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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HMCES is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
28.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
72.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
64.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
64.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
63.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
58.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
57.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
57.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
57.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
54.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
54.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
54.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
54.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
53.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
52.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
52.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
51.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
51.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
51.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
50.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
50.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
49.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
48.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
48.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
48.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
47.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
47.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
47.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
47.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
46.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
46.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
45.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
45.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
45.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
45.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
44.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
44.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
43.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
43.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
42.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
42.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
42.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
41.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
41.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
41.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
41.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
41.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
41.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
41.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
41.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
41.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
41.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
40.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
40.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
40.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
40.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
39.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
39.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
38.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
38.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
38.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
38.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
38.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
38.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
37.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
36.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
36.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
36.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
36.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
36.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
35.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
35.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
35.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
35.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
35.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
35.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
35.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
35.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
34.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
34.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
34.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
34.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
34.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
34.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
34.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
33.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
33.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
33.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
33.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
33.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
33.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
33.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
33.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
33.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
33.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
32.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
32.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
32.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
32.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
32.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
32.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
32.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
32.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
31.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
31.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
31.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
31.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
31.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
31.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
31.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
31.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
31.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
31.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
31.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
31.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
31.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
31.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
31.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
30.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
30.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
30.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
30.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
30.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
30.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
30.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
30.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
30.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
30.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
30.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
30.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
30.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
30.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
29.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
29.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
29.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
29.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
29.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
29.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
29.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
29.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
28.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
28.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
28.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
28.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
28.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
28.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
28.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
27.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
