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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PTTG1IP is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
74.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
322.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
292.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
280.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
247.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
232.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
223.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
200.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
194.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
184.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
183.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
179.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
177.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
176.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
163.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
160.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
159.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
158.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
155.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
155.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
152.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
147.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
142.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
139.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
134.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
134.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
132.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
131.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
128.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
127.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
127.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
125.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
123.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
123.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
121.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
121.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
120.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
119.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
118.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
116.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
116.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
116.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
114.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
113.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
113.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
112.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
112.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
111.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
111.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
110.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
110.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
110.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
109.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
108.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
108.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
107.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
107.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
106.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
106.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
103.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
102.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
102.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
101.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
101.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
100.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
100.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
100.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
99.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
98.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
97.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
97.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
96.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
95.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
95.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
95.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
95.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
95.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
94.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
94.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
94.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
94.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
93.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
93.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
92.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
92.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
91.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
91.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
90.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
90.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
90.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
89.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
89.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
89.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
89.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
88.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
88.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
88.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
87.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
86.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
86.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
86.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
86.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
85.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
85.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
85.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
85.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
84.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
84.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
84.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
83.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
83.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
83.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
82.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
82.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
82.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
81.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
81.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
81.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
80.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
80.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
79.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
79.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
79.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
79.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
78.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
78.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
78.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
78.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
77.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
77.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
76.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
76.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
75.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
75.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
75.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
74.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
74.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
74.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
74.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
74.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
74.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
73.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
73.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
73.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
73.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
73.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
72.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
72.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
72.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
72.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
72.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
71.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
71.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
71.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
71.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
71.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
71.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
71.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
71.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
70.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
70.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
70.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
70.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
70.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
70.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
70.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
69.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
69.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
