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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC25A10 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
79.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
309.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
274.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
233.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
212.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
208.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
203.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
192.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
187.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
177.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
176.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
170.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
168.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
168.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
164.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
163.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
162.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
160.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
160.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
158.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
157.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
156.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
156.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
154.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
154.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
154.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
154.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
154.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
154.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
153.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
153.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
152.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
147.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
142.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
142.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
137.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
135.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
132.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
131.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
130.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
129.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
128.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
127.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
127.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
127.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
126.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
125.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
125.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
124.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
124.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
124.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
122.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
122.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
122.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
122.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
121.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
121.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
121.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
120.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
120.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
120.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
118.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
115.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
115.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
114.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
114.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
113.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
112.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
111.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
110.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
110.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
110.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
109.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
109.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
109.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
108.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
108.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
108.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
108.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
107.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
106.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
106.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
105.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
105.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
105.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
105.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
104.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
104.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
104.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
103.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
103.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
102.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
101.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
100.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
100.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
100.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
99.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
99.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
98.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
98.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
97.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
96.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
96.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
96.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
96.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
96.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
96.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
96.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
96.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
95.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
95.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
94.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
94.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
94.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
94.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
94.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
93.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
93.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
92.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
92.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
91.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
91.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
91.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
91.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
90.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
89.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
89.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
88.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
87.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
86.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
86.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
86.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
86.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
85.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
85.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
85.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
85.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
84.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
84.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
83.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
83.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
83.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
82.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
82.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
82.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
82.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
81.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
81.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
80.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
80.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
80.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
79.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
79.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
79.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
79.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
78.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
78.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
78.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
77.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
77.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
77.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
77.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
77.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
77.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
76.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
76.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
75.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
75.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
74.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
74.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
74.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
74.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
74.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
73.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
73.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
73.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
72.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
71.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
71.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
71.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
70.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
70.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
70.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
69.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
69.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
69.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
69.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
68.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
68.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
67.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
67.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
67.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
67.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
66.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
66.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
66.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
66.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
65.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
65.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
65.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
65.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
64.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
64.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
63.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
63.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
63.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
62.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
62.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
62.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
62.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
61.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
60.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
60.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
60.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
60.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
60.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
60.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
59.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
59.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
59.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
59.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
59.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
59.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
59.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
59.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
