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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
YBEY is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
74.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
58.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
58.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
56.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
55.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
51.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
48.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
48.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
47.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
46.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
45.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
41.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
40.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
40.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
39.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
39.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
38.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
38.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
38.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
38.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
37.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
37.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
37.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
36.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
36.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
35.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
35.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
35.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
35.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
35.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
34.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
34.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
34.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
34.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
33.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
33.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
33.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
32.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
32.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
32.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
32.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
32.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
31.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
31.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
31.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
31.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
30.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
30.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
30.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
29.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
29.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
29.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
29.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
29.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
29.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
29.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
28.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
28.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
28.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
28.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
28.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
28.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
28.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
28.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
28.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
27.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
27.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
27.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
27.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
27.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
27.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
27.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
27.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
26.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
26.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
26.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
26.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
26.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
26.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
26.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
25.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
25.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
25.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
25.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
25.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
25.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
25.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
25.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
25.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
25.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
25.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
24.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
24.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
24.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
24.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
24.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
24.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
24.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
24.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
24.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
24.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
24.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
24.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
24.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
24.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
23.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
23.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
23.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
23.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
23.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
23.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
23.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
23.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
23.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
23.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
23.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
22.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
22.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
22.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
22.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
22.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
22.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
22.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
22.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
22.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
21.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
21.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
21.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
21.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
21.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
21.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
21.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
21.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
21.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
20.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
20.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
20.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
20.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
20.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
20.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
20.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
20.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
20.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
20.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
20.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
19.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
19.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
19.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
19.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
19.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
19.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
19.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
19.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
19.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
19.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
19.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
19.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
18.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
18.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
18.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
18.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
18.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
18.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
18.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
18.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
18.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
18.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
18.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
18.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
18.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
18.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
18.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
18.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
18.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
17.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
17.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
17.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
17.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
17.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
17.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
17.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
17.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
17.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
17.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
16.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
16.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
16.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
16.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
16.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
16.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
16.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
16.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
16.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
16.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
16.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
16.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
16.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
16.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
16.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
16.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
16.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
16.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
15.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
15.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
15.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
15.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
15.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
15.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
15.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
15.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
15.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
15.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
15.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
15.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
