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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
C8orf33 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
18.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
96.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
62.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
61.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
57.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
54.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
51.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
49.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
46.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
46.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
45.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
45.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
44.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
43.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
42.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
41.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
40.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
40.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
40.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
40.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
40.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
38.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
38.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
37.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
37.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
36.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
36.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
36.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
35.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
35.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
34.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
33.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
33.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
33.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
33.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
33.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
32.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
32.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
32.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
31.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
31.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
31.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
31.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
30.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
30.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
30.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
30.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
30.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
29.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
29.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
29.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
29.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
29.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
29.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
29.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
29.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
28.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
28.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
28.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
28.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
28.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
27.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
26.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
26.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
25.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
25.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
25.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
25.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
25.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
25.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
25.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
25.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
25.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
25.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
25.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
24.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
24.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
24.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
24.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
24.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
24.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
24.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
24.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
24.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
24.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
23.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
23.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
23.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
23.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
22.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
22.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
22.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
22.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
22.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
22.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
22.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
21.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
21.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
21.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
21.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
21.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
21.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
21.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
21.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
21.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
21.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
20.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
20.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
20.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
20.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
20.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
20.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
20.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
20.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
19.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
19.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
19.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
19.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
19.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
19.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
19.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
19.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
19.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
19.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
19.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
19.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
19.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
18.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
18.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
18.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
18.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
18.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
18.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
18.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
18.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
18.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
18.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
18.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
18.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
18.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
18.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
18.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
18.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
18.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
18.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
18.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
18.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
18.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
18.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
17.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
17.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
17.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
17.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
17.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
17.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
17.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
17.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
17.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
17.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
17.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
17.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
17.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
17.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
17.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
16.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
16.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
16.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
16.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
16.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
16.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
16.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
16.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
16.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
16.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
16.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
15.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
15.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
15.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
15.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
15.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
15.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
15.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
15.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
15.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
15.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
15.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
14.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
14.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
14.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
14.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
14.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
14.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
14.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
14.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
14.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
14.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
14.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
14.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
14.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
14.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
14.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
13.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
13.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
13.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
13.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
13.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
13.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
13.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
13.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
13.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
13.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