27.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
27.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
27.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
27.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
27.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
27.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
27.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
27.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
27.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
27.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
27.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
27.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
27.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
26.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
26.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
26.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
26.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
26.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
26.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
26.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
26.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
26.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
26.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
26.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
26.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
26.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
25.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
25.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
25.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
25.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
25.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
25.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
25.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
25.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
25.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
25.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
25.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
25.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
25.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
25.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
25.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
25.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
25.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
25.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
25.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
25.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
25.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
25.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
24.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
24.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
24.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
24.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
24.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
24.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
24.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
24.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
24.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
24.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
24.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
24.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
23.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
23.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
23.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
23.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
23.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
23.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
23.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
23.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
23.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
23.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
23.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
23.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
23.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
23.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
23.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
23.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
23.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
23.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
23.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
23.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
23.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
23.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
23.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
23.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
23.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
23.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
23.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
23.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
22.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
22.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
22.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
22.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
22.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
22.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
22.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
22.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
22.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
22.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
22.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
22.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
22.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
22.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
21.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
21.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
21.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
21.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
21.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
21.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
21.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
21.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
21.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
21.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
21.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
21.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
21.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
21.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
21.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
21.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
21.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
21.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
21.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
21.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
20.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
20.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
20.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
20.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
20.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
20.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
20.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
20.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
20.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
20.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
20.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
20.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
20.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
20.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
20.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
19.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
19.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
19.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
19.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
19.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
19.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
19.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
19.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
19.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
19.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
19.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
19.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
19.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
18.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
