We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PTP4A2 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
49.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
194.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
181.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
161.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
158.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
157.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
150.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
146.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
138.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
135.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
133.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
131.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
129.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
119.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
117.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
114.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
113.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
113.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
112.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
112.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
110.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
105.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
105.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
102.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
101.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
100.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
99.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
99.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
98.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
97.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
96.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
96.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
94.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
91.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
90.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
88.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
87.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
86.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
85.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
85.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
85.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
83.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
83.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
80.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
77.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
76.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
75.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
75.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
74.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
74.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
74.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
74.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
73.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
73.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
73.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
72.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
72.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
70.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
70.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
70.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
69.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
67.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
67.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
66.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
66.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
65.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
65.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
65.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
64.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
64.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
64.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
64.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
63.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
62.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
62.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
62.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
61.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
61.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
61.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
60.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
60.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
59.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
59.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
59.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
58.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
58.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
58.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
57.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
57.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
57.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
56.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
56.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
56.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
56.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
56.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
55.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
55.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
55.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
55.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
54.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
54.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
54.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
54.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
54.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
54.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
53.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
53.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
53.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
53.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
53.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
53.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
53.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
53.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
53.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
52.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
52.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
52.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
51.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
51.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
51.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
51.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
51.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
51.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
51.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
50.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
50.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
50.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
50.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
50.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
50.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
50.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
49.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
49.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
49.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
49.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
49.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
49.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
49.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
49.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
48.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
48.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
48.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
48.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
48.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
48.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
47.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
47.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
47.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
47.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
47.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
47.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
47.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
47.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
47.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
47.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
46.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
46.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
46.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
46.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
46.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
45.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
45.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
45.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
45.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
44.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
44.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
44.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
43.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
43.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
43.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
43.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
43.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
42.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
42.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
42.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
42.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
41.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
41.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
41.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
41.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
41.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
41.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
41.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
41.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
41.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
41.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
41.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
40.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
40.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
40.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
40.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
40.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
40.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
40.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
39.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
39.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
39.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
39.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
39.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
39.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
39.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
39.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
39.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
38.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
38.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
38.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
38.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
38.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
38.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
38.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
37.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
37.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
37.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
37.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
37.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
37.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
37.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
37.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
37.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
37.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
37.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
37.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
36.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
36.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
36.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
36.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
