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
13.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
13.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
12.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
12.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
12.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
12.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
12.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
12.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
12.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
12.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
12.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
12.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
12.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
12.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
12.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
12.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
12.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
11.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
11.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
11.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
11.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
11.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
11.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
11.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
11.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
11.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
11.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
11.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
11.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
11.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
11.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
11.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
11.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
11.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
10.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
10.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
10.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
10.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
10.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
10.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
10.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
10.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
10.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
10.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
10.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
10.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
10.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
10.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
10.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
10.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
10.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
10.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
10.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
10.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
10.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
10.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
9.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
9.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
9.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
9.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
9.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
9.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
9.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
9.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
9.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
9.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
9.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
9.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
9.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
9.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
9.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
8.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
8.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
8.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
8.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
8.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
8.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
8.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
8.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
8.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
8.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
8.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
8.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
8.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
8.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
8.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
7.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
7.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
7.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
7.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
7.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
7.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
7.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
7.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
7.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
7.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
7.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
7.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
7.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
7.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
6.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
6.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
6.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
6.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
6.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
6.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
6.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
6.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
6.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
6.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
6.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
6.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
6.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
6.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
6.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
6.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
5.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
5.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
5.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
5.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
5.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
5.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
5.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
5.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
5.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
5.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
5.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
5.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
5.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
5.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
5.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
4.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
4.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
4.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
4.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
4.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
4.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
4.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
4.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
4.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
4.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
3.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
3.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
3.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
3.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
3.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
2.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
2.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
2.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
2.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
2.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
2.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
2.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
1.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