15.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
15.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
15.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
15.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
15.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
15.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
15.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
15.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
15.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
15.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
15.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
15.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
15.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
14.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
14.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
14.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
14.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
14.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
14.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
14.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
14.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
14.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
14.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
14.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
14.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
14.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
14.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
14.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
14.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
14.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
13.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
13.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
13.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
13.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
13.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
13.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
13.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
13.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
13.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
13.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
12.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
12.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
12.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
12.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
12.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
12.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
12.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
12.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
12.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
12.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
12.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
12.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
12.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
12.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
11.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
11.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
11.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
11.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
11.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
11.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
11.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
11.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
11.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
11.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
11.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
11.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
11.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
11.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
11.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
10.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
10.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
10.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
10.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
10.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
10.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
10.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
10.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
10.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
10.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
10.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
10.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
10.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
10.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
10.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
10.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
10.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
10.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
10.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
9.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
9.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
9.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
9.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
9.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
9.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
9.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
9.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
9.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
9.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
9.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
9.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
9.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
8.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
8.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
8.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
8.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
7.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
7.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
7.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
7.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
7.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
7.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
7.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
7.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
7.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
7.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
7.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
6.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
5.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
5.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
5.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
5.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
4.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
4.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
4.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
4.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
4.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
4.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
3.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
3.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
2.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
2.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
YBEY is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.2
Number of samples
231
Samples
Sample
Description
TPM
DO45289
0 years, female, NA, stage:3, alive, 360 days
38.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
34.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
28.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
28.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
25.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
24.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
24.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
23.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
22.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
21.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
21.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
21.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
20.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
20.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
20.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
20.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
19.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
19.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
19.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
19.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
19.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
19.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
19.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
18.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
18.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
17.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
17.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
17.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
17.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
16.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
16.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
16.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
16.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
16.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
15.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
15.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
15.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
15.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
15.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
14.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
14.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
14.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
14.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
14.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
14.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
14.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
14.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
13.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
13.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
13.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
13.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
13.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
12.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
12.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
12.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
12.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
12.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
12.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
12.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
12.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
12.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
12.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
12.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
11.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
11.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
11.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
11.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
11.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
11.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
11.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
11.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
11.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
11.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
11.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
11.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
11.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
11.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
11.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
11.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
11.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
11.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
11.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
11.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
11.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
