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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CADM1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
37.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
199.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
186.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
170.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
161.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
133.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
132.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
124.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
123.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
110.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
109.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
106.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
105.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
103.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
102.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
97.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
97.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
95.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
93.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
89.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
87.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
87.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
85.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
83.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
83.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
83.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
80.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
80.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
79.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
79.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
78.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
77.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
77.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
76.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
75.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
74.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
73.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
72.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
72.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
72.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
71.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
71.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
68.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
67.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
67.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
67.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
66.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
66.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
66.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
66.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
65.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
65.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
64.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
64.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
64.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
63.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
63.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
63.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
63.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
63.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
63.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
63.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
61.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
60.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
60.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
60.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
60.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
59.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
59.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
58.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
58.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
58.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
57.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
57.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
57.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
56.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
56.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
56.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
55.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
54.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
54.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
53.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
52.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
52.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
51.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
51.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
51.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
51.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
50.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
49.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
49.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
49.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
48.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
48.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
48.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
48.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
47.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
47.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
47.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
47.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
46.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
46.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
46.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
46.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
46.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
46.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
46.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
45.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
45.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
44.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
43.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
43.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
43.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
43.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
43.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
43.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
42.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
42.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
42.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
42.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
42.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
42.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
42.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
42.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
41.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
41.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
41.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
41.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
40.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
40.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
40.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
40.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
40.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
40.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
40.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
40.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
39.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
39.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
39.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
39.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
39.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
39.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
39.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
38.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
38.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
38.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
38.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
37.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
37.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
37.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
37.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
37.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
36.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
36.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
36.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
36.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
36.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
35.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
35.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
35.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
35.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
35.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
34.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
34.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
33.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
33.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
33.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
33.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
33.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
33.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
32.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
32.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
32.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
32.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
31.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
31.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
31.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
31.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
31.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
30.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
30.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
30.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
30.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
30.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
29.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
29.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
29.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
29.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
29.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
29.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
29.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
29.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
28.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
28.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
28.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
28.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
27.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
27.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
26.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
26.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
26.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
26.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
26.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
26.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
26.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
25.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
25.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
25.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
25.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
25.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
25.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
25.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
25.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
24.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
24.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
24.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
24.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