69.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
69.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
69.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
69.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
69.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
68.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
68.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
68.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
68.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
68.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
68.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
66.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
66.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
65.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
65.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
65.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
65.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
65.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
65.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
64.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
63.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
63.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
62.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
62.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
62.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
61.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
61.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
60.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
60.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
60.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
60.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
60.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
60.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
59.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
59.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
59.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
59.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
59.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
59.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
59.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
59.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
59.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
58.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
58.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
58.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
58.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
58.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
58.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
57.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
57.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
57.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
57.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
57.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
57.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
57.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
57.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
57.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
57.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
56.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
56.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
56.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
56.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
56.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
56.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
56.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
56.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
56.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
55.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
55.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
55.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
55.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
55.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
55.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
54.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
54.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
54.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
54.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
53.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
53.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
53.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
53.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
53.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
52.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
52.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
52.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
52.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
51.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
51.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
51.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
50.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
50.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
50.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
50.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
49.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
49.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
49.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
49.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
49.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
48.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
48.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
48.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
48.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
47.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
47.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
47.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
47.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
47.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
47.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
47.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
47.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
47.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
46.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
46.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
46.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
45.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
44.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
44.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
44.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
44.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
44.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
44.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
44.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
43.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
43.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
43.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
43.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
43.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
43.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
43.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
42.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
42.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
42.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
42.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
42.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
42.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
42.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
42.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
41.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
41.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
41.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
41.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
40.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
40.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
40.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
39.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
39.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
39.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
39.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
39.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
39.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
39.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
38.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
38.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
38.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
38.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
37.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
37.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
36.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
36.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
36.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
35.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
35.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
34.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
34.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
33.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
33.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
33.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
33.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
33.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
33.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
32.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
31.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
30.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