36.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
36.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
35.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
35.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
35.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
35.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
35.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
35.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
34.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
34.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
34.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
34.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
34.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
34.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
34.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
33.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
33.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
33.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
33.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
33.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
33.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
33.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
33.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
33.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
33.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
33.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
33.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
33.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
32.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
32.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
32.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
32.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
32.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
32.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
32.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
32.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
32.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
32.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
31.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
31.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
31.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
31.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
31.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
31.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
31.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
30.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
30.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
30.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
30.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
30.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
30.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
30.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
30.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
29.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
29.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
29.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
29.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
29.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
29.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
29.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
29.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
29.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
28.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
28.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
28.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
28.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
28.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
28.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
28.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
28.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
28.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
28.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
27.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
27.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
27.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
27.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
27.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
27.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
27.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
27.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
27.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
27.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
27.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
27.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
26.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
26.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
26.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
26.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
26.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
26.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
26.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
25.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
25.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
25.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
25.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
25.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
25.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
25.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
25.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
25.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
25.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
25.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
24.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
24.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
24.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
24.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
24.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
23.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
23.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
23.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
22.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
22.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
22.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
22.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
22.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
21.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
21.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
21.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
20.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
20.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
20.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
19.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
19.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
19.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
19.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
18.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
18.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
18.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
17.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
17.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
17.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
17.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
16.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
15.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
15.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
14.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PTP4A2 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
36.9
Number of samples
231
Samples
Sample
Description
TPM
DO45145
0 years, male, NA, stage:3, dead, 60 days
176.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
109.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
98.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
95.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
90.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
84.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
80.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
80.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
80.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
76.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
71.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
70.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
70.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
70.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
68.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
68.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
67.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
64.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
64.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
61.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
59.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
58.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
58.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
57.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
56.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
56.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
54.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
54.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
53.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
53.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
53.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
53.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
52.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
52.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
51.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
51.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
51.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
51.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
51.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
49.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
49.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
48.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
48.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
48.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
48.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
47.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
47.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
47.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
47.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
46.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
46.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
46.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
45.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
44.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
44.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
44.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
44.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
44.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
44.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
44.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
44.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
43.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
43.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
43.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
42.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
42.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
42.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
42.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
41.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
41.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
41.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
41.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
40.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
39.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
39.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
39.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
39.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
38.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
38.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
38.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
38.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
38.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
37.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
37.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
37.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
37.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
37.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
36.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
36.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