24.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
24.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
24.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
24.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
24.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
23.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
23.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
23.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
23.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
23.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
23.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
23.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
23.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
22.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
22.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
22.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
22.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
22.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
22.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
22.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
22.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
22.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
21.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
21.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
21.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
20.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
20.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
20.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
20.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
20.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
20.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
20.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
20.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
20.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
20.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
19.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
19.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
19.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
19.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
19.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
19.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
18.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
18.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
18.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
17.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
17.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
17.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
17.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
17.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
17.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
16.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
16.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
16.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
16.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
15.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
15.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
15.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
15.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
15.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
15.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
14.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
14.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
14.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
14.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
14.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
14.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
14.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
14.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
13.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
13.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
13.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
13.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
13.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
12.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
12.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
12.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
12.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
12.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
12.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
12.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
11.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
11.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
11.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
11.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
11.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
11.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
11.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
11.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
11.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
11.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
10.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
10.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
10.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
10.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
10.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
10.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
10.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
10.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
10.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
9.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
9.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
9.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
9.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
9.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
9.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
8.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
8.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
8.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
8.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
8.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
8.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
8.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
8.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
7.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
7.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
7.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
7.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
7.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
6.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
6.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
6.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
6.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
6.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
6.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
5.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
5.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
5.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
3.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
3.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CADM1 is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
21.9
Number of samples
231
Samples
Sample
Description
TPM
DO45121
0 years, male, NA, stage:3, alive, 1530 days
99.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
72.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
63.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
63.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
62.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
60.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
60.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
59.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
59.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
55.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
54.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
54.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
53.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
51.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
50.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
50.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
50.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
48.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
47.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
47.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
46.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
44.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
44.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
43.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
43.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
41.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
41.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
41.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
41.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
40.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
39.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
39.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
38.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
38.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
38.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
38.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
38.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
37.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
37.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
36.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
36.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
34.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
33.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
33.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
33.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
33.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
32.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
32.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
32.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
32.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
31.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
31.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
30.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
30.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
30.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
30.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
29.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
29.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
29.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
28.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
28.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
28.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
28.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
27.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
27.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
27.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
27.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
27.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
26.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
26.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
26.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
26.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
26.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
25.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
25.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
25.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
25.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
25.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
24.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
24.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
24.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
24.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
24.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
24.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
24.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
24.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
23.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
23.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