30.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
30.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
30.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
28.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
28.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
28.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
28.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
27.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
27.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
27.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
27.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
27.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
27.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
27.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
26.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
25.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
25.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
23.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
22.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
18.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
18.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PTTG1IP is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
68.8
Number of samples
231
Samples
Sample
Description
TPM
DO45289
0 years, female, NA, stage:3, alive, 360 days
324.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
322.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
222.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
209.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
205.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
191.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
190.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
170.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
167.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
161.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
160.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
156.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
154.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
143.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
143.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
138.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
136.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
126.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
123.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
122.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
116.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
115.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
114.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
108.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
108.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
105.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
105.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
104.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
100.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
99.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
99.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
97.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
96.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
96.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
95.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
94.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
93.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
93.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
90.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
90.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
90.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
89.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
88.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
88.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
87.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
86.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
86.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
85.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
84.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
83.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
81.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
80.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
80.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
79.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
78.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
78.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
77.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
77.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
76.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
75.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
75.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
75.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
75.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
75.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
75.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
74.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
74.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
74.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
73.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
73.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
72.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
72.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
71.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
71.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
71.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
71.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
70.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
69.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
69.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
68.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
68.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
67.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
67.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
67.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
66.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
66.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
65.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
65.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
65.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
64.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
64.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
63.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
62.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
61.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
61.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
61.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
61.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
61.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
61.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
61.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
61.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
60.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
60.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
60.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
60.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
59.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
59.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
59.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
58.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
58.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
58.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
58.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
57.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
57.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
57.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
57.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
56.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
56.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
56.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
56.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
55.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
55.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
55.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
55.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
55.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
54.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
54.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
54.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
53.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
53.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
53.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
53.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
53.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
53.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
53.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
52.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
52.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
52.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
52.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
52.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
51.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
51.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
51.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
51.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
51.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
51.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
50.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
50.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
