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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
24.0
nTPM
HPA Brain:
110.3
nTPM
GTEx:
24.0
nTPM
FANTOM5:
1.5
Scaled Tags Per Million
Pig:
23.2
nTPM
Mouse:
19.7
nTPM
Allen mouse:
0.7
Expression energy
MIDBRAIN - Annotated protein expression
Pending normal tissue analysis
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
110.3
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 40.6
2828
Female, age 72, unknown
117.7
2019
Male, age 18, unknown
65.1
1827
Male, age 72, unknown
58.9
2666
Male, age 74, left hemisphere
34.4
2219
Male, age 76, both hemispheres
33.0
2586
Male, age 75, left hemisphere
23.8
2411
Female, age 72, unknown
22.0
1870
Female, age 42, unknown
20.4
1833
Male, age 53, unknown
18.0
1830
Male, age 51, unknown
13.3
Dorsal raphe nucleus nTPM: 16.7
2298
Female, age 72, unknown
28.9
2047
Male, age 72, unknown
17.0
1828
Male, age 53, unknown
14.0
2750
Male, age 76, both hemispheres
12.6
2016
Female, age 72, unknown
11.0
Inferior colliculus nTPM: 61.4
2097
Female, age 72, unknown
102.7
1890
Male, age 53, unknown
73.3
1848
Female, age 42, unknown
46.2
2849
Male, age 72, unknown
23.3
Median raphe nucleus nTPM: 16.5
2220
Male, age 76, midline
16.5
Periaquaductal grey, anterior nTPM: 28.5
1795
Male, age 51, unknown
43.2
2502
Female, age 75, unknown
30.6
1947
Male, age 18, unknown
11.5
Periaquaductal grey, dorsal nTPM: 35.2
1831
Male, age 72, unknown
45.1
2464
Female, age 72, unknown
35.4
2850
Male, age 76, both hemispheres
32.0
1840
Male, age 53, unknown
28.3
Periaquaductal grey, lateral nTPM: 19.8
2053
Male, age 18, unknown
29.2
2140
Male, age 76, both hemispheres
19.3
2272
Male, age 74, both hemispheres
10.9
Pretectal area nTPM: 110.3
1816
Male, age 51, unknown
238.9
1944
Female, age 72, unknown
215.4
1817
Female, age 42, unknown
196.1
1815
Male, age 53, unknown
186.8
2007
Male, age 72, unknown
144.7
2667
Female, age 75, unknown
134.1
2316
Male, age 76, right hemisphere
29.8
2273
Male, age 74, both hemispheres
24.5
2825
Male, age 18, unknown
17.7
2407
Male, age 75, both hemispheres
13.0
2224
Female, age 72, unknown
12.2
Red nucleus nTPM: 39.2
2785
Male, age 18, unknown
72.2
2588
Male, age 74, left hemisphere
65.9
2503
Female, age 72, unknown
56.2
1954
Female, age 42, unknown
46.1
1904
Male, age 53, unknown
41.9
2823
Male, age 76, right hemisphere
38.1
1821
Female, age 72, unknown
29.5
1865
Male, age 51, unknown
27.8
2769
Male, age 72, unknown
27.4
2227
Male, age 72, unknown
25.9
2584
Male, age 75, left hemisphere
23.5
2725
Female, age 75, unknown
16.3
Substantia nigra nTPM: 39.1
1889
Female, age 72, unknown
150.0
2409
Female, age 72, unknown
51.8
2665
Male, age 74, both hemispheres
44.1
1851
Male, age 51, unknown
27.3
2699
Male, age 18, unknown
25.9
2590
Female, age 75, unknown
22.6
2583
Male, age 75, right hemisphere
20.8
1916
Female, age 42, unknown
18.2
1941
Male, age 53, unknown
17.0
2241
Male, age 72, unknown
12.9
Superior colliculus nTPM: 72.2
2087
Female, age 72, unknown
214.5
1913
Female, age 42, unknown
95.0
1995
Male, age 72, unknown
91.0
2261
Male, age 18, unknown
77.1
1796
Male, age 53, unknown
73.4
2668
Female, age 75, unknown
62.4
1895
Male, age 76, right hemisphere
39.5
2664
Male, age 75, both hemispheres
25.6
2587
Male, age 74, left hemisphere
23.6
1839
Male, age 51, unknown
19.7
Ventral tegmental area nTPM: 19.2
2410
Female, age 72, unknown
30.5
1915
Female, age 42, unknown
26.3
1942
Male, age 51, unknown
25.4
2218
Male, age 76, both hemispheres
14.2
2021
Male, age 53, unknown
11.6
2223
Female, age 72, unknown
7.2
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
24.0
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 24.0
Samples: 139
Max nTPM: 247.0
Min nTPM: 0.3
Std nTPM: 30.6
Median nTPM: 13.0
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
247.0
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
152.4
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
108.9
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
103.0
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
97.6
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
91.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
83.1
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
79.1
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
73.2
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
63.9
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
56.0
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
54.2
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
54.1
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
51.7
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
51.0
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
48.4
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
47.3
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
47.0
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
46.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
45.4
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
43.7
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
43.0
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
38.5
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
36.4
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
34.7
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
34.5
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
34.2
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
33.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
33.5
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
33.2
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
33.2
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
32.9
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
32.7
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
32.3
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
30.2
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
29.7
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
29.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
28.8
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
26.7
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
26.3
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
26.2
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
25.5
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
24.0
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
23.9
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
23.9
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
22.6
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
22.3
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
22.2
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
21.9
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
21.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
21.3
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
19.8
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
19.0
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
17.8
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
17.6
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
16.2
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
16.2
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
16.1
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
16.0
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
16.0
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
15.6
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
15.1
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
14.5
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
14.4
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
14.4
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
14.2
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
14.0
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
13.5
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
13.3
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
13.0
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
12.5
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
12.4
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
12.3
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
12.2
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
12.1
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
11.8
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
11.7
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
11.6
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
11.5
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
11.4
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
11.4
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
11.3
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
11.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
10.6
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
10.5
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
10.4
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
10.3
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
10.0
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
9.9
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
9.6
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
9.3
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
9.3
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
9.1
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
9.1
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
9.1
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
9.1
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
9.0
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
9.0
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
8.9
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
8.9
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
8.9
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
8.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
8.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
8.4
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
8.1
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
8.0
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
7.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
7.8
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
7.1
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
7.1
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
6.9
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
6.8
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
6.6
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
6.3
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
5.9
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
5.9
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
5.7
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
5.6
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
5.3
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
5.2
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
5.1
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
5.0
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
4.8
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
4.7
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
4.3
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
4.1
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
4.0
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
3.9
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
3.7
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
3.6
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
3.6
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
3.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
3.2
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
2.5
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
2.5
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
1.9
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
1.5
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
1.1
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
0.3
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
19.7
Mouse sample
Sample description
nTPM
Midbrain nTPM: 19.7
Samples: 4
Max nTPM: 20.8
Min nTPM: 18.4
Sample A
Male
19.0
Sample B
Male
18.4
Sample C
Female
20.5
Sample D
Female
20.8
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.