13.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
13.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
13.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
13.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
13.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
13.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
13.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
13.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
13.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
13.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
13.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
13.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
12.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
12.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
12.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
12.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
12.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
12.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
12.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
12.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
12.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
12.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
12.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
12.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
12.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
12.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
12.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
12.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
12.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
12.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
12.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
12.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
12.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
12.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
11.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
11.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
11.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
11.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
11.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
11.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
11.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
11.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
11.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
11.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
11.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
11.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
11.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
11.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
11.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
11.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
11.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
11.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
11.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
10.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
10.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
10.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
10.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
10.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
10.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
10.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
10.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
10.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
10.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
10.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
10.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
10.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
10.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
10.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
10.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
10.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
10.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
9.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
9.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
9.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
9.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
9.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
9.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
9.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
9.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
9.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
9.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
9.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
9.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
9.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
9.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
9.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
9.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
9.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
9.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
9.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
9.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
9.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
8.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
8.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
8.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
8.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
8.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
8.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
8.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
8.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
8.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
8.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
8.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
8.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
7.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
7.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
7.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
7.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
7.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
7.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
7.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
7.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
7.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
7.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
7.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
6.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
6.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
6.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
5.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
4.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
C8orf33 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
21.5
Number of samples
231
Samples
Sample
Description
TPM
DO50811
0 years, male, NA, stage:1, alive, 450 days
112.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
88.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
80.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
75.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
72.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
61.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
59.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
58.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
58.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
57.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
57.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
54.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
53.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
50.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
48.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
47.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
44.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
42.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
41.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
38.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
38.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
38.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
38.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
37.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
36.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
36.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
35.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
35.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
34.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
34.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
34.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
33.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
33.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
33.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
33.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
32.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
32.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
31.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
31.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
31.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
31.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
31.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
30.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
30.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
30.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
30.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
29.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
29.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
28.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
28.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
28.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
27.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
27.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
26.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
26.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
26.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
26.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
26.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
26.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
26.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
25.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
25.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
25.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
25.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
25.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
25.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
25.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
24.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
24.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
24.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
24.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
24.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
24.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
24.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
23.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
23.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
23.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
23.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
22.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
22.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
22.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
22.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
22.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
21.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
21.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
21.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
21.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
21.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
21.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
20.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
20.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