23.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
22.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
22.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
21.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
21.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
21.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
21.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
21.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
21.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
20.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
20.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
20.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
20.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
20.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
20.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
20.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
20.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
20.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
20.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
19.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
19.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
19.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
19.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
19.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
19.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
19.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
19.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
18.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
18.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
18.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
18.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
18.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
17.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
17.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
17.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
17.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
17.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
17.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
16.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
16.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
16.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
16.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
15.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
15.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
15.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
15.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
15.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
14.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
14.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
14.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
14.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
14.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
14.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
13.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
13.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
13.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
13.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
13.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
13.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
13.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
13.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
13.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
13.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
13.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
12.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
12.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
12.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
12.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
12.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
12.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
12.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
11.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
11.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
11.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
11.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
11.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
11.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
10.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
10.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
10.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
10.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
10.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
10.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
9.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
9.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
9.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
9.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
9.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
9.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
9.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
9.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
9.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
9.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
9.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
8.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
8.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
8.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
8.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
8.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
8.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
8.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
8.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
8.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
7.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
7.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
7.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
7.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
6.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
6.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
6.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
5.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
5.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
5.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
5.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
5.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
4.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
4.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
4.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
4.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
4.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
4.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
3.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
3.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
3.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
3.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
3.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
3.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
3.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
3.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
2.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
2.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
2.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
431
Tumor
1.4
777
Tumor
1.3
1021
Tumor
1.2
445
Tumor
1.2
341
Tumor
1.2
227
Tumor
1.1
361
Tumor
1.1
741
Tumor
1.1
387
Tumor
1.0
257
Tumor
1.0
737
Tumor
1.0
147
Tumor
1.0
137
Tumor
1.0
713
Tumor
0.9
487
Tumor
0.9
615
Tumor
0.8
357
Tumor
0.8
571
Tumor
0.8
421
Tumor
0.8
443
Tumor
0.8
745
Tumor
0.8
353
Tumor
0.8
951
Tumor
0.8
863
Tumor
0.7
915
Tumor
0.7
755
Tumor
0.7
977
Tumor
0.7
647
Tumor
0.7
477
Tumor
0.7
185
Tumor
0.7
1043
Tumor
0.7
473
Tumor
0.6
867
Tumor
0.6
465
Tumor
0.6
563
Tumor
0.6
697
Tumor
0.6
883
Tumor
0.6
1027
Tumor
0.6
471
Tumor
0.6
1041
Tumor
0.6
161
Tumor
0.6
423
Tumor
0.5
557
Tumor
0.5
171
Tumor
0.4
627
Tumor
0.4
141
Tumor
0.4
127
Tumor
0.4
433
Tumor
0.4
533
Tumor
0.4
125
Tumor
0.4
661
Tumor
0.3
727
Tumor
0.3
355
Tumor
0.3
363
Tumor
0.3
911
Tumor
0.3
1013
Tumor
0.3
277
Tumor
0.3
455
Tumor
0.2
327
Tumor
0.2
463
Tumor
0.2
493
Tumor
0.2
483
Tumor
0.2
955
Tumor
0.2
923
Tumor
0.2
513
Tumor
0.2
1045
Tumor
0.2
451
Tumor
0.2
313
Tumor
0.2
425
Tumor
0.2
112
Tumor
0.2
877
Tumor
0.2
435
Tumor
0.2
635
Tumor
0.2
391
Tumor
0.2
131
Tumor
0.1
481
Tumor
0.1
231
Tumor
0.1
861
Tumor
0.1
925
Tumor
0.1
963
Tumor
0.1
145
Tumor
0.1
393
Tumor
0.1
527
Tumor
0.1
285
Tumor
0.1
367
Tumor
0.1
981
Tumor
0.1
427
Tumor
0.1
523
Tumor
0.1
913
Tumor
0.1
721
Tumor
0.1
714
Normal
0.1
813
Tumor
0.1
383
Tumor
0.1
617
Tumor
0.1
868
Normal
0.0
123
Tumor
0.0
1044
Normal
0.0
268
Normal
0.0
965
Tumor
0.0
396
Normal
0.0
415
Tumor
0.0
564
Normal
0.0
444
Normal
0.0
823
Tumor
0.0
874
Normal
0.0
343
Tumor
0.0
954
Normal
0.0
461
Tumor
0.0
126
Normal
0.0
261
Tumor
0.0
616
Normal
-0.1
857
Tumor
-0.1
375
Tumor
-0.1
816
Normal
-0.1
258
Normal
-0.1
785
Tumor
-0.1
568
Normal
-0.1
1028
Normal
-0.1
328
Normal
-0.1
484
Normal
-0.1
916
Normal
-0.1
114
Normal
-0.1
943
Tumor
-0.1
365
Tumor
-0.1
218
Normal
-0.1
817
Tumor
-0.1
814
Normal
-0.1
878
Normal
-0.1
866
Normal
-0.1
386
Normal
-0.1
515
Tumor
-0.1
968
Normal
-0.1
411
Tumor
-0.1
385
Tumor
-0.1
641
Tumor
-0.1
517
Tumor
-0.2
298
Normal
-0.2
416
Normal
-0.2
162
Normal
-0.2
715
Tumor
-0.2
474
Normal
-0.2
967
Tumor
-0.2
526
Normal
-0.2
918
Normal
-0.2
851
Tumor
-0.2
188
Normal
-0.2
497
Tumor
-0.2
478
Normal
-0.2
436
Normal
-0.2
818
Normal
-0.2
135
Tumor
-0.2
366
Normal
-0.2
448
Normal
-0.2
113
Tumor
-0.2
1014
Normal
-0.2
214
Normal
-0.2
128
Normal
-0.2
138
Normal
-0.2
384
Normal
-0.2
376
Normal
-0.2
283
Tumor
-0.2
364
Normal
-0.2
696
Normal
-0.2
267
Tumor
-0.2
944
Normal
-0.2
262
Normal
-0.2
746
Normal
-0.2
388
Normal
-0.2
232
Normal
-0.2
498
Normal
-0.2
824
Normal
-0.3
862
Normal
-0.3
392
Normal
-0.3
426
Normal
-0.3
136
Normal
-0.3
472
Normal
-0.3
422
Normal
-0.3
572
Normal
-0.3
187
Tumor
-0.3
284
Normal
-0.3
538
Normal
-0.3
432
Normal
-0.3
356
Normal
-0.3
743
Tumor
-0.3
446
Normal
-0.3
628
Normal
-0.3
695
Tumor
-0.3
978
Normal
-0.3
434
Normal
-0.3
756
Normal
-0.3
394
Normal
-0.3
111
Normal
-0.3
686
Normal
-0.3
574
Normal
-0.3
1046
Normal
-0.3
1031
Tumor
-0.3
873
Tumor
-0.3
222
Normal
-0.3
132
Normal
-0.3
662
Normal
-0.3
1026
Normal
-0.3
344
Normal
-0.3
213
Tumor
-0.3
368
Normal
-0.3
482
Normal
-0.3
858
Normal
-0.3
492
Normal
-0.3
362
Normal
-0.3
648
Normal
-0.3
852
Normal
-0.3
192
Normal
-0.3
494
Normal
-0.3
342
Normal
-0.3
297
Tumor
-0.3
1042
Normal
-0.3
924
Normal
-0.3
516
Normal
-0.3
884
Normal
-0.4
728
Normal
-0.4
558
Normal
-0.4
148
Normal
-0.4
518
Normal
-0.4
466
Normal
-0.4
914
Normal
-0.4
975
Tumor
-0.4
332
Normal
-0.4
738
Normal
-0.4
685
Tumor
-0.4
922
Normal
-0.4
312
Normal
-0.4
278
Normal
-0.4
464
Normal
-0.4
414
Normal
-0.4
352
Normal
-0.4
314
Normal
-0.4
716
Normal
-0.4
217
Tumor
-0.4
671
Tumor
-0.4
882
Normal
-0.4
524
Normal
-0.4
665
Tumor
-0.4
124
Normal
-0.4
272
Normal
-0.4
554
Normal
-0.4
744
Normal
-0.4
664
Normal
-0.4
1016
Normal
-0.4
228
Normal
-0.4
172
Normal
-0.4
953
Tumor
-0.4
698
Normal
-0.4
351
Tumor
-0.4
666
Normal
-0.4
488
Normal
-0.4
331
Tumor
-0.4
956
Normal
-0.4
286
Normal
-0.4
786
Normal
-0.4
1022
Normal
-0.4
926
Normal
-0.4
447
Tumor
-0.4
567
Tumor
-0.4
546
Normal
-0.4
1025
Tumor
-0.4
537
Tumor
-0.4
514
Normal
-0.4
195
Tumor
-0.4
354
Normal
-0.4
722
Normal
-0.4
642
Normal
-0.4
212
Normal
-0.4
428
Normal
-0.4
462
Normal
-0.4
982
Normal
-0.4
966
Normal
-0.5
964
Normal
-0.5
778
Normal
-0.5
864
Normal
-0.5
146
Normal
-0.5
456
Normal
-0.5
952
Normal
-0.5
618
Normal
-0.5
672
Normal
-0.5
742
Normal
-0.5
865
Tumor
-0.5
424
Normal
-0.5
468
Normal
-0.5
984
Normal
-0.5
395
Tumor
-0.5
912
Normal
-0.5
358
Normal
-0.5
142
Normal
-0.5
191
Tumor
-0.5
976
Normal
-0.5
958
Normal
-0.5
636
Normal
-0.5
452
Normal
-0.6
938
Normal
-0.6
1032
Normal
-0.6
196
Normal
-0.6
224
Normal
-0.6
723
Tumor
-0.6
412
Normal
-0.6
413
Tumor
-0.6
553
Tumor
-0.6
534
Normal
-0.6
957
Tumor
-0.7
545
Tumor
-0.7
186
Normal
-0.7
881
Tumor
-0.7
937
Tumor
-0.7
536
Normal
-0.7
223
Tumor
-0.7
663
Tumor
-0.7
271
Tumor
-0.7
221
Tumor
-0.7
528
Normal
-0.8
1015
Tumor
-0.9
983
Tumor
-0.9
311
Tumor
-1.0
211
Tumor
-1.0
525
Tumor
-1.0
724
Normal
-1.0
491
Tumor
-1.2
467
Tumor
-1.3
917
Tumor
-1.3
535
Tumor
-1.3
921
Tumor
-1.3
573
Tumor
-1.4
815
Tumor
-1.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
