MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:3.3 nTPM
HPA Brain:27.7 nTPM
GTEx:3.3 nTPM
FANTOM5:0.0 Scaled Tags Per Million
Pig:8.8 nTPM
Mouse:18.8 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 27.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 13.1
2586 Male, age 75, left hemisphere 33.4
2828 Female, age 72, unknown 19.1
1827 Male, age 72, unknown 18.5
1870 Female, age 42, unknown 12.0
2219 Male, age 76, both hemispheres 10.1
1833 Male, age 53, unknown 9.4
2666 Male, age 74, left hemisphere 8.9
2411 Female, age 72, unknown 7.5
1830 Male, age 51, unknown 7.3
2019 Male, age 18, unknown 4.7
Dorsal raphe nucleus
nTPM: 9.0
2016 Female, age 72, unknown 11.1
2298 Female, age 72, unknown 10.4
1828 Male, age 53, unknown 10.1
2047 Male, age 72, unknown 6.7
2750 Male, age 76, both hemispheres 6.5
Inferior colliculus
nTPM: 10.1
1848 Female, age 42, unknown 14.0
2849 Male, age 72, unknown 10.6
2097 Female, age 72, unknown 8.8
1890 Male, age 53, unknown 6.8
Median raphe nucleus
nTPM: 9.9
2220 Male, age 76, midline 9.9
Periaquaductal grey, anterior
nTPM: 16.7
2502 Female, age 75, unknown 20.1
1795 Male, age 51, unknown 17.2
1947 Male, age 18, unknown 12.8
Periaquaductal grey, dorsal
nTPM: 27.7
1831 Male, age 72, unknown 62.8
1840 Male, age 53, unknown 24.9
2850 Male, age 76, both hemispheres 12.4
2464 Female, age 72, unknown 10.7
Periaquaductal grey, lateral
nTPM: 14.4
2053 Male, age 18, unknown 19.1
2140 Male, age 76, both hemispheres 12.8
2272 Male, age 74, both hemispheres 11.3
Pretectal area
nTPM: 12.5
2273 Male, age 74, both hemispheres 17.7
2407 Male, age 75, both hemispheres 17.3
2825 Male, age 18, unknown 15.6
1816 Male, age 51, unknown 14.3
2224 Female, age 72, unknown 13.0
2667 Female, age 75, unknown 12.6
2316 Male, age 76, right hemisphere 12.4
1815 Male, age 53, unknown 11.7
1944 Female, age 72, unknown 11.4
2007 Male, age 72, unknown 8.1
1817 Female, age 42, unknown 3.8
Red nucleus
nTPM: 4.5
2584 Male, age 75, left hemisphere 16.3
2725 Female, age 75, unknown 10.5
2785 Male, age 18, unknown 4.7
2503 Female, age 72, unknown 3.3
2227 Male, age 72, unknown 3.0
2769 Male, age 72, unknown 2.8
2823 Male, age 76, right hemisphere 2.8
1904 Male, age 53, unknown 2.6
1821 Female, age 72, unknown 2.3
1954 Female, age 42, unknown 2.1
1865 Male, age 51, unknown 2.0
2588 Male, age 74, left hemisphere 1.8
Substantia nigra
nTPM: 22.6
1916 Female, age 42, unknown 55.4
2409 Female, age 72, unknown 29.0
2241 Male, age 72, unknown 28.6
1851 Male, age 51, unknown 27.8
2665 Male, age 74, both hemispheres 20.5
1941 Male, age 53, unknown 18.6
2699 Male, age 18, unknown 16.7
2583 Male, age 75, right hemisphere 11.9
1889 Female, age 72, unknown 9.6
2590 Female, age 75, unknown 7.4
Superior colliculus
nTPM: 13.3
2664 Male, age 75, both hemispheres 27.0
1796 Male, age 53, unknown 25.0
2261 Male, age 18, unknown 17.2
1839 Male, age 51, unknown 13.1
2587 Male, age 74, left hemisphere 13.0
2087 Female, age 72, unknown 10.6
1895 Male, age 76, right hemisphere 8.5
2668 Female, age 75, unknown 8.4
1913 Female, age 42, unknown 6.2
1995 Male, age 72, unknown 3.4
Ventral tegmental area
nTPM: 17.6
1915 Female, age 42, unknown 28.5
2410 Female, age 72, unknown 23.5
1942 Male, age 51, unknown 17.8
2218 Male, age 76, both hemispheres 17.4
2021 Male, age 53, unknown 12.5
2223 Female, age 72, unknown 6.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 3.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 3.3
Samples: 139

Max nTPM: 19.1
Min nTPM: 0.0
Std nTPM: 3.2
Median nTPM: 2.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 19.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 18.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 13.7
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 10.6
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 10.4
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 9.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 8.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 7.9
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 7.9
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 7.7
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 7.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 0.0
FF:10158-103A5 76 years, female 0.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 8.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 7.0
Samples: 4

Max nTPM: 11.5
Min nTPM: 1.8
Sample A Female 11.5
Sample B Female 4.6
Sample C Male 10.2
Sample D Male 1.8
Midbrain
nTPM: 8.8
Samples: 4

Max nTPM: 19.1
Min nTPM: 3.6
Sample A Female 7.1
Sample B Female 3.6
Sample C Male 19.1
Sample D Male 5.4
Periaqueductal gray
nTPM: 3.7
Samples: 3

Max nTPM: 4.3
Min nTPM: 3.1
Sample B Female 3.1
Sample C Male 4.3
Sample D Male 3.8
Superior colliculi
nTPM: 5.5
Samples: 4

Max nTPM: 8.4
Min nTPM: 3.9
Sample A Female 4.6
Sample B Female 3.9
Sample C Male 8.4
Sample D Male 5.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 18.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 18.8
Samples: 4

Max nTPM: 21.2
Min nTPM: 16.2
Sample A Male 16.2
Sample B Male 19.9
Sample C Female 21.2
Sample D Female 17.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
71832818 Antisense, RP_051005_03_G03, Mouse strain C57BL/6J (56 days, male) 0.7
73931406 Antisense, RP_051005_03_G03, Mouse strain C57BL/6J (56 days, male) 0.1

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