1.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
1.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
1.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
1.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
1.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
1.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TMPRSS2 is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.0
Number of samples
231
Samples
Sample
Description
TPM
DO45279
0 years, male, NA, stage:3, alive, 1290 days
117.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
81.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
71.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
64.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
58.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
42.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
41.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
40.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
38.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
37.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
34.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
31.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
30.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
30.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
30.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
28.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
28.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
27.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
26.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
25.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
25.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
24.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
24.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
23.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
23.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
22.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
21.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
21.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
21.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
20.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
20.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
20.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
19.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
19.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
19.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
19.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
19.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
19.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
18.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
18.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
18.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
18.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
17.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
17.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
17.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
17.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
17.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
16.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
16.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
16.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
16.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
15.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
15.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
15.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
15.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
15.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
15.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
15.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
15.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
15.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
14.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
14.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
14.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
14.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
14.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
14.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
14.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
13.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
13.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
13.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
13.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
12.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
12.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
12.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
12.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
12.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
12.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
12.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
11.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
11.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
11.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
11.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
11.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
11.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
11.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
11.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
11.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
11.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
11.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
11.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
11.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
11.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
11.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
10.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
10.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
10.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
10.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
10.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
10.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
10.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
10.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
10.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
10.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
9.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
9.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
9.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
9.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
9.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
8.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
8.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
8.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
8.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
8.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
8.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
8.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
8.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
7.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
7.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
7.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
7.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
7.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
7.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
7.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
7.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
7.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
7.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
7.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
7.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
7.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
7.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
7.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
7.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
6.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
6.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
6.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
6.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
6.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
6.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
6.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
6.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
6.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
6.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
6.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
6.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
