MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:36.9 nTPM
HPA Brain:62.8 nTPM
GTEx:36.9 nTPM
FANTOM5:54.0 Scaled Tags Per Million
Pig:20.8 nTPM
Mouse:49.0 nTPM
Allen mouse:5.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 62.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 50.0
2586 Male, age 75, left hemisphere 84.0
2828 Female, age 72, unknown 55.9
1833 Male, age 53, unknown 48.9
2411 Female, age 72, unknown 48.6
2666 Male, age 74, left hemisphere 48.1
1870 Female, age 42, unknown 47.7
1830 Male, age 51, unknown 47.3
1827 Male, age 72, unknown 47.2
2019 Male, age 18, unknown 42.7
2219 Male, age 76, both hemispheres 29.4
Dorsal raphe nucleus
nTPM: 56.9
2016 Female, age 72, unknown 64.3
2047 Male, age 72, unknown 63.5
1828 Male, age 53, unknown 58.4
2298 Female, age 72, unknown 56.4
2750 Male, age 76, both hemispheres 42.1
Inferior colliculus
nTPM: 48.8
1890 Male, age 53, unknown 50.7
2849 Male, age 72, unknown 50.1
1848 Female, age 42, unknown 47.6
2097 Female, age 72, unknown 46.8
Median raphe nucleus
nTPM: 41.6
2220 Male, age 76, midline 41.6
Periaquaductal grey, anterior
nTPM: 51.0
1795 Male, age 51, unknown 54.4
1947 Male, age 18, unknown 50.3
2502 Female, age 75, unknown 48.2
Periaquaductal grey, dorsal
nTPM: 57.9
2850 Male, age 76, both hemispheres 66.9
1840 Male, age 53, unknown 57.1
1831 Male, age 72, unknown 54.7
2464 Female, age 72, unknown 53.0
Periaquaductal grey, lateral
nTPM: 62.8
2140 Male, age 76, both hemispheres 75.8
2053 Male, age 18, unknown 58.9
2272 Male, age 74, both hemispheres 53.6
Pretectal area
nTPM: 43.7
2825 Male, age 18, unknown 57.8
2316 Male, age 76, right hemisphere 51.2
2273 Male, age 74, both hemispheres 50.2
2407 Male, age 75, both hemispheres 49.1
2224 Female, age 72, unknown 48.2
1815 Male, age 53, unknown 41.4
2667 Female, age 75, unknown 41.2
1944 Female, age 72, unknown 41.1
1817 Female, age 42, unknown 35.1
1816 Male, age 51, unknown 32.8
2007 Male, age 72, unknown 32.2
Red nucleus
nTPM: 51.3
2725 Female, age 75, unknown 64.4
2588 Male, age 74, left hemisphere 53.9
2227 Male, age 72, unknown 52.7
2503 Female, age 72, unknown 52.4
1865 Male, age 51, unknown 51.6
1904 Male, age 53, unknown 51.0
2769 Male, age 72, unknown 50.9
1954 Female, age 42, unknown 50.6
1821 Female, age 72, unknown 50.1
2584 Male, age 75, left hemisphere 49.1
2823 Male, age 76, right hemisphere 48.3
2785 Male, age 18, unknown 40.7
Substantia nigra
nTPM: 57.3
1916 Female, age 42, unknown 77.6
2699 Male, age 18, unknown 75.9
1851 Male, age 51, unknown 64.7
2241 Male, age 72, unknown 59.9
2590 Female, age 75, unknown 56.3
1941 Male, age 53, unknown 50.7
2583 Male, age 75, right hemisphere 50.3
2665 Male, age 74, both hemispheres 48.5
2409 Female, age 72, unknown 46.7
1889 Female, age 72, unknown 42.3
Superior colliculus
nTPM: 44.6
2664 Male, age 75, both hemispheres 58.3
1995 Male, age 72, unknown 50.2
1796 Male, age 53, unknown 48.9
1839 Male, age 51, unknown 45.4
2587 Male, age 74, left hemisphere 44.5
1913 Female, age 42, unknown 43.7
2087 Female, age 72, unknown 42.2
2668 Female, age 75, unknown 38.4
1895 Male, age 76, right hemisphere 37.1
2261 Male, age 18, unknown 36.8
Ventral tegmental area
nTPM: 56.8
1915 Female, age 42, unknown 61.8
2223 Female, age 72, unknown 59.6
1942 Male, age 51, unknown 59.3
2410 Female, age 72, unknown 54.9
2021 Male, age 53, unknown 54.8
2218 Male, age 76, both hemispheres 50.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 36.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 36.9
Samples: 139

Max nTPM: 130.0
Min nTPM: 10.3
Std nTPM: 18.0
Median nTPM: 32.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 130.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 118.0
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 87.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 85.4
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 82.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 78.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 77.5
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 70.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 63.8
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 62.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 61.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 54.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 54.0
FF:10158-103A5 76 years, female 54.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 20.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 20.8
Samples: 4

Max nTPM: 24.2
Min nTPM: 14.4
Sample A Female 14.4
Sample B Female 21.0
Sample C Male 23.5
Sample D Male 24.2
Midbrain
nTPM: 18.5
Samples: 4

Max nTPM: 21.7
Min nTPM: 14.9
Sample A Female 21.7
Sample B Female 20.2
Sample C Male 17.2
Sample D Male 14.9
Periaqueductal gray
nTPM: 17.2
Samples: 3

Max nTPM: 19.5
Min nTPM: 15.9
Sample B Female 19.5
Sample C Male 16.3
Sample D Male 15.9
Superior colliculi
nTPM: 18.4
Samples: 4

Max nTPM: 22.3
Min nTPM: 14.9
Sample A Female 14.9
Sample B Female 22.3
Sample C Male 17.9
Sample D Male 18.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 49.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 49.0
Samples: 4

Max nTPM: 52.6
Min nTPM: 46.4
Sample A Male 48.7
Sample B Male 46.4
Sample C Female 48.3
Sample D Female 52.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 5.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.6
61002 Antisense, RP_040407_02_B05, Mouse strain C57BL/6J (56 days, male) 8.1
71724553 Antisense, RP_050927_04_H02, Mouse strain C57BL/6J (56 days, male) 3.1

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