HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
RNA expressioni
Consensus:91.3 nTPM
HPA Brain:115.7 nTPM
GTEx:91.3 nTPM
FANTOM5:212.9 Scaled Tags Per Million
Mouse:60.6 nTPM
Allen mouse:3.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Brain excitatory neuronsBrain inhibitory neuronsOther brain neuronsAstrocytesBergmann gliaOligodendrocyte progenitor cellsOligodendrocytesMicrogliaEpendymal cellsChoroid plexus epithelial cellsVascular endothelial cellsPericytesVascular smooth muscle cellsFibroblastsMonocytesMacrophagesT-cellsB-cellsNK-cells050100150200nCPM

HIPPOCAMPUS - Antibody stainingi
Antibody CAB034146
Glial cells Low
Neuronal cells Not detected


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 115.7
Sample id Sample description nTPM
Hippocampus
nTPM: 115.7
2529 Female, age 94, left hemisphere 134.8
1911 Female, age 85, right hemisphere 123.6
2148 Female, age 91, left hemisphere 122.7
1898 Male, age 80, left hemisphere 118.5
1855 Male, age 76, left hemisphere 104.1
2621 Female, age 67, right hemisphere 90.7
Dentate gyrus
nTPM: 104.9
2528 Male, age 74, both hemispheres 133.5
2010 Male, age 76, both hemispheres 113.7
2246 Female, age 85, both hemispheres 108.0
2530 Female, age 94, left hemisphere 97.7
2531 Female, age 67, both hemispheres 88.7
1927 Female, age 91, both hemispheres 88.1
Entorhinal gyrus
nTPM: 91.0
2117 Female, age 91, right hemisphere 133.0
1787 Male, age 76, left hemisphere 96.5
2686 Male, age 75, right hemisphere 88.7
1938 Female, age 85, left hemisphere 86.7
2764 Male, age 80, right hemisphere 80.4
2613 Female, age 94, left hemisphere 60.9
Hippocampus, CA1
nTPM: 112.3
2527 Male, age 74, both hemispheres 120.2
2045 Male, age 76, both hemispheres 118.2
1873 Female, age 85, both hemispheres 117.8
2082 Female, age 91, right hemisphere 117.3
2749 Male, age 80, left hemisphere 87.9
Hippocampus, CA2
nTPM: 109.7
2113 Female, age 91, right hemisphere 125.1
1963 Male, age 80, left hemisphere 123.1
2249 Male, age 74, both hemispheres 121.2
1940 Female, age 85, left hemisphere 118.1
2437 Female, age 94, left hemisphere 92.6
1892 Male, age 76, both hemispheres 78.0
Hippocampus, CA3
nTPM: 105.0
1891 Female, age 85, both hemispheres 122.8
2436 Male, age 74, both hemispheres 112.5
1867 Male, age 76, both hemispheres 105.8
2861 Female, age 67, both hemispheres 99.9
2620 Female, age 94, left hemisphere 99.3
2137 Male, age 80, left hemisphere 89.7
Parahippocampal cortex
nTPM: 89.0
2018 Male, age 76, both hemispheres 114.8
2692 Male, age 74, both hemispheres 112.1
2250 Female, age 67, right hemisphere 92.4
1990 Female, age 91, right hemisphere 92.2
2245 Female, age 91, both hemispheres 89.3
1933 Female, age 85, both hemispheres 88.6
2622 Female, age 67, right hemisphere 81.5
1850 Male, age 80, both hemispheres 75.3
2532 Female, age 72, left hemisphere 74.1
2693 Female, age 94, both hemispheres 69.2
Perirhinal gyrus
nTPM: 79.2
2521 Female, age 94, right hemisphere 85.7
1794 Male, age 80, right hemisphere 81.8
1841 Female, age 85, right hemisphere 79.3
1847 Female, age 91, left hemisphere 79.2
2848 Male, age 76, right hemisphere 70.0
Subiculum
nTPM: 113.1
2729 Female, age 91, right hemisphere 139.4
2619 Male, age 74, both hemispheres 124.0
2042 Male, age 76, both hemispheres 116.5
1901 Male, age 80, both hemispheres 100.3
1977 Female, age 85, both hemispheres 99.8
2438 Female, age 94, left hemisphere 98.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 91.3
GTEx sample id Sample description nTPM
74.089.3106.231.8153.9020406080100120140160
Brain - Hippocampus
Average nTPM: 91.3
Samples: 255

Max nTPM: 171.8
Min nTPM: 31.8
Std nTPM: 25.2
Median nTPM: 89.3
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 171.8
GTEX-1LKK1-0011-R1b-SM-F2TAF 50-59 years, female 163.1
GTEX-12696-0011-R1a-SM-GHWPW 60-69 years, male 161.3
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 160.2
GTEX-1PWST-0011-R1b-SM-F2I38 70-79 years, male 153.9
GTEX-ZYFD-0011-R1b-SM-GRR1T 50-59 years, male 152.4
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 149.9
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 145.3
GTEX-1JMQL-0011-R1a-SM-F3K4U 50-59 years, female 144.1
GTEX-11TTK-0011-R1b-SM-GIN92 60-69 years, female 144.0
GTEX-1RNSC-0011-R1b-SM-F342D 60-69 years, male 138.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 212.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 212.9
FF:10153-102I9 76 years, female 269.1
FF:10169-103B7 60 years, female 156.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 60.6
Mouse sample Sample description nTPM
52.355.958.750.058.80510152025303540455055
 		Entorhinal cortex
nTPM: 55.2
Samples: 4

Max nTPM: 58.8
Min nTPM: 50.0
Sample A Male 58.7
Sample B Male 50.0
Sample C Female 58.8
Sample D Female 53.1
58.660.762.758.163.0051015202530354045505560
 		Hippocampal formation
nTPM: 60.6
Samples: 4

Max nTPM: 63.0
Min nTPM: 58.1
Sample A Male 63.0
Sample B Male 58.1
Sample C Female 58.7
Sample D Female 62.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 3.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.2
1956 Antisense, RP_Baylor_253962, Mouse strain C57BL/6J (56 days, male) 3.2
1957 Antisense, RP_Baylor_253962, Mouse strain C57BL/6J (56 days, male) 2.3

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