BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni
Consensus:93.4 nTPM
HPA Brain:156.7 nTPM
GTEx:93.4 nTPM
FANTOM5:224.0 Scaled Tags Per Million
Mouse:72.5 nTPM
Allen mouse:4.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Brain excitatory neuronsBrain inhibitory neuronsOther brain neuronsAstrocytesBergmann gliaOligodendrocyte progenitor cellsOligodendrocytesMicrogliaEpendymal cellsChoroid plexus epithelial cellsVascular endothelial cellsPericytesVascular smooth muscle cellsFibroblastsMonocytesMacrophagesT-cellsB-cellsNK-cells050100150200nCPM

CAUDATE - Antibody stainingi
Antibody CAB034146
Glial cells Medium
Neuronal cells Medium


BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 156.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 96.6
2481 Female, age 94, left hemisphere 137.9
2289 Male, age 61, right hemisphere 106.4
1854 Male, age 80, left hemisphere 100.5
1857 Female, age 85, left hemisphere 92.6
1781 Male, age 74, unknown 91.0
2290 Female, age 72, unknown 89.0
2288 Male, age 75, left hemisphere 83.1
2846 Female, age 79, unknown 72.4
Globus pallidus, externus
nTPM: 156.6
1996 Male, age 80, right hemisphere 202.0
2646 Male, age 61, right hemisphere 184.2
2772 Female, age 79, unknown 145.9
2567 Female, age 72, unknown 133.9
2395 Male, age 75, both hemispheres 117.0
Globus pallidus, internus
nTPM: 156.7
2111 Female, age 85, right hemisphere 175.6
2037 Male, age 80, right hemisphere 172.3
2483 Female, age 94, right hemisphere 168.2
1818 Male, age 74, unknown 164.0
2778 Female, age 91, both hemispheres 158.2
2566 Female, age 72, unknown 134.1
2287 Male, age 75, right hemisphere 124.4
Nucleus accumbens
nTPM: 89.7
2732 Male, age 80, right hemisphere 124.5
2391 Female, age 94, left hemisphere 96.5
2698 Female, age 72, unknown 96.4
1806 Female, age 85, left hemisphere 94.9
2286 Male, age 75, left hemisphere 88.3
2824 Male, age 61, right hemisphere 75.5
1783 Male, age 74, unknown 73.9
1856 Female, age 91, right hemisphere 67.5
Nucleus basalis of Meynert
nTPM: 128.2
2569 Male, age 61, both hemispheres 204.7
2484 Female, age 94, left hemisphere 115.3
2393 Male, age 80, right hemisphere 108.1
2821 Male, age 75, both hemispheres 84.8
Nucleus of the diagonal band
nTPM: 84.8
1812 Female, age 91, both hemispheres 111.3
1979 Male, age 74, unknown 94.6
2775 Male, age 80, right hemisphere 76.3
2029 Male, age 61, right hemisphere 71.3
2195 Female, age 85, both hemispheres 70.7
Putamen
nTPM: 94.1
2482 Female, age 94, left hemisphere 121.3
2647 Male, age 75, left hemisphere 109.0
2489 Female, age 72, unknown 101.3
1829 Male, age 74, unknown 99.0
1937 Female, age 91, right hemisphere 84.1
1838 Male, age 80, right hemisphere 73.8
2466 Female, age 79, unknown 70.5
Septal nuclei
nTPM: 96.8
2199 Male, age 80, right hemisphere 126.2
2394 Male, age 61, left hemisphere 122.1
2059 Female, age 85, both hemispheres 108.2
2009 Female, age 91, both hemispheres 91.4
1960 Male, age 74, unknown 79.6
2629 Female, age 94, right hemisphere 75.8
2031 Female, age 72, unknown 74.3
Stria terminalis, bed nucleus
nTPM: 80.9
2201 Male, age 74, unknown 93.0
1974 Female, age 91, both hemispheres 83.9
2486 Female, age 94, both hemispheres 65.9