10.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
10.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
10.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
10.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
10.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
10.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
10.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
10.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
10.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
10.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
10.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
10.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
10.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
9.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
9.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
9.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
9.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
9.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
9.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
9.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
9.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
9.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
9.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
9.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
9.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
8.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
8.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
8.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
8.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
8.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
8.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
8.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
8.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
8.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
8.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
8.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
8.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
8.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
8.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
8.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
8.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
8.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
8.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
8.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
8.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
8.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
8.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
8.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
8.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
7.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
7.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
7.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
7.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
7.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
7.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
7.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
7.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
7.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
7.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
7.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
7.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
7.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
7.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
7.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
7.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
7.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
7.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
7.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
6.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
6.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
6.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
6.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
6.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
6.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
6.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
6.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
6.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
6.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
6.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
5.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
5.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
5.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
5.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
5.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
5.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
5.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
5.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
5.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
5.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
5.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
5.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
5.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
5.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
5.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
4.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
4.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
4.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
4.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
4.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
4.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
4.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
4.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
4.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
4.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
4.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
4.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
4.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
4.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
4.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
4.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
4.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
4.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
4.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
3.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
3.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
3.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
3.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
3.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
3.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
3.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
3.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
3.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
3.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
3.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
2.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
2.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
2.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
2.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
2.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
1.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
1.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1027
Tumor
2.1
567
Tumor
2.0
391
Tumor
1.9
815
Tumor
1.6
627
Tumor
1.6
615
Tumor
1.6
813
Tumor
1.4
537
Tumor
1.4
427
Tumor
1.3
953
Tumor
1.3
661
Tumor
1.2
665
Tumor
1.2
527
Tumor
1.2
967
Tumor
1.1
737
Tumor
1.1
191
Tumor
1.0
411
Tumor
1.0
863
Tumor
1.0
365
Tumor
0.9
477
Tumor
0.9
983
Tumor
0.9
443
Tumor
0.9
557
Tumor
0.9
525
Tumor
0.9
1031
Tumor
0.9
685
Tumor
0.8
387
Tumor
0.8
481
Tumor
0.8
363
Tumor
0.8
357
Tumor
0.7
285
Tumor
0.7
911
Tumor
0.7
221
Tumor
0.7
383
Tumor
0.7
1043
Tumor
0.7
257
Tumor
0.6
937
Tumor
0.6
571
Tumor
0.6
213
Tumor
0.6
715
Tumor
0.6
113
Tumor
0.6
713
Tumor
0.6
951
Tumor
0.6
981
Tumor
0.6
393
Tumor
0.6
517
Tumor
0.6
513
Tumor
0.6
573
Tumor
0.5
535
Tumor
0.5
413
Tumor
0.5
267
Tumor
0.5
471
Tumor
0.5
814
Normal
0.5
743
Tumor
0.5
957
Tumor
0.5
112
Tumor
0.5
851
Tumor
0.5
641
Tumor
0.5
865
Tumor
0.4
277
Tumor
0.4
493
Tumor
0.4
616
Normal
0.4
327
Tumor
0.4
965
Tumor
0.4
1045
Tumor
0.4
724
Normal
0.4
533
Tumor
0.4
857
Tumor
0.4
451
Tumor
0.4
425
Tumor
0.3
361
Tumor
0.3
311
Tumor
0.3
463
Tumor
0.3
342
Normal
0.3
421
Tumor
0.3
636
Normal
0.3
141
Tumor
0.3
618
Normal
0.3
137
Tumor
0.2
297
Tumor
0.2
1028
Normal
0.2
873
Tumor
0.2
231
Tumor
0.2
745
Tumor
0.2
975
Tumor
0.2
227
Tumor
0.2
523
Tumor
0.2
195
Tumor
0.2
883
Tumor
0.2
376
Normal
0.2
1015
Tumor
0.2
697
Tumor
0.2
423
Tumor
0.2
955
Tumor
0.1
353
Tumor
0.1
331
Tumor
0.1
877
Tumor
0.1
222
Normal
0.1
214
Normal
0.1
568
Normal
0.1
1041
Tumor
0.1
283
Tumor
0.1
482
Normal
0.1
223
Tumor
0.1
721
Tumor
0.1
261
Tumor
0.1
364
Normal
0.1
356
Normal
0.1
635
Tumor
0.1
355
Tumor
0.1
917
Tumor
0.1
314
Normal
0.1
1032
Normal
0.0
332
Normal
0.0
663
Tumor
0.0
392
Normal
0.0
696
Normal
0.0
433
Tumor
0.0
395
Tumor
0.0
147
Tumor
0.0
884
Normal
0.0
642
Normal
0.0
131
Tumor
0.0
938
Normal
0.0
695
Tumor
0.0
142
Normal
0.0
125
Tumor
0.0
664
Normal
0.0
686
Normal
0.0
515
Tumor
0.0
1026
Normal
0.0
483
Tumor
0.0
461
Tumor
0.0
823
Tumor
0.0
913
Tumor
0.0
921
Tumor
0.0
312
Normal
0.0
647
Tumor
-0.1
914
Normal
-0.1
912
Normal
-0.1
524
Normal
-0.1
428
Normal
-0.1
298
Normal
-0.1
785
Tumor
-0.1
617
Tumor
-0.1
341
Tumor
-0.1
271
Tumor
-0.1
145
Tumor
-0.1
192
Normal
-0.1
262
Normal
-0.1
1016
Normal
-0.1
135
Tumor
-0.1
268
Normal
-0.1
881
Tumor
-0.1
1025
Tumor
-0.1
727
Tumor
-0.1
744
Normal
-0.1
445
Tumor
-0.1
755
Tumor
-0.1
278
Normal
-0.1
786
Normal
-0.1
352
Normal
-0.1
328
Normal
-0.2
878
Normal
-0.2
977
Tumor
-0.2
487
Tumor
-0.2
714
Normal
-0.2
534
Normal
-0.2
628
Normal
-0.2
882
Normal
-0.2
518
Normal
-0.2
385
Tumor
-0.2
492
Normal
-0.2
494
Normal
-0.2
925
Tumor
-0.2
671
Tumor
-0.2
431
Tumor
-0.2
426
Normal
-0.2
716
Normal
-0.2
858
Normal
-0.2
563
Tumor
-0.2
358
Normal
-0.2
128
Normal
-0.3
384
Normal
-0.3
388
Normal
-0.3
472
Normal
-0.3
968
Normal
-0.3
424
Normal
-0.3
738
Normal
-0.3
196
Normal
-0.3
124
Normal
-0.3
526
Normal
-0.3
1046
Normal
-0.3
516
Normal
-0.3
1021
Tumor
-0.3
574
Normal
-0.3
284
Normal
-0.3
232
Normal
-0.3
923
Tumor
-0.3
954
Normal
-0.3
415
Tumor
-0.3
963
Tumor
-0.3
818
Normal
-0.3
916
Normal
-0.3
964
Normal
-0.3
187
Tumor
-0.3
1014
Normal
-0.3
146
Normal
-0.3
478
Normal
-0.3
414
Normal
-0.3
286
Normal
-0.3
367
Tumor
-0.3
394
Normal
-0.3
467
Tumor
-0.3
558
Normal
-0.3
741
Tumor
-0.3
722
Normal
-0.3
447
Tumor
-0.3
982
Normal
-0.4
416
Normal
-0.4
852
Normal
-0.4
344
Normal
-0.4
272
Normal
-0.4
1013
Tumor
-0.4
136
Normal
-0.4
123
Tumor
-0.4
396
Normal
-0.4
171
Tumor
-0.4
185
Tumor
-0.4
473
Tumor
-0.4
412
Normal
-0.4
514
Normal
-0.4
915
Tumor
-0.4
386
Normal
-0.4
648
Normal
-0.4
343
Tumor
-0.4
918
Normal
-0.4
666
Normal
-0.4
422
Normal
-0.4
127
Tumor
-0.4
824
Normal
-0.4
564
Normal
-0.4
723
Tumor
-0.4
546
Normal
-0.4
866
Normal
-0.4
132
Normal
-0.5
862
Normal
-0.5
161
Tumor
-0.5
448
Normal
-0.5
756
Normal
-0.5
354
Normal
-0.5
375
Tumor
-0.5
351
Tumor
-0.5
528
Normal
-0.5
742
Normal
-0.5
861
Tumor
-0.5
488
Normal
-0.5
114
Normal
-0.5
1042
Normal
-0.5
778
Normal
-0.5
956
Normal
-0.5
313
Tumor
-0.5
228
Normal
-0.5
572
Normal
-0.5
976
Normal
-0.5
728
Normal
-0.5
978
Normal
-0.5
922
Normal
-0.5
362
Normal
-0.5
366
Normal
-0.5
138
Normal
-0.5
816
Normal
-0.5
368
Normal
-0.5
218
Normal
-0.5
462
Normal
-0.5
538
Normal
-0.6
126
Normal
-0.6
952
Normal
-0.6
1044
Normal
-0.6
1022
Normal
-0.6
474
Normal
-0.6
258
Normal
-0.6
698
Normal
-0.6
111
Normal
-0.6
966
Normal
-0.6
868
Normal
-0.6
662
Normal
-0.6
958
Normal
-0.6
484
Normal
-0.6
465
Tumor
-0.6
224
Normal
-0.6
444
Normal
-0.6
172
Normal
-0.7
212
Normal
-0.7
926
Normal
-0.7
867
Tumor
-0.7
536
Normal
-0.7
434
Normal
-0.7
452
Normal
-0.7
162
Normal
-0.7
217
Tumor
-0.7
491
Tumor
-0.7
148
Normal
-0.7
464
Normal
-0.8
554
Normal
-0.8
497
Tumor
-0.8
432
Normal
-0.8
746
Normal
-0.8
466
Normal
-0.8
864
Normal
-0.9
924
Normal
-0.9
944
Normal
-0.9
186
Normal
-0.9
672
Normal
-0.9
498
Normal
-0.9
984
Normal
-0.9
777
Tumor
-0.9
188
Normal
-0.9
456
Normal
-1.0
211
Tumor
-1.0
446
Normal
-1.0
468
Normal
-1.0
874
Normal
-1.0
553
Tumor
-1.0
436
Normal
-1.1
943
Tumor
-1.1
455
Tumor
-1.3
817
Tumor
-1.3
545
Tumor
-1.5
435
Tumor
-1.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