36.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
36.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
36.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
36.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
35.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
35.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
35.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
35.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
35.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
34.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
34.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
34.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
34.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
34.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
33.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
33.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
33.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
33.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
33.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
33.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
33.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
33.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
33.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
32.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
32.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
32.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
32.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
32.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
32.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
31.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
31.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
31.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
31.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
31.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
31.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
31.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
31.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
31.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
30.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
30.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
30.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
30.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
30.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
30.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
30.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
30.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
30.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
30.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
30.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
29.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
29.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
29.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
29.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
29.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
29.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
29.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
28.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
28.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
28.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
28.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
28.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
28.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
27.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
27.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
27.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
27.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
27.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
27.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
26.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
26.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
26.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
26.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
26.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
26.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
26.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
26.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
26.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
26.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
26.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
26.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
25.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
25.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
25.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
25.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
25.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
25.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
24.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
24.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
24.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
24.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
23.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
23.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
23.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
23.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
23.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
23.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
22.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
22.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
22.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
22.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
22.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
22.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
22.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
22.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
21.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
21.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
21.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
21.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
21.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
20.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
20.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
20.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
20.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
20.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
20.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
20.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
20.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
20.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
19.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
19.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
18.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
18.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
18.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
18.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
18.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
17.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
17.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
17.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
17.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
17.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
17.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
16.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
16.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
16.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
16.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
15.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
14.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
14.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
13.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
12.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
11.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
10.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
745
Tumor
0.5
567
Tumor
0.5
964
Normal
0.5
363
Tumor
0.4
285
Tumor
0.4
147
Tumor
0.4
571
Tumor
0.4
171
Tumor
0.4
1027
Tumor
0.4
135
Tumor
0.4
463
Tumor
0.3
958
Normal
0.3
125
Tumor
0.3
943
Tumor
0.3
944
Normal
0.3
978
Normal
0.3
525
Tumor
0.3
617
Tumor
0.3
513
Tumor
0.3
467
Tumor
0.3
727
Tumor
0.3
695
Tumor
0.3
161
Tumor
0.3
393
Tumor
0.3
857
Tumor
0.3
966
Normal
0.3
671
Tumor
0.3
132
Normal
0.3
258
Normal
0.3
954
Normal
0.3
878
Normal
0.3
222
Normal
0.3
196
Normal
0.3
976
Normal
0.3
1043
Tumor
0.3
267
Tumor
0.3
661
Tumor
0.3
112
Tumor
0.3
272
Normal
0.3
111
Normal
0.3
737
Tumor
0.3
185
Tumor
0.2
642
Normal
0.2
218
Normal
0.2
851
Tumor
0.2
452
Normal
0.2
517
Tumor
0.2
882
Normal
0.2
938
Normal
0.2
968
Normal
0.2
356
Normal
0.2
128
Normal
0.2
423
Tumor
0.2
648
Normal
0.2
564
Normal
0.2
616
Normal
0.2
866
Normal
0.2
351
Tumor
0.2
662
Normal
0.2
344
Normal
0.2
361
Tumor
0.2
615
Tumor
0.2
925
Tumor
0.2
445
Tumor
0.2
123
Tumor
0.2
636
Normal
0.2
618
Normal
0.2
434
Normal
0.2
146
Normal
0.2
1014
Normal
0.2
395
Tumor
0.2
468
Normal
0.2
951
Tumor
0.2
277
Tumor
0.2
574
Normal
0.2
114
Normal
0.2
1021
Tumor
0.2
424
Normal
0.2
214
Normal
0.2
813
Tumor
0.2
664
Normal
0.2
572
Normal
0.2
824
Normal
0.2
358
Normal
0.2
465
Tumor
0.2
314
Normal
0.1
341
Tumor
0.1
141
Tumor
0.1
376
Normal
0.1
981
Tumor
0.1
435
Tumor
0.1
357
Tumor
0.1
413
Tumor
0.1
124
Normal
0.1
666
Normal
0.1
433
Tumor
0.1
874
Normal
0.1
568
Normal
0.1
412
Normal
0.1
922
Normal
0.1
926
Normal
0.1
573
Tumor
0.1
672
Normal
0.1
451
Tumor
0.1
444
Normal
0.1
228
Normal
0.1
384
Normal
0.1
1025
Tumor
0.1
462
Normal
0.1
311
Tumor
0.1
187
Tumor
0.1
364
Normal
0.1
432
Normal
0.1
422
Normal
0.1
713
Tumor
0.1
952
Normal
0.1
685
Tumor
0.1
471
Tumor
0.1
818
Normal
0.1
858
Normal
0.1
867
Tumor
0.1
428
Normal
0.1
224
Normal
0.1
343
Tumor
0.1
955
Tumor
0.1
232
Normal
0.1
663
Tumor
0.1
924
Normal
0.1
286
Normal
0.1
352
Normal
0.1
456
Normal
0.1
917
Tumor
0.1
327
Tumor
0.1
136
Normal
0.1
956
Normal
0.1
982
Normal
0.1
354
Normal
0.1
1016
Normal
0.1
332
Normal
0.1
142
Normal
0.1
257
Tumor
0.1
861
Tumor
0.1
426
Normal
0.1
212
Normal
0.1
852
Normal
0.1
443
Tumor
0.1
466
Normal
0.1
195
Tumor
0.1
914
Normal
0.1
557
Tumor
0.1
446
Normal
0.1
965
Tumor
0.1
138
Normal
0.1
724
Normal
0.1
298
Normal
0.1
268
Normal
0.1
686
Normal
0.1
284
Normal
0.1
385
Tumor
0.1
528
Normal
0.1
514
Normal
0.1
484
Normal
0.1
416
Normal
0.1
817
Tumor
0.1
923
Tumor
0.1
328
Normal
0.1
558
Normal
0.0
744
Normal
0.0
231
Tumor
0.0
647
Tumor
0.0
342
Normal
0.0
448
Normal
0.0
1026
Normal
0.0
786
Normal
0.0
698
Normal
0.0
884
Normal
0.0
375
Tumor
0.0
746
Normal
0.0
628
Normal
0.0
627
Tumor
0.0
1022
Normal
0.0
515
Tumor
0.0
756
Normal
0.0
883
Tumor
0.0
777
Tumor
0.0
472
Normal
0.0
414
Normal
0.0
742
Normal
0.0
331
Tumor
0.0
912
Normal
0.0
368
Normal
0.0
526
Normal
0.0
563
Tumor
0.0
728
Normal
0.0
953
Tumor
0.0
696
Normal
0.0
436
Normal
0.0
984
Normal
0.0
353
Tumor
0.0
474
Normal
0.0
916
Normal
0.0
865
Tumor
0.0
723
Tumor
0.0
738
Normal
0.0
524
Normal
0.0
1044
Normal
0.0
278
Normal
0.0
915
Tumor
0.0
186
Normal
0.0
217
Tumor
0.0
816
Normal
0.0
741
Tumor
0.0
192
Normal
0.0
533
Tumor
0.0
518
Normal
0.0
755
Tumor
0.0
714
Normal
0.0
262
Normal
0.0
778
Normal
0.0
271
Tumor
0.0
483
Tumor
0.0
864
Normal
0.0
148
Normal
0.0
918
Normal
0.0
127
Tumor
0.0
546
Normal
0.0
367
Tumor
0.0
721
Tumor
0.0
536
Normal
0.0
1032
Normal
0.0
977
Tumor
0.0
868
Normal
0.0
1046
Normal
0.0
261
Tumor
0.0
538
Normal
0.0
145
Tumor
0.0
162
Normal
0.0
1028
Normal
0.0
1031
Tumor
0.0
877
Tumor
0.0
113
Tumor
0.0
131
Tumor
-0.1
722
Normal
-0.1
477
Tumor
-0.1
863
Tumor
-0.1
553
Tumor
-0.1
427
Tumor
-0.1
425
Tumor
-0.1
362
Normal
-0.1
823
Tumor
-0.1
464
Normal
-0.1
554
Normal
-0.1
313
Tumor
-0.1
223
Tumor
-0.1
1015
Tumor
-0.1
983
Tumor
-0.1
482
Normal
-0.1
911
Tumor
-0.1
387
Tumor
-0.1
137
Tumor
-0.1
635
Tumor
-0.1
1013
Tumor
-0.1
937
Tumor
-0.1
665
Tumor
-0.1
227
Tumor
-0.1
516
Normal
-0.1
498
Normal
-0.1
213
Tumor
-0.1
355
Tumor
-0.1
1045
Tumor
-0.1
523
Tumor
-0.1
862
Normal
-0.1
535
Tumor
-0.1
814
Normal
-0.1
488
Normal
-0.1
534
Normal
-0.1
481
Tumor
-0.1
487
Tumor
-0.1
815
Tumor
-0.1
461
Tumor
-0.1
415
Tumor
-0.1
1042
Normal
-0.1
283
Tumor
-0.1
716
Normal
-0.1
697
Tumor
-0.1
1041
Tumor
-0.1
383
Tumor
-0.1
455
Tumor
-0.1
641
Tumor
-0.1
172
Normal
-0.1
963
Tumor
-0.2
447
Tumor
-0.2
957
Tumor
-0.2
221
Tumor
-0.2
126
Normal
-0.2
494
Normal
-0.2
365
Tumor
-0.2
715
Tumor
-0.2
785
Tumor
-0.2
392
Normal
-0.2
411
Tumor
-0.2
297
Tumor
-0.2
394
Normal
-0.2
312
Normal
-0.2
497
Tumor
-0.2
396
Normal
-0.2
431
Tumor
-0.2
492
Normal
-0.2
421
Tumor
-0.2
881
Tumor
-0.2
545
Tumor
-0.3
366
Normal
-0.3
493
Tumor
-0.3
873
Tumor
-0.3
491
Tumor
-0.3
386
Normal
-0.3
921
Tumor
-0.3
478
Normal
-0.3
191
Tumor
-0.3
388
Normal
-0.3
391
Tumor
-0.3
188
Normal
-0.3
913
Tumor
-0.3
975
Tumor
-0.4
473
Tumor
-0.4
967
Tumor
-0.4
527
Tumor
-0.4
743
Tumor
-0.5
537
Tumor
-0.6
211
Tumor
-0.6
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