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 93.4
GTEx sample id Sample description nTPM
62.782.5111.634.1183.2020406080100120140160180200220240260
Brain - Caudate (basal ganglia)
Average nTPM: 91.8
Samples: 300

Max nTPM: 262.4
Min nTPM: 34.1
Std nTPM: 39.8
Median nTPM: 82.5
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 262.4
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 254.2
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 238.9
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 220.2
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 218.9
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 190.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 188.6
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 186.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 185.7
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 183.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 183.0
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53.767.298.131.5164.6020406080100120140160180200220240260280300
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 78.4
Samples: 285

Max nTPM: 307.8
Min nTPM: 31.5
Std nTPM: 36.4
Median nTPM: 67.2
GTEX-1NV5F-0011-R6a-SM-G8LKG 60-69 years, female 307.8
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 230.1
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 214.1
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 201.4
GTEX-14BIL-0011-R6b-SM-GPRXF 50-59 years, male 198.1
GTEX-11EMC-0011-R6b-SM-GIN8N 60-69 years, female 185.0
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 184.2
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 166.4
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 164.6
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 158.7
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 157.8
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63.885.6114.127.4181.6020406080100120140160180200220240
Brain - Putamen (basal ganglia)
Average nTPM: 93.4
Samples: 254

Max nTPM: 255.7
Min nTPM: 27.4
Std nTPM: 40.2
Median nTPM: 85.6
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 255.7
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 253.7
GTEX-16XZZ-0011-R7b-SM-7MGVT 60-69 years, male 244.1
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 226.8
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 212.9
GTEX-ZZPT-0011-R7a-SM-H7OH8 50-59 years, male 197.9
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 194.3
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 191.6
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 181.6
GTEX-1JMQL-0011-R7b-SM-F649W 50-59 years, female 180.9
GTEX-11EMC-0011-R7a-SM-GJ3PL 60-69 years, female 180.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 224.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 156.9
FF:10164-103B2 76 years, female 156.9
Nucleus accumbens
Scaled Tags Per Million: 121.3
FF:10037-101F1 23-56 years, mixed 121.3
Putamen
Scaled Tags Per Million: 110.2
FF:10176-103C5 60 years, female 110.2
Globus pallidus
Scaled Tags Per Million: 224.0
FF:10161-103A8 76 years, female 250.3
FF:10175-103C4 60 years, female 197.7

BASAL GANGLIA - Mouse RNA-seqi
Max subtype nTPMi 72.5
Mouse sample Sample description nTPM
68.673.477.365.377.9010203040506070
 		Caudate putamen
nTPM: 72.5
Samples: 4

Max nTPM: 77.9
Min nTPM: 65.3
Sample A Male 69.7
Sample B Male 65.3
Sample C Female 77.1
Sample D Female 77.9
67.170.472.161.173.0010203040506070
 		Septum
nTPM: 68.8
Samples: 4

Max nTPM: 73.0
Min nTPM: 61.1
Sample A Male 61.1
Sample B Male 71.8
Sample C Female 73.0
Sample D Female 69.1
64.067.272.862.481.701020304050607080
 		Ventral forebrain
nTPM: 69.6
Samples: 4

Max nTPM: 81.7
Min nTPM: 62.4
Sample A Male 64.5
Sample B Male 69.8
Sample C Female 81.7
Sample D Female 62.4

BASAL GANGLIA - Allen Mouse ISHi
Max subtype Expression energyi 4.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 4.4
1957 Antisense, RP_Baylor_253962, Mouse strain C57BL/6J (56 days, male) 4.4
1956 Antisense, RP_Baylor_253962, Mouse strain C57BL/6J (56 days, male) 2.8
Pallidum
Expression energy: 2.8
1957 Antisense, RP_Baylor_253962, Mouse strain C57BL/6J (56 days, male) 2.8
1956 Antisense, RP_Baylor_253962, Mouse strain C57BL/6J (56 days, male) 2.2

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