6.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
5.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
5.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
5.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
5.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
5.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
5.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
5.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
5.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
5.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
5.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
4.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
4.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
4.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
4.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
4.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
4.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
4.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
4.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
4.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
4.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
4.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
4.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
4.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
3.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
3.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
3.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
3.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
3.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
3.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
3.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
3.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
3.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
3.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
3.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
3.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
3.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
3.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
3.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
3.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
3.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
3.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
3.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
2.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
2.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
2.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
2.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
2.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
2.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
2.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
2.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
2.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
2.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
1.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
1.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
1.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
1.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
1.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
1.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
1.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
1.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
1.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
0.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
0.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
0.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
0.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
0.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
221
Tumor
1.6
553
Tumor
1.2
425
Tumor
1.2
471
Tumor
1.1
328
Normal
1.1
863
Tumor
1.0
545
Tumor
1.0
515
Tumor
0.9
1021
Tumor
0.9
921
Tumor
0.9
327
Tumor
0.9
568
Normal
0.8
564
Normal
0.8
452
Normal
0.8
131
Tumor
0.7
574
Normal
0.7
368
Normal
0.7
937
Tumor
0.7
523
Tumor
0.7
538
Normal
0.7
1031
Tumor
0.7
172
Normal
0.7
572
Normal
0.6
464
Normal
0.6
881
Tumor
0.6
395
Tumor
0.6
874
Normal
0.6
271
Tumor
0.6
456
Normal
0.6
513
Tumor
0.5
311
Tumor
0.5
744
Normal
0.5
412
Normal
0.5
571
Tumor
0.5
1045
Tumor
0.5
777
Tumor
0.5
913
Tumor
0.5
186
Normal
0.5
968
Normal
0.5
527
Tumor
0.5
393
Tumor
0.5
666
Normal
0.5
162
Normal
0.5
191
Tumor
0.5
648
Normal
0.5
911
Tumor
0.5
376
Normal
0.5
558
Normal
0.4
857
Tumor
0.4
461
Tumor
0.4
124
Normal
0.4
862
Normal
0.4
364
Normal
0.4
356
Normal
0.4
465
Tumor
0.4
958
Normal
0.4
277
Tumor
0.4
148
Normal
0.4
742
Normal
0.4
466
Normal
0.4
546
Normal
0.4
671
Tumor
0.4
664
Normal
0.4
823
Tumor
0.4
195
Tumor
0.3
723
Tumor
0.3
384
Normal
0.3
284
Normal
0.3
111
Normal
0.3
416
Normal
0.3
436
Normal
0.3
185
Tumor
0.3
1016
Normal
0.3
278
Normal
0.3
755
Tumor
0.3
366
Normal
0.3
224
Normal
0.3
563
Tumor
0.3
286
Normal
0.3
392
Normal
0.3
738
Normal
0.3
868
Normal
0.3
414
Normal
0.3
422
Normal
0.3
982
Normal
0.3
976
Normal
0.3
877
Tumor
0.3
223
Tumor
0.3
468
Normal
0.3
188
Normal
0.3
481
Tumor
0.2
672
Normal
0.2
314
Normal
0.2
426
Normal
0.2
137
Tumor
0.2
884
Normal
0.2
421
Tumor
0.2
954
Normal
0.2
331
Tumor
0.2
448
Normal
0.2
864
Normal
0.2
297
Tumor
0.2
428
Normal
0.2
914
Normal
0.2
912
Normal
0.2
534
Normal
0.2
883
Tumor
0.2
362
Normal
0.2
713
Tumor
0.2
554
Normal
0.2
866
Normal
0.2
818
Normal
0.2
816
Normal
0.2
1025
Tumor
0.2
662
Normal
0.2
873
Tumor
0.2
923
Tumor
0.2
978
Normal
0.2
785
Tumor
0.2
213
Tumor
0.2
231
Tumor
0.2
434
Normal
0.2
964
Normal
0.1
557
Tumor
0.1
1014
Normal
0.1
966
Normal
0.1
228
Normal
0.1
817
Tumor
0.1
882
Normal
0.1
432
Normal
0.1
915
Tumor
0.1
128
Normal
0.1
386
Normal
0.1
665
Tumor
0.1
924
Normal
0.1
728
Normal
0.1
813
Tumor
0.1
916
Normal
0.1
698
Normal
0.1
126
Normal
0.1
268
Normal
0.1
477
Tumor
0.1
984
Normal
0.1
956
Normal
0.1
114
Normal
0.1
878
Normal
0.1
217
Tumor
0.1
663
Tumor
0.1
745
Tumor
0.1
516
Normal
0.1
981
Tumor
0.1
917
Tumor
0.1
411
Tumor
0.1
424
Normal
0.0
944
Normal
0.0
955
Tumor
0.0
716
Normal
0.0
262
Normal
0.0
737
Tumor
0.0
391
Tumor
0.0
232
Normal
0.0
867
Tumor
0.0
312
Normal
0.0
298
Normal
0.0
261
Tumor
0.0
478
Normal
0.0
746
Normal
0.0
852
Normal
0.0
171
Tumor
0.0
528
Normal
0.0
332
Normal
0.0
518
Normal
0.0
446
Normal
0.0
514
Normal
0.0
533
Tumor
0.0
142
Normal
0.0
525
Tumor
0.0
272
Normal
0.0
925
Tumor
0.0
824
Normal
0.0
161
Tumor
0.0
952
Normal
0.0
1046
Normal
0.0
212
Normal
0.0
714
Normal
0.0
396
Normal
0.0
938
Normal
0.0
524
Normal
0.0
136
Normal
-0.1
444
Normal
-0.1
423
Tumor
-0.1
365
Tumor
-0.1
696
Normal
-0.1
467
Tumor
-0.1
355
Tumor
-0.1
388
Normal
-0.1
138
Normal
-0.1
1042
Normal
-0.1
146
Normal
-0.1
778
Normal
-0.1
394
Normal
-0.1
258
Normal
-0.1
113
Tumor
-0.1
1015
Tumor
-0.1
187
Tumor
-0.1
526
Normal
-0.1
858
Normal
-0.1
462
Normal
-0.1
814
Normal
-0.1
1041
Tumor
-0.1
145
Tumor
-0.1
951
Tumor
-0.1
141
Tumor
-0.1
455
Tumor
-0.1
383
Tumor
-0.1
943
Tumor
-0.1
474
Normal
-0.1
472
Normal
-0.1
385
Tumor
-0.1
786
Normal
-0.2
482
Normal
-0.2
1044
Normal
-0.2
127
Tumor
-0.2
861
Tumor
-0.2
918
Normal
-0.2
647
Tumor
-0.2
132
Normal
-0.2
536
Normal
-0.2
147
Tumor
-0.2
445
Tumor
-0.2
977
Tumor
-0.2
953
Tumor
-0.2
313
Tumor
-0.2
851
Tumor
-0.2
743
Tumor
-0.2
567
Tumor
-0.2
1027
Tumor
-0.2
722
Normal
-0.3
433
Tumor
-0.3
363
Tumor
-0.3
1043
Tumor
-0.3
361
Tumor
-0.3
112
Tumor
-0.3
267
Tumor
-0.3
415
Tumor
-0.3
1028
Normal
-0.3
715
Tumor
-0.3
756
Normal
-0.3
451
Tumor
-0.3
721
Tumor
-0.3
135
Tumor
-0.3
387
Tumor
-0.3
686
Normal
-0.3
285
Tumor
-0.3
218
Normal
-0.3
727
Tumor
-0.3
214
Normal
-0.4
463
Tumor
-0.4
922
Normal
-0.4
517
Tumor
-0.4
537
Tumor
-0.4
375
Tumor
-0.4
257
Tumor
-0.4
975
Tumor
-0.4
685
Tumor
-0.4
435
Tumor
-0.4
447
Tumor
-0.4
196
Normal
-0.4
283
Tumor
-0.4
741
Tumor
-0.5
192
Normal
-0.5
963
Tumor
-0.6
367
Tumor
-0.6
473
Tumor
-0.6
1032
Normal
-0.6
427
Tumor
-0.6
1026
Normal
-0.6
123
Tumor
-0.6
125
Tumor
-0.7
222
Normal
-0.7
695
Tumor
-0.7
443
Tumor
-0.7
724
Normal
-0.7
926
Normal
-0.7
661
Tumor
-0.7
965
Tumor
-0.7
815
Tumor
-0.7
697
Tumor
-0.7
1022
Normal
-0.8
573
Tumor
-0.8
227
Tumor
-0.8
967
Tumor
-0.8
1013
Tumor
-0.9
413
Tumor
-0.9
431
Tumor
-0.9
211
Tumor
-1.0
957
Tumor
-1.0
983
Tumor
-1.2
865
Tumor
-1.3
535
Tumor
-1.6
351
Tumor
N/A
352
Normal
N/A
353
Tumor
N/A
354
Normal
N/A
357
Tumor
N/A
358
Normal
N/A
483
Tumor
N/A
484
Normal
N/A
487
Tumor
N/A
488
Normal
N/A
491
Tumor
N/A
492
Normal
N/A
493
Tumor
N/A
494
Normal
N/A
497
Tumor
N/A
498
Normal
N/A
615
Tumor
N/A
616
Normal
N/A
617
Tumor
N/A
618
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
635
Tumor
N/A
636
Normal
N/A
641
Tumor
N/A
642
Normal
N/A
341
Tumor
N/A
342
Normal
N/A
343
Tumor
N/A
344
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
