MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:5.8 nTPM
HPA Brain:9.1 nTPM
GTEx:5.8 nTPM
FANTOM5:17.6 Scaled Tags Per Million
Pig:31.3 nTPM
Mouse:22.5 nTPM
Allen mouse:2.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Brain excitatory neuronsBrain inhibitory neuronsOther brain neuronsAstrocytesBergmann gliaOligodendrocyte progenitor cellsOligodendrocytesMicrogliaEpendymal cellsChoroid plexus epithelial cellsVascular endothelial cellsPericytesVascular smooth muscle cellsFibroblastsMonocytesMacrophagesT-cellsB-cellsNK-cells05101520nCPM

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 9.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 6.9
1827 Male, age 72, unknown 7.9
1870 Female, age 42, unknown 7.8
1830 Male, age 51, unknown 7.3
2219 Male, age 76, both hemispheres 7.2
2411 Female, age 72, unknown 7.1
1833 Male, age 53, unknown 6.8
2666 Male, age 74, left hemisphere 6.8
2019 Male, age 18, unknown 6.4
2828 Female, age 72, unknown 5.8
2586 Male, age 75, left hemisphere 5.7
Dorsal raphe nucleus
nTPM: 7.6
2298 Female, age 72, unknown 9.9
2047 Male, age 72, unknown 7.5
1828 Male, age 53, unknown 7.1
2750 Male, age 76, both hemispheres 7.0
2016 Female, age 72, unknown 6.3
Inferior colliculus
nTPM: 8.8
2849 Male, age 72, unknown 8.9
1848 Female, age 42, unknown 8.8
1890 Male, age 53, unknown 8.8
2097 Female, age 72, unknown 8.5
Median raphe nucleus
nTPM: 9.1
2220 Male, age 76, midline 9.1
Periaquaductal grey, anterior
nTPM: 7.5
1795 Male, age 51, unknown 8.2
2502 Female, age 75, unknown 7.6
1947 Male, age 18, unknown 6.8
Periaquaductal grey, dorsal
nTPM: 8.8
1831 Male, age 72, unknown 9.2
1840 Male, age 53, unknown 9.2
2464 Female, age 72, unknown 8.4
2850 Male, age 76, both hemispheres 8.4
Periaquaductal grey, lateral
nTPM: 9.1
2272 Male, age 74, both hemispheres 10.6
2053 Male, age 18, unknown 9.7
2140 Male, age 76, both hemispheres 6.9
Pretectal area
nTPM: 8.5
1816 Male, age 51, unknown 11.0
2224 Female, age 72, unknown 10.0
2825 Male, age 18, unknown 9.6
2667 Female, age 75, unknown 9.1
2273 Male, age 74, both hemispheres 8.7
1817 Female, age 42, unknown 8.3
1944 Female, age 72, unknown 8.3
1815 Male, age 53, unknown 8.0
2407 Male, age 75, both hemispheres 7.9
2007 Male, age 72, unknown 7.1
2316 Male, age 76, right hemisphere 5.9
Red nucleus
nTPM: 6.7
2725 Female, age 75, unknown 8.1
2823 Male, age 76, right hemisphere 8.1
1821 Female, age 72, unknown 7.7
1954 Female, age 42, unknown 6.9
2227 Male, age 72, unknown 6.9
2584 Male, age 75, left hemisphere 6.6
2588 Male, age 74, left hemisphere 6.5
1904 Male, age 53, unknown 6.1
2503 Female, age 72, unknown 6.1
2769 Male, age 72, unknown 6.1
1865 Male, age 51, unknown 5.6
2785 Male, age 18, unknown 5.4
Substantia nigra
nTPM: 8.2
1889 Female, age 72, unknown 9.4
1941 Male, age 53, unknown 9.4
1916 Female, age 42, unknown 9.2
2241 Male, age 72, unknown 9.2
2665 Male, age 74, both hemispheres 9.1
2699 Male, age 18, unknown 7.9
2409 Female, age 72, unknown 7.6
1851 Male, age 51, unknown 7.3
2590 Female, age 75, unknown 6.9
2583 Male, age 75, right hemisphere 6.1
Superior colliculus
nTPM: 7.9
2261 Male, age 18, unknown 9.5
1895 Male, age 76, right hemisphere 9.0
2087 Female, age 72, unknown 8.7
2587 Male, age 74, left hemisphere 8.3
1796 Male, age 53, unknown 8.0
2664 Male, age 75, both hemispheres 8.0
1913 Female, age 42, unknown 7.2
1995 Male, age 72, unknown 7.1
2668 Female, age 75, unknown 7.0
1839 Male, age 51, unknown 6.7
Ventral tegmental area
nTPM: 7.9
2218 Male, age 76, both hemispheres 9.0
1915 Female, age 42, unknown 8.0
1942 Male, age 51, unknown 7.9
2021 Male, age 53, unknown 7.7
2223 Female, age 72, unknown 7.7
2410 Female, age 72, unknown 7.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 5.8
GTEx sample id Sample description nTPM
4.35.56.82.210.301234567891011
Brain - Substantia nigra
Average nTPM: 5.8
Samples: 183

Max nTPM: 11.6
Min nTPM: 2.2
Std nTPM: 1.9
Median nTPM: 5.5
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 11.6
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 11.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 10.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 10.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 10.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 9.9
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 9.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 9.7
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 9.4
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 9.1
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 9.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 17.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 17.6
FF:10158-103A5 76 years, female 17.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 31.3
Pig sample Sample description nTPM
25.627.330.823.728.205101520253035
 		Substantia nigra
nTPM: 29.2
Samples: 4

Max nTPM: 38.5
Min nTPM: 23.7
Sample A Female 38.5
Sample B Female 23.7
Sample C Male 28.2
Sample D Male 26.3
Midbrain
nTPM: 29.2
Samples: 4

Max nTPM: 32.4
Min nTPM: 26.5
Sample A Female 32.4
Sample B Female 27.3
Sample C Male 26.5
Sample D Male 30.4
24.825.726.023.926.302468101214161820222426
 		Periaqueductal gray
nTPM: 25.3
Samples: 3

Max nTPM: 26.3
Min nTPM: 23.9
Sample B Female 23.9
Sample C Male 25.7
Sample D Male 26.3
27.829.332.827.639.005101520253035
 		Superior colliculi
nTPM: 31.3
Samples: 4

Max nTPM: 39.0
Min nTPM: 27.6
Sample A Female 39.0
Sample B Female 27.8
Sample C Male 27.6
Sample D Male 30.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 22.5
Mouse sample Sample description nTPM
22.123.223.620.023.60246810121416182022
 		Midbrain
nTPM: 22.5
Samples: 4

Max nTPM: 23.6
Min nTPM: 20.0
Sample A Male 23.6
Sample B Male 20.0
Sample C Female 22.8
Sample D Female 23.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.3
77454963 Antisense, RP_070129_01_E06, Mouse strain C57BL/6J (56 days, male) 2.3

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