58.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
58.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
58.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
58.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
58.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
58.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
57.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
57.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
57.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
57.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
57.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
57.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
56.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
56.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
56.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
55.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
55.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
55.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
54.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
54.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
54.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
54.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
54.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
53.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
53.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
53.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
53.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
52.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
52.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
52.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
52.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
52.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
52.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
51.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
51.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
50.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
50.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
50.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
50.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
50.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
50.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
49.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
49.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
49.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
48.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
48.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
48.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
48.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
48.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
48.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
47.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
47.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
47.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
47.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
47.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
46.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
46.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
46.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
46.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
45.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
45.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
45.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
44.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
44.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
44.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
43.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
43.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
43.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
43.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
42.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
42.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
42.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
42.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
42.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
41.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
41.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
40.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
40.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
40.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
39.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
39.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
39.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
39.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
39.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
39.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
39.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
38.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
38.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
38.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
38.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
37.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
37.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
36.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
36.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
36.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
36.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
35.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
35.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
34.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
33.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
33.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
32.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
32.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
32.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
32.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
31.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
31.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
31.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
30.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
30.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
30.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
30.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
29.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
29.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
29.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
29.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
28.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
28.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
28.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
27.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
27.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
27.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
27.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
26.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
24.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
24.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
24.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
23.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
22.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
22.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
21.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
21.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
20.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
19.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
19.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
18.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
9.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC25A10 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
56.1
Number of samples
231
Samples
Sample
Description
TPM
DO45125
0 years, male, NA, stage:3, alive, 1680 days
385.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
330.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
218.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
184.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
174.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
156.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
156.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
144.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
143.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
142.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
130.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
128.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
125.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
124.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
118.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
117.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
116.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
114.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
112.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
111.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
102.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
100.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
99.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
98.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
98.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
97.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
97.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
95.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
95.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
92.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
91.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
91.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
89.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
88.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
88.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
87.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
85.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
84.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
84.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
82.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
82.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
81.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
80.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
80.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
78.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
78.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
76.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
75.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
74.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
73.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
72.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
71.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
71.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
68.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
68.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
67.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
67.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
66.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
66.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
66.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
65.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
65.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
65.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
65.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
65.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
63.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
63.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
62.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
61.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
60.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
60.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
60.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
59.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
58.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
57.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
57.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
57.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
56.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
56.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
56.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
55.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
55.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
55.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
55.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
55.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
54.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
54.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
54.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