20.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
20.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
20.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
20.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
20.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
20.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
20.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
20.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
19.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
19.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
19.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
18.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
18.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
18.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
18.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
18.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
18.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
18.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
18.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
18.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
18.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
18.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
18.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
18.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
18.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
18.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
17.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
17.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
17.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
17.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
17.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
17.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
17.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
17.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
17.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
17.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
17.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
16.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
16.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
16.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
16.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
16.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
16.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
16.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
15.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
15.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
15.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
15.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
15.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
15.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
14.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
14.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
14.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
14.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
14.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
14.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
14.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
13.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
13.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
13.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
13.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
13.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
13.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
13.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
13.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
13.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
12.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
12.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
12.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
12.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
12.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
12.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
12.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
12.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
12.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
12.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
12.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
11.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
11.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
11.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
11.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
11.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
11.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
11.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
11.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
11.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
11.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
11.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
11.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
10.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
10.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
10.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
10.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
10.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
9.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
9.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
9.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
9.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
9.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
9.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
9.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
9.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
9.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
8.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
8.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
8.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
8.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
7.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
7.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
7.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
7.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
7.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
7.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
7.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
7.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
6.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
6.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
6.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
6.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
6.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
5.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
5.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
5.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
5.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
3.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
567
Tumor
2.2
557
Tumor
2.0
375
Tumor
2.0
395
Tumor
1.9
267
Tumor
1.6
1041
Tumor
1.3
965
Tumor
1.2
483
Tumor
1.2
537
Tumor
1.2
641
Tumor
1.1
471
Tumor
1.1
427
Tumor
1.1
1015
Tumor
1.1
635
Tumor
1.1
573
Tumor
1.0
663
Tumor
1.0
865
Tumor
1.0
497
Tumor
1.0
231
Tumor
1.0
877
Tumor
0.9
1013
Tumor
0.8
351
Tumor
0.8
135
Tumor
0.8
1021
Tumor
0.8
533
Tumor
0.8
445
Tumor
0.8
473
Tumor
0.8
913
Tumor
0.8
413
Tumor
0.7
857
Tumor
0.7
277
Tumor
0.7
823
Tumor
0.7
525
Tumor
0.7
951
Tumor
0.6
493
Tumor
0.6
671
Tumor
0.6
161
Tumor
0.6
715
Tumor
0.6
257
Tumor
0.6
685
Tumor
0.5
433
Tumor
0.5
112
Tumor
0.5
517
Tumor
0.5
957
Tumor
0.5
563
Tumor
0.5
211
Tumor
0.5
367
Tumor
0.5
617
Tumor
0.5
873
Tumor
0.5
755
Tumor
0.5
361
Tumor
0.4
881
Tumor
0.4
697
Tumor
0.4
283
Tumor
0.4
385
Tumor
0.4
925
Tumor
0.4
921
Tumor
0.4
425
Tumor
0.4
443
Tumor
0.4
545
Tumor
0.4
113
Tumor
0.4
327
Tumor
0.3
661
Tumor
0.3
477
Tumor
0.3
983
Tumor
0.3
147
Tumor
0.3
435
Tumor
0.3
127
Tumor
0.3
553
Tumor
0.3
213
Tumor
0.3
851
Tumor
0.3
423
Tumor
0.3
221
Tumor
0.3
421
Tumor
0.3
185
Tumor
0.2
817
Tumor
0.2
187
Tumor
0.2
353
Tumor
0.2
534
Normal
0.2
341
Tumor
0.2
467
Tumor
0.2
513
Tumor
0.2
171
Tumor
0.2
145
Tumor
0.2
665
Tumor
0.2
297
Tumor
0.2
523
Tumor
0.2
963
Tumor
0.2
861
Tumor
0.2
977
Tumor
0.2
745
Tumor
0.2
191
Tumor
0.2
554
Normal
0.2
883
Tumor
0.1
538
Normal
0.1
465
Tumor
0.1
131
Tumor
0.1
391
Tumor
0.1
451
Tumor
0.1
867
Tumor
0.1
721
Tumor
0.1
393
Tumor
0.1
953
Tumor
0.1
981
Tumor
0.1
313
Tumor
0.1
975
Tumor
0.1
737
Tumor
0.1
331
Tumor
0.0
546
Normal
0.0
195
Tumor
0.0
132
Normal
0.0
461
Tumor
0.0
123
Tumor
0.0
463
Tumor
0.0
863
Tumor
0.0
431
Tumor
0.0
958
Normal
0.0
915
Tumor
0.0
186
Normal
0.0
141
Tumor
0.0
923
Tumor
0.0
415
Tumor
-0.1
162
Normal
-0.1
285
Tumor
-0.1
818
Normal
-0.1
727
Tumor
-0.1
858
Normal
-0.1
355
Tumor
-0.1
515
Tumor
-0.1
743
Tumor
-0.1
217
Tumor
-0.1
571
Tumor
-0.1
148
Normal
-0.1
146
Normal
-0.1
528
Normal
-0.1
271
Tumor
-0.1
1027
Tumor
-0.1
968
Normal
-0.1
785
Tumor
-0.1
868
Normal
-0.1
911
Tumor
-0.1
852
Normal
-0.1
492
Normal
-0.1
967
Tumor
-0.1
357
Tumor
-0.2
647
Tumor
-0.2
518
Normal
-0.2
343
Tumor
-0.2
124
Normal
-0.2
884
Normal
-0.2
862
Normal
-0.2
777
Tumor
-0.2
514
Normal
-0.2
172
Normal
-0.2
524
Normal
-0.2
188
Normal
-0.2
387
Tumor
-0.2
424
Normal
-0.2
136
Normal
-0.2
535
Tumor
-0.2
526
Normal
-0.2
428
Normal
-0.2
527
Tumor
-0.2
411
Tumor
-0.2
227
Tumor
-0.2
564
Normal
-0.2
491
Tumor
-0.2
268
Normal
-0.2
422
Normal
-0.2
742
Normal
-0.2
392
Normal
-0.2
724
Normal
-0.2
368
Normal
-0.2
455
Tumor
-0.2
474
Normal
-0.3
383
Tumor
-0.3
672
Normal
-0.3
574
Normal
-0.3
363
Tumor
-0.3
138
Normal
-0.3
1031
Tumor
-0.3
142
Normal
-0.3
943
Tumor
-0.3
568
Normal
-0.3
192
Normal
-0.3
976
Normal
-0.3
414
Normal
-0.3
824
Normal
-0.3
642
Normal
-0.3
864
Normal
-0.3
376
Normal
-0.3
516
Normal
-0.3
311
Tumor
-0.3
744
Normal
-0.3
366
Normal
-0.3
426
Normal
-0.3
874
Normal
-0.3
964
Normal
-0.3
365
Tumor
-0.3
111
Normal
-0.3
484
Normal
-0.3
615
Tumor
-0.3
125
Tumor
-0.4
955
Tumor
-0.4
362
Normal
-0.4
648
Normal
-0.4
232
Normal
-0.4
128
Normal
-0.4
386
Normal
-0.4
723
Tumor
-0.4
396
Normal
-0.4
924
Normal
-0.4
261
Tumor
-0.4
937
Tumor
-0.4
572
Normal
-0.4
536
Normal
-0.4
662
Normal
-0.4
416
Normal
-0.4
558
Normal
-0.4
914
Normal
-0.4
284
Normal
-0.4
223
Tumor
-0.4
815
Tumor
-0.4
384
Normal
-0.4
342
Normal
-0.4
114
Normal
-0.4
666
Normal
-0.4
262
Normal
-0.4
388
Normal
-0.4
664
Normal
-0.4
494
Normal
-0.5
866
Normal
-0.5
916
Normal
-0.5
447
Tumor
-0.5
814
Normal
-0.5
137
Tumor
-0.5
984
Normal
-0.5
434
Normal
-0.5
456
Normal
-0.5
286
Normal
-0.5
354
Normal
-0.5
452
Normal
-0.5
278
Normal
-0.5
912
Normal
-0.5
258
Normal
-0.5
224
Normal
-0.5
741
Tumor
-0.5
352
Normal
-0.5
312
Normal
-0.5
394
Normal
-0.5
922
Normal
-0.5
966
Normal
-0.5
917
Tumor
-0.5
728
Normal
-0.5
468
Normal
-0.5
1045
Tumor
-0.5
344
Normal
-0.5
956
Normal
-0.5
218
Normal
-0.5
272
Normal
-0.5
478
Normal
-0.5
696
Normal
-0.5
878
Normal
-0.5
926
Normal
-0.5
487
Tumor
-0.6
618
Normal
-0.6
1028
Normal
-0.6
482
Normal
-0.6
816
Normal
-0.6
212
Normal
-0.6
722
Normal
-0.6
466
Normal
-0.6
918
Normal
-0.6
627
Tumor
-0.6
636
Normal
-0.6
1016
Normal
-0.6
738
Normal
-0.6
616
Normal
-0.6
436
Normal
-0.6
228
Normal
-0.6
298
Normal
-0.6
978
Normal
-0.6
954
Normal
-0.6
498
Normal
-0.6
882
Normal
-0.6
214
Normal
-0.6
126
Normal
-0.6
714
Normal
-0.6
444
Normal
-0.6
1042
Normal
-0.6
982
Normal
-0.6
713
Tumor
-0.6
1025
Tumor
-0.6
746
Normal
-0.6
472
Normal
-0.6
1043
Tumor
-0.6
628
Normal
-0.7
756
Normal
-0.7
356
Normal
-0.7
358
Normal
-0.7
448
Normal
-0.7
446
Normal
-0.7
686
Normal
-0.7
314
Normal
-0.7
464
Normal
-0.7
786
Normal
-0.7
488
Normal
-0.7
222
Normal
-0.7
813
Tumor
-0.7
462
Normal
-0.7
412
Normal
-0.8
944
Normal
-0.8
1026
Normal
-0.8
952
Normal
-0.8
1046
Normal
-0.8
778
Normal
-0.8
364
Normal
-0.8
432
Normal
-0.9
1032
Normal
-0.9
698
Normal
-0.9
328
Normal
-0.9
332
Normal
-0.9
938
Normal
-1.0
1022
Normal
-1.0
695
Tumor
-1.0
196
Normal
-1.1
1044
Normal
-1.3
716
Normal
-1.6
481
Tumor
-2.3
1014
Normal
-2.4
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