50.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
50.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
50.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
50.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
50.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
50.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
50.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
49.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
49.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
48.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
48.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
48.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
47.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
47.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
47.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
47.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
47.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
46.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
46.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
46.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
45.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
45.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
45.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
45.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
45.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
45.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
44.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
44.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
44.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
44.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
44.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
44.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
43.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
43.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
43.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
43.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
42.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
42.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
41.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
41.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
41.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
40.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
39.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
39.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
39.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
39.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
39.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
38.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
38.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
37.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
37.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
37.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
37.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
37.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
36.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
36.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
36.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
35.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
35.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
34.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
34.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
34.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
34.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
33.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
33.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
32.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
31.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
30.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
29.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
28.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
27.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
27.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
26.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
26.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
25.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
25.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
25.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
24.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
23.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
22.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
21.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
18.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
18.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
477
Tumor
3.5
715
Tumor
3.3
425
Tumor
2.6
471
Tumor
2.2
1025
Tumor
1.7
1043
Tumor
1.6
573
Tumor
1.6
343
Tumor
1.6
363
Tumor
1.5
1041
Tumor
1.3
517
Tumor
1.2
755
Tumor
1.2
911
Tumor
1.2
365
Tumor
1.2
967
Tumor
1.1
483
Tumor
1.1
983
Tumor
1.0
385
Tumor
1.0
493
Tumor
1.0
685
Tumor
1.0
223
Tumor
1.0
963
Tumor
1.0
131
Tumor
0.9
227
Tumor
0.9
743
Tumor
0.9
977
Tumor
0.8
451
Tumor
0.8
663
Tumor
0.8
257
Tumor
0.8
952
Normal
0.8
557
Tumor
0.7
393
Tumor
0.7
537
Tumor
0.7
135
Tumor
0.7
1015
Tumor
0.7
1031
Tumor
0.7
527
Tumor
0.6
125
Tumor
0.6
951
Tumor
0.6
221
Tumor
0.6
271
Tumor
0.6
867
Tumor
0.6
817
Tumor
0.6
567
Tumor
0.6
443
Tumor
0.5
697
Tumor
0.5
975
Tumor
0.5
463
Tumor
0.5
965
Tumor
0.5
313
Tumor
0.5
861
Tumor
0.5
515
Tumor
0.4
746
Normal
0.4
553
Tumor
0.4
737
Tumor
0.4
395
Tumor
0.4
554
Normal
0.4
147
Tumor
0.4
957
Tumor
0.3
823
Tumor
0.3
171
Tumor
0.3
491
Tumor
0.3
538
Normal
0.3
617
Tumor
0.3
231
Tumor
0.3
421
Tumor
0.3
915
Tumor
0.3
955
Tumor
0.3
497
Tumor
0.3
865
Tumor
0.2
285
Tumor
0.2
815
Tumor
0.2
361
Tumor
0.2
112
Tumor
0.2
455
Tumor
0.2
413
Tumor
0.2
863
Tumor
0.2
713
Tumor
0.2
745
Tumor
0.2
921
Tumor
0.2
981
Tumor
0.2
283
Tumor
0.2
362
Normal
0.2
124
Normal
0.1
1021
Tumor
0.1
297
Tumor
0.1
368
Normal
0.1
813
Tumor
0.1
461
Tumor
0.1
141
Tumor
0.1
744
Normal
0.1
136
Normal
0.1
375
Tumor
0.1
111
Normal
0.1
137
Tumor
0.1
277
Tumor
0.0
695
Tumor
0.0
217
Tumor
0.0
376
Normal
0.0
671
Tumor
0.0
1027
Tumor
0.0
446
Normal
0.0
357
Tumor
0.0
943
Tumor
0.0
741
Tumor
0.0
436
Normal
-0.1
452
Normal
-0.1
344
Normal
-0.1
355
Tumor
-0.1
883
Tumor
-0.1
433
Tumor
-0.1
473
Tumor
-0.1
464
Normal
-0.1
261
Tumor
-0.1
258
Normal
-0.1
187
Tumor
-0.1
212
Normal
-0.1
664
Normal
-0.1
142
Normal
-0.1
387
Tumor
-0.1
127
Tumor
-0.1
195
Tumor
-0.1
492
Normal
-0.1
435
Tumor
-0.2
224
Normal
-0.2
432
Normal
-0.2
185
Tumor
-0.2
434
Normal
-0.2
444
Normal
-0.2
312
Normal
-0.2
218
Normal
-0.2
351
Tumor
-0.2
412
Normal
-0.2
213
Tumor
-0.2
367
Tumor
-0.2
545
Tumor
-0.2
331
Tumor
-0.2
278
Normal
-0.2
268
Normal
-0.2
851
Tumor
-0.2
366
Normal
-0.2
778
Normal
-0.2
411
Tumor
-0.2
267
Tumor
-0.2
113
Tumor
-0.2
738
Normal
-0.2
558
Normal
-0.2
662
Normal
-0.2
298
Normal
-0.2
128
Normal
-0.2
874
Normal
-0.2
228
Normal
-0.3
445
Tumor
-0.3
114
Normal
-0.3
923
Tumor
-0.3
937
Tumor
-0.3
386
Normal
-0.3
661
Tumor
-0.3
422
Normal
-0.3
172
Normal
-0.3
354
Normal
-0.3
192
Normal
-0.3
456
Normal
-0.3
877
Tumor
-0.3
564
Normal
-0.3
563
Tumor
-0.3
572
Normal
-0.3
574
Normal
-0.3
214
Normal
-0.3
311
Tumor
-0.3
466
Normal
-0.3
145
Tumor
-0.3
396
Normal
-0.3
262
Normal
-0.3
126
Normal
-0.3
138
Normal
-0.3
314
Normal
-0.3
571
Tumor
-0.4
568
Normal
-0.4
914
Normal
-0.4
474
Normal
-0.4
132
Normal
-0.4
525
Tumor
-0.4
392
Normal
-0.4
868
Normal
-0.4
426
Normal
-0.4
353
Tumor
-0.4
648
Normal
-0.4
864
Normal
-0.4
358
Normal
-0.4
352
Normal
-0.4
966
Normal
-0.4
232
Normal
-0.4
953
Tumor
-0.4
391
Tumor
-0.4
1013
Tumor
-0.4
878
Normal
-0.4
728
Normal
-0.5
881
Tumor
-0.5
518
Normal
-0.5
431
Tumor
-0.5
148
Normal
-0.5
272
Normal
-0.5
384
Normal
-0.5
647
Tumor
-0.5
146
Normal
-0.5
383
Tumor
-0.5
714
Normal
-0.5
327
Tumor
-0.5
487
Tumor
-0.5
465
Tumor
-0.5
723
Tumor
-0.5
162
Normal
-0.5
467
Tumor
-0.5
423
Tumor
-0.5
211
Tumor
-0.5
188
Normal
-0.5
956
Normal
-0.5
186
Normal
-0.5
816
Normal
-0.5
666
Normal
-0.6
866
Normal
-0.6
618
Normal
-0.6
777
Tumor
-0.6
161
Tumor
-0.6
742
Normal
-0.6
364
Normal
-0.6
356
Normal
-0.6
814
Normal
-0.6
516
Normal
-0.6
862
Normal
-0.6
686
Normal
-0.6
222
Normal
-0.6
523
Tumor
-0.6
1028
Normal
-0.6
785
Tumor
-0.6
925
Tumor
-0.6
513
Tumor
-0.6
642
Normal
-0.6
123
Tumor
-0.6
428
Normal
-0.6
196
Normal
-0.7
394
Normal
-0.7
627
Tumor
-0.7
924
Normal
-0.7
913
Tumor
-0.7
388
Normal
-0.7
615
Tumor
-0.7
722
Normal
-0.7
424
Normal
-0.7
636
Normal
-0.7
535
Tumor
-0.7
917
Tumor
-0.7
672
Normal
-0.7
342
Normal
-0.7
635
Tumor
-0.7
341
Tumor
-0.7
628
Normal
-0.7
468
Normal
-0.7
696
Normal
-0.7
616
Normal
-0.7
526
Normal
-0.8
938
Normal
-0.8
414
Normal
-0.8
415
Tumor
-0.8
427
Tumor
-0.8
533
Tumor
-0.8
286
Normal
-0.8
641
Tumor
-0.8
448
Normal
-0.8
944
Normal
-0.8
478
Normal
-0.8
332
Normal
-0.8
514
Normal
-0.8
786
Normal
-0.8
328
Normal
-0.8
824
Normal
-0.8
954
Normal
-0.8
416
Normal
-0.8
1026
Normal
-0.9
918
Normal
-0.9
873
Tumor
-0.9
546
Normal
-0.9
284
Normal
-0.9
721
Tumor
-0.9
756
Normal
-0.9
724
Normal
-0.9
857
Tumor
-0.9
191
Tumor
-0.9
852
Normal
-0.9
916
Normal
-0.9
858
Normal
-0.9
912
Normal
-1.0
922
Normal
-1.0
727
Tumor
-1.0
524
Normal
-1.0
534
Normal
-1.1
698
Normal
-1.1
818
Normal
-1.1
665
Tumor
-1.1
1022
Normal
-1.1
982
Normal
-1.1
447
Tumor
-1.1
536
Normal
-1.1
494
Normal
-1.2
472
Normal
-1.2
926
Normal
-1.2
1044
Normal
-1.2
1046
Normal
-1.2
1016
Normal
-1.2
528
Normal
-1.3
968
Normal
-1.3
488
Normal
-1.3
1042
Normal
-1.4
882
Normal
-1.4
1032
Normal
-1.4
884
Normal
-1.4
484
Normal
-1.5
498
Normal
-1.6
462
Normal
-1.7
976
Normal
-1.7
984
Normal
-1.7
958
Normal
-1.7
964
Normal
-1.7
1045
Tumor
-1.9
978
Normal
-2.0
1014
Normal
-2.0
481
Tumor
-2.7
482
Normal
-3.4
716
Normal
-6.4
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