54.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
53.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
53.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
52.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
52.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
52.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
51.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
51.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
51.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
51.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
50.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
50.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
50.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
50.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
50.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
50.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
50.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
49.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
49.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
49.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
49.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
48.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
48.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
48.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
48.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
47.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
46.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
46.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
46.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
45.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
45.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
45.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
44.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
44.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
44.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
44.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
44.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
44.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
43.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
43.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
43.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
43.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
43.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
42.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
42.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
42.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
42.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
41.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
41.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
41.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
40.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
40.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
40.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
39.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
39.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
38.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
38.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
38.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
38.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
38.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
37.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
37.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
37.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
37.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
36.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
35.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
35.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
35.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
34.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
34.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
34.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
34.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
33.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
33.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
33.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
32.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
32.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
31.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
31.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
31.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
31.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
30.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
30.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
30.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
30.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
29.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
29.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
29.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
29.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
28.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
28.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
28.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
28.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
27.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
27.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
27.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
27.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
27.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
27.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
27.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
26.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
26.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
25.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
24.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
24.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
23.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
23.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
23.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
23.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
22.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
22.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
21.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
21.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
21.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
20.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
20.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
19.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
19.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
19.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
18.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
18.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
17.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
17.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
16.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
16.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
16.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
16.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
15.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
13.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
13.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
12.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
12.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
11.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
11.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
10.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
10.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
10.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
9.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
7.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
5.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
5.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
1.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
627
Tumor
1.7
1027
Tumor
1.3
465
Tumor
1.1
615
Tumor
1.0
423
Tumor
1.0
981
Tumor
0.9
365
Tumor
0.9
925
Tumor
0.9
513
Tumor
0.8
436
Normal
0.8
361
Tumor
0.7
435
Tumor
0.7
433
Tumor
0.6
741
Tumor
0.6
298
Normal
0.6
452
Normal
0.6
867
Tumor
0.6
137
Tumor
0.6
428
Normal
0.6
863
Tumor
0.6
487
Tumor
0.5
777
Tumor
0.5
515
Tumor
0.5
915
Tumor
0.5
172
Normal
0.5
462
Normal
0.5
342
Normal
0.5
698
Normal
0.5
466
Normal
0.5
824
Normal
0.5
746
Normal
0.5
464
Normal
0.5
392
Normal
0.4
162
Normal
0.4
414
Normal
0.4
446
Normal
0.4
128
Normal
0.4
222
Normal
0.4
376
Normal
0.4
394
Normal
0.4
393
Tumor
0.4
911
Tumor
0.4
1026
Normal
0.4
878
Normal
0.4
451
Tumor
0.4
196
Normal
0.4
755
Tumor
0.4
111
Normal
0.4
477
Tumor
0.4
858
Normal
0.3
953
Tumor
0.3
648
Normal
0.3
745
Tumor
0.3
695
Tumor
0.3
964
Normal
0.3
432
Normal
0.3
357
Tumor
0.3
882
Normal
0.3
127
Tumor
0.3
635
Tumor
0.3
422
Normal
0.3
448
Normal
0.3
873
Tumor
0.3
533
Tumor
0.3
1045
Tumor
0.3
862
Normal
0.3
534
Normal
0.3
912
Normal
0.3
482
Normal
0.3
618
Normal
0.3
472
Normal
0.3
714
Normal
0.3
786
Normal
0.3
424
Normal
0.3
864
Normal
0.3
456
Normal
0.3
278
Normal
0.3
756
Normal
0.3
636
Normal
0.3
148
Normal
0.3
914
Normal
0.3
664
Normal
0.3
738
Normal
0.3
461
Tumor
0.3
426
Normal
0.3
411
Tumor
0.3
366
Normal
0.2
484
Normal
0.2
818
Normal
0.2
358
Normal
0.2
328
Normal
0.2
1041
Tumor
0.2
1046
Normal
0.2
744
Normal
0.2
564
Normal
0.2
816
Normal
0.2
396
Normal
0.2
938
Normal
0.2
388
Normal
0.2
874
Normal
0.2
481
Tumor
0.2
232
Normal
0.2
214
Normal
0.2
868
Normal
0.2
866
Normal
0.2
1016
Normal
0.2
412
Normal
0.2
258
Normal
0.2
356
Normal
0.2
271
Tumor
0.2
314
Normal
0.2
488
Normal
0.2
1022
Normal
0.2
944
Normal
0.2
186
Normal
0.2
982
Normal
0.2
218
Normal
0.1
327
Tumor
0.1
257
Tumor
0.1
1032
Normal
0.1
171
Tumor
0.1
138
Normal
0.1
642
Normal
0.1
722
Normal
0.1
132
Normal
0.1
663
Tumor
0.1
922
Normal
0.1
468
Normal
0.1
728
Normal
0.1
937
Tumor
0.1
142
Normal
0.1
344
Normal
0.1
785
Tumor
0.1
518
Normal
0.1
884
Normal
0.1
474
Normal
0.1
354
Normal
0.1
557
Tumor
0.1
563
Tumor
0.1
723
Tumor
0.1
957
Tumor
0.1
742
Normal
0.1
431
Tumor
0.1
386
Normal
0.1
368
Normal
0.1
352
Normal
0.1
685
Tumor
0.1
1025
Tumor
0.1
1043
Tumor
0.1
286
Normal
0.1
136
Normal
0.1
924
Normal
0.1
114
Normal
0.1
952
Normal
0.1
227
Tumor
0.0
546
Normal
0.0
112
Tumor
0.0
568
Normal
0.0
976
Normal
0.0
141
Tumor
0.0
416
Normal
0.0
737
Tumor
0.0
1042
Normal
0.0
312
Normal
0.0
628
Normal
0.0
616
Normal
0.0
554
Normal
0.0
262
Normal
0.0
272
Normal
0.0
861
Tumor
0.0
1028
Normal
0.0
553
Tumor
0.0
483
Tumor
0.0
332
Normal
0.0
341
Tumor
0.0
146
Normal
0.0
124
Normal
0.0
1014
Normal
0.0
666
Normal
0.0
362
Normal
0.0
364
Normal
0.0
572
Normal
-0.1
968
Normal
-0.1
571
Tumor
-0.1
267
Tumor
-0.1
123
Tumor
-0.1
528
Normal
-0.1
913
Tumor
-0.1
966
Normal
-0.1
696
Normal
-0.1
443
Tumor
-0.1
228
Normal
-0.1
958
Normal
-0.1
353
Tumor
-0.1
662
Normal
-0.1
434
Normal
-0.1
956
Normal
-0.1
716
Normal
-0.1
574
Normal
-0.1
918
Normal
-0.1
926
Normal
-0.1
686
Normal
-0.1
1013
Tumor
-0.1
727
Tumor
-0.1
261
Tumor
-0.1
857
Tumor
-0.1
883
Tumor
-0.1
494
Normal
-0.1
921
Tumor
-0.1
126
Normal
-0.2
713
Tumor
-0.2
955
Tumor
-0.2
1044
Normal
-0.2
558
Normal
-0.2
526
Normal
-0.2
852
Normal
-0.2
778
Normal
-0.2
978
Normal
-0.2
161
Tumor
-0.2
491
Tumor
-0.2
387
Tumor
-0.2
284
Normal
-0.2
516
Normal
-0.2
195
Tumor
-0.2
497
Tumor
-0.3
212
Normal
-0.3
421
Tumor
-0.3
865
Tumor
-0.3
445
Tumor
-0.3
313
Tumor
-0.3
525
Tumor
-0.3
954
Normal
-0.3
455
Tumor
-0.3
444
Normal
-0.3
231
Tumor
-0.3
188
Normal
-0.3
514
Normal
-0.3
527
Tumor
-0.3
977
Tumor
-0.3
984
Normal
-0.3
1015
Tumor
-0.4
351
Tumor
-0.4
517
Tumor
-0.4
268
Normal
-0.4
916
Normal
-0.4
384
Normal
-0.4
473
Tumor
-0.4
823
Tumor
-0.4
743
Tumor
-0.4
923
Tumor
-0.4
567
Tumor
-0.4
147
Tumor
-0.4
297
Tumor
-0.4
478
Normal
-0.4
145
Tumor
-0.5
113
Tumor
-0.5
383
Tumor
-0.5
367
Tumor
-0.5
573
Tumor
-0.5
277
Tumor
-0.5
672
Normal
-0.5
538
Normal
-0.5
187
Tumor
-0.5
355
Tumor
-0.5
217
Tumor
-0.5
224
Normal
-0.5
1021
Tumor
-0.5
391
Tumor
-0.5
493
Tumor
-0.5
877
Tumor
-0.5
185
Tumor
-0.5
375
Tumor
-0.6
492
Normal
-0.6
647
Tumor
-0.6
221
Tumor
-0.6
191
Tumor
-0.6
213
Tumor
-0.6
223
Tumor
-0.6
641
Tumor
-0.6
665
Tumor
-0.6
415
Tumor
-0.6
125
Tumor
-0.6
963
Tumor
-0.7
537
Tumor
-0.7
721
Tumor
-0.7
363
Tumor
-0.7
192
Normal
-0.7
498
Normal
-0.7
815
Tumor
-0.7
1031
Tumor
-0.7
427
Tumor
-0.7
413
Tumor
-0.7
471
Tumor
-0.7
814
Normal
-0.7
617
Tumor
-0.7
523
Tumor
-0.7
524
Normal
-0.7
967
Tumor
-0.7
467
Tumor
-0.7
463
Tumor
-0.7
425
Tumor
-0.7
395
Tumor
-0.8
881
Tumor
-0.8
951
Tumor
-0.8
813
Tumor
-0.8
715
Tumor
-0.8
343
Tumor
-0.8
965
Tumor
-0.8
536
Normal
-0.8
135
Tumor
-1.0
447
Tumor
-1.0
975
Tumor
-1.0
331
Tumor
-1.0
671
Tumor
-1.0
285
Tumor
-1.0
697
Tumor
-1.1
851
Tumor
-1.1
131
Tumor
-1.2
385
Tumor
-1.2
283
Tumor
-1.2
943
Tumor
-1.2
983
Tumor
-1.2
817
Tumor
-1.2
724
Normal
-1.2
917
Tumor
-1.3
545
Tumor
-1.3
661
Tumor
-1.3
311
Tumor
-1.3
535
Tumor
-1.6
211
Tumor
-1.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