18.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
18.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
18.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
18.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
18.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
18.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
18.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
18.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
18.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
18.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
17.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
17.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
17.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
17.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
17.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
17.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
17.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
17.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
17.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
17.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
17.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
17.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
17.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
17.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
17.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
17.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
16.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
16.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
16.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
16.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
16.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
16.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
16.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
16.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
16.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
16.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
16.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
16.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
16.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
16.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
15.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
15.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
14.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
13.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
13.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
13.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
13.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
13.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
12.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
12.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
12.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
12.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
12.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
12.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
12.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
11.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
11.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
11.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
11.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
10.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
10.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
10.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
9.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
951
Tumor
1.3
663
Tumor
1.2
865
Tumor
1.0
411
Tumor
1.0
533
Tumor
0.9
1021
Tumor
0.8
727
Tumor
0.8
777
Tumor
0.8
497
Tumor
0.7
483
Tumor
0.7
357
Tumor
0.7
387
Tumor
0.7
957
Tumor
0.7
883
Tumor
0.6
953
Tumor
0.6
1013
Tumor
0.6
615
Tumor
0.6
567
Tumor
0.6
277
Tumor
0.6
737
Tumor
0.6
943
Tumor
0.5
213
Tumor
0.5
513
Tumor
0.5
493
Tumor
0.5
465
Tumor
0.5
741
Tumor
0.5
965
Tumor
0.5
427
Tumor
0.5
647
Tumor
0.5
131
Tumor
0.5
515
Tumor
0.5
147
Tumor
0.5
695
Tumor
0.4
724
Normal
0.4
463
Tumor
0.4
1027
Tumor
0.4
313
Tumor
0.4
685
Tumor
0.4
817
Tumor
0.4
445
Tumor
0.4
813
Tumor
0.4
477
Tumor
0.4
721
Tumor
0.4
1041
Tumor
0.4
491
Tumor
0.4
745
Tumor
0.3
525
Tumor
0.3
141
Tumor
0.3
981
Tumor
0.3
535
Tumor
0.3
471
Tumor
0.3
571
Tumor
0.3
443
Tumor
0.3
355
Tumor
0.3
125
Tumor
0.3
975
Tumor
0.3
517
Tumor
0.3
661
Tumor
0.3
977
Tumor
0.3
423
Tumor
0.3
923
Tumor
0.2
925
Tumor
0.2
814
Normal
0.2
283
Tumor
0.2
921
Tumor
0.2
473
Tumor
0.2
1031
Tumor
0.2
112
Tumor
0.2
227
Tumor
0.2
858
Normal
0.2
686
Normal
0.2
361
Tumor
0.2
161
Tumor
0.2
331
Tumor
0.2
1015
Tumor
0.2
391
Tumor
0.2
696
Normal
0.2
873
Tumor
0.2
537
Tumor
0.2
185
Tumor
0.2
271
Tumor
0.2
375
Tumor
0.2
963
Tumor
0.2
385
Tumor
0.1
433
Tumor
0.1
824
Normal
0.1
815
Tumor
0.1
135
Tumor
0.1
435
Tumor
0.1
211
Tumor
0.1
818
Normal
0.1
123
Tumor
0.1
383
Tumor
0.1
914
Normal
0.1
955
Tumor
0.1
487
Tumor
0.1
884
Normal
0.1
425
Tumor
0.1
746
Normal
0.1
171
Tumor
0.1
415
Tumor
0.1
573
Tumor
0.1
523
Tumor
0.1
852
Normal
0.1
267
Tumor
0.1
192
Normal
0.1
956
Normal
0.0
484
Normal
0.0
285
Tumor
0.0
713
Tumor
0.0
431
Tumor
0.0
257
Tumor
0.0
472
Normal
0.0
627
Tumor
0.0
127
Tumor
0.0
866
Normal
0.0
434
Normal
0.0
461
Tumor
0.0
412
Normal
0.0
878
Normal
0.0
447
Tumor
0.0
136
Normal
0.0
563
Tumor
0.0
823
Tumor
0.0
553
Tumor
0.0
867
Tumor
0.0
284
Normal
0.0
618
Normal
0.0
924
Normal
0.0
186
Normal
0.0
474
Normal
0.0
874
Normal
0.0
635
Tumor
0.0
912
Normal
0.0
138
Normal
0.0
857
Tumor
0.0
172
Normal
0.0
1043
Tumor
0.0
218
Normal
0.0
816
Normal
0.0
851
Tumor
0.0
915
Tumor
0.0
217
Tumor
0.0
137
Tumor
0.0
917
Tumor
0.0
482
Normal
0.0
862
Normal
0.0
913
Tumor
0.0
343
Tumor
0.0
966
Normal
0.0
881
Tumor
0.0
436
Normal
0.0
214
Normal
0.0
421
Tumor
0.0
1045
Tumor
0.0
416
Normal
-0.1
426
Normal
-0.1
492
Normal
-0.1
162
Normal
-0.1
983
Tumor
-0.1
952
Normal
-0.1
494
Normal
-0.1
664
Normal
-0.1
714
Normal
-0.1
937
Tumor
-0.1
231
Tumor
-0.1
554
Normal
-0.1
342
Normal
-0.1
938
Normal
-0.1
911
Tumor
-0.1
716
Normal
-0.1
466
Normal
-0.1
212
Normal
-0.1
861
Tumor
-0.1
142
Normal
-0.1
944
Normal
-0.1
662
Normal
-0.1
341
Tumor
-0.1
221
Tumor
-0.1
916
Normal
-0.1
964
Normal
-0.1
414
Normal
-0.1
516
Normal
-0.1
146
Normal
-0.1
918
Normal
-0.1
452
Normal
-0.1
462
Normal
-0.1
922
Normal
-0.1
648
Normal
-0.1
395
Tumor
-0.1
526
Normal
-0.1
132
Normal
-0.1
278
Normal
-0.1
272
Normal
-0.1
1026
Normal
-0.1
446
Normal
-0.1
481
Tumor
-0.1
1028
Normal
-0.1
148
Normal
-0.1
744
Normal
-0.1
742
Normal
-0.1
228
Normal
-0.1
882
Normal
-0.1
286
Normal
-0.1
728
Normal
-0.1
312
Normal
-0.1
351
Tumor
-0.1
546
Normal
-0.1
636
Normal
-0.1
864
Normal
-0.1
1046
Normal
-0.1
388
Normal
-0.1
976
Normal
-0.1
448
Normal
-0.1
738
Normal
-0.1
258
Normal
-0.1
666
Normal
-0.1
926
Normal
-0.2
262
Normal
-0.2
464
Normal
-0.2
268
Normal
-0.2
367
Tumor
-0.2
188
Normal
-0.2
356
Normal
-0.2
697
Tumor
-0.2
455
Tumor
-0.2
422
Normal
-0.2
432
Normal
-0.2
488
Normal
-0.2
126
Normal
-0.2
698
Normal
-0.2
778
Normal
-0.2
722
Normal
-0.2
558
Normal
-0.2
386
Normal
-0.2
968
Normal
-0.2
451
Tumor
-0.2
344
Normal
-0.2
111
Normal
-0.2
642
Normal
-0.2
363
Tumor
-0.2
114
Normal
-0.2
1016
Normal
-0.2
498
Normal
-0.2
365
Tumor
-0.2
954
Normal
-0.2
1044
Normal
-0.2
456
Normal
-0.2
393
Tumor
-0.2
428
Normal
-0.2
1022
Normal
-0.2
868
Normal
-0.2
478
Normal
-0.2
514
Normal
-0.2
364
Normal
-0.2
332
Normal
-0.2
128
Normal
-0.2
545
Tumor
-0.2
298
Normal
-0.2
424
Normal
-0.2
982
Normal
-0.2
297
Tumor
-0.2
222
Normal
-0.2
327
Tumor
-0.2
396
Normal
-0.3
413
Tumor
-0.3
756
Normal
-0.3
785
Tumor
-0.3
568
Normal
-0.3
444
Normal
-0.3
524
Normal
-0.3
536
Normal
-0.3
572
Normal
-0.3
518
Normal
-0.3
362
Normal
-0.3
232
Normal
-0.3
958
Normal
-0.3
196
Normal
-0.3
224
Normal
-0.3
468
Normal
-0.3
538
Normal
-0.3
534
Normal
-0.3
877
Tumor
-0.3
358
Normal
-0.3
368
Normal
-0.3
557
Tumor
-0.3
1014
Normal
-0.3
574
Normal
-0.3
1042
Normal
-0.3
311
Tumor
-0.3
376
Normal
-0.3
394
Normal
-0.3
863
Tumor
-0.4
366
Normal
-0.4
984
Normal
-0.4
195
Tumor
-0.4
261
Tumor
-0.4
187
Tumor
-0.4
467
Tumor
-0.4
978
Normal
-0.4
665
Tumor
-0.4
672
Normal
-0.4
113
Tumor
-0.4
124
Normal
-0.4
967
Tumor
-0.4
392
Normal
-0.4
723
Tumor
-0.4
527
Tumor
-0.4
328
Normal
-0.4
628
Normal
-0.4
528
Normal
-0.4
384
Normal
-0.4
314
Normal
-0.4
564
Normal
-0.4
352
Normal
-0.4
1025
Tumor
-0.4
743
Tumor
-0.4
786
Normal
-0.5
1032
Normal
-0.5
145
Tumor
-0.5
671
Tumor
-0.5
616
Normal
-0.5
353
Tumor
-0.5
354
Normal
-0.5
715
Tumor
-0.5
191
Tumor
-0.6
617
Tumor
-0.6
755
Tumor
-0.6
641
Tumor
-0.6
223
Tumor
-0.7
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
