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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UBE2E2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
29.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
28.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
27.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
26.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
24.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
23.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
20.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
19.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
19.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
19.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
19.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
17.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
17.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
16.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
16.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
16.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
16.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
15.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
15.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
15.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
14.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
14.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
13.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
13.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
13.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
12.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
12.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
12.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
12.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
12.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
12.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
12.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
11.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
11.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
11.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
11.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
11.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
11.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
11.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
11.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
11.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
11.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
11.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
11.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
10.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
10.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
10.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
10.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
10.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
10.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
10.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
10.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
10.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
10.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
10.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
9.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
9.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
9.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
9.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
9.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
9.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
9.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
9.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
9.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
9.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
9.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
9.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
9.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
9.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
9.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
9.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
9.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
9.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
9.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
9.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
9.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
9.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
9.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
9.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
9.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
8.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
8.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
8.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
8.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
8.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
8.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
8.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
8.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
8.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
8.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
8.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
8.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
8.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
8.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
8.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
8.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
7.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
7.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
7.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
7.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
7.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
7.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
7.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
7.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
7.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
7.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
7.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
7.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
7.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
7.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
7.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
7.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
7.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
7.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
7.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
7.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
7.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
7.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
7.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
6.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
6.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
6.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
6.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
6.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
6.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
6.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
6.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
6.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
6.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
6.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
6.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
6.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
6.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
6.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
6.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
5.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
5.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
5.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
5.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
5.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
5.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
5.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
5.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
5.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
5.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
5.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
5.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
5.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
5.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
5.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
5.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
5.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
5.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
5.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
4.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
4.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
4.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
4.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
4.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
4.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
4.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
4.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
4.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
4.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
4.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
4.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
3.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
3.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
3.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
3.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
3.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
3.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
3.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
3.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
3.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
3.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
3.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
2.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
2.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
2.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
2.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
2.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
2.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
2.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
2.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
2.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
2.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
2.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
2.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
2.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
1.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
1.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
1.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
1.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
1.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
1.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
1.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
1.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
1.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
1.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
1.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
1.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
1.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
1.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
1.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
1.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
1.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
1.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
1.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
1.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
1.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
1.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
1.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
0.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
0.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UBE2E2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.8
Number of samples
231
Samples
Sample
Description
TPM
DO45127
0 years, male, NA, stage:3, dead, 420 days
29.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
19.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
17.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
17.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
16.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
16.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
16.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
15.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
14.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
14.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
14.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
14.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
13.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
13.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
13.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
13.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
13.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
13.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
13.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
13.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
12.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
12.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
12.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
12.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
12.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
12.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
11.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
11.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
11.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
11.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
11.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
11.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
11.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
11.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
11.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
11.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
11.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
10.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
10.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
10.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
10.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
10.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
10.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
10.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
10.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
10.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
10.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
9.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
9.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
9.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
9.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
9.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
9.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
9.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
9.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
9.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
9.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
9.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
9.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
9.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
9.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
9.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
9.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
8.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
8.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
8.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
8.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
8.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
8.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
8.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
8.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
8.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
8.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
8.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
8.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
8.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
8.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
8.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
8.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
8.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
8.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
8.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
7.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
7.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
7.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
7.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
7.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
7.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
7.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
7.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
7.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
7.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
7.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
7.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
6.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
6.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
6.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
6.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
6.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
6.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
6.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
6.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
6.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
6.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
6.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
6.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
6.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
5.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
5.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
5.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
5.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
5.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
5.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
5.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
5.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
5.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
5.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
5.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
5.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
5.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
5.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
5.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
5.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
5.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
5.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
5.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
5.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
5.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
5.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
5.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
4.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
4.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
4.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
4.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
4.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
4.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
4.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
4.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
4.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
4.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
4.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
4.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
4.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
4.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
4.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
3.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
3.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
3.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
3.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
3.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
3.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
3.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
3.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
2.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
2.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
2.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
2.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
2.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
2.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
2.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
2.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
2.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
2.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
2.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
2.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
1.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
1.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
1.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
1.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
1.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
1.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
1.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
1.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
1.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
1.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
1.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
1.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
1.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
1.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
1.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
1.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
1.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
1.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
0.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
131
Tumor
1.0
385
Tumor
0.9
743
Tumor
0.9
283
Tumor
0.9
535
Tumor
0.8
1031
Tumor
0.7
983
Tumor
0.7
517
Tumor
0.7
425
Tumor
0.7
715
Tumor
0.7
1025
Tumor
0.6
395
Tumor
0.6
427
Tumor
0.5
661
Tumor
0.5
851
Tumor
0.5
387
Tumor
0.5
192
Normal
0.5
815
Tumor
0.5
285
Tumor
0.5
641
Tumor
0.5
391
Tumor
0.5
421
Tumor
0.4
223
Tumor
0.4
331
Tumor
0.4
523
Tumor
0.4
471
Tumor
0.4
211
Tumor
0.4
567
Tumor
0.4
737
Tumor
0.4
917
Tumor
0.4
125
Tumor
0.4
881
Tumor
0.4
713
Tumor
0.4
213
Tumor
0.3
447
Tumor
0.3
943
Tumor
0.3
865
Tumor
0.3
1045
Tumor
0.3
537
Tumor
0.3
221
Tumor
0.3
817
Tumor
0.3
877
Tumor
0.3
513
Tumor
0.3
536
Normal
0.3
923
Tumor
0.3
965
Tumor
0.3
113
Tumor
0.3
185
Tumor
0.3
393
Tumor
0.3
363
Tumor
0.3
617
Tumor
0.3
227
Tumor
0.3
311
Tumor
0.3
913
Tumor
0.3
745
Tumor
0.3
478
Normal
0.2
443
Tumor
0.2
343
Tumor
0.2
857
Tumor
0.2
444
Normal
0.2
217
Tumor
0.2
873
Tumor
0.2
344
Normal
0.2
921
Tumor
0.2
341
Tumor
0.2
161
Tumor
0.2
491
Tumor
0.2
497
Tumor
0.2
297
Tumor
0.2
814
Normal
0.2
455
Tumor
0.2
545
Tumor
0.2
937
Tumor
0.2
916
Normal
0.2
721
Tumor
0.2
415
Tumor
0.2
966
Normal
0.2
1041
Tumor
0.2
1021
Tumor
0.2
635
Tumor
0.2
411
Tumor
0.2
135
Tumor
0.2
525
Tumor
0.2
428
Normal
0.2
498
Normal
0.1
451
Tumor
0.1
431
Tumor
0.1
384
Normal
0.1
327
Tumor
0.1
492
Normal
0.1
967
Tumor
0.1
483
Tumor
0.1
386
Normal
0.1
852
Normal
0.1
191
Tumor
0.1
364
Normal
0.1
268
Normal
0.1
671
Tumor
0.1
515
Tumor
0.1
224
Normal
0.1
573
Tumor
0.1
434
Normal
0.1
413
Tumor
0.1
261
Tumor
0.1
665
Tumor
0.1
861
Tumor
0.1
716
Normal
0.1
487
Tumor
0.1
878
Normal
0.1
461
Tumor
0.1
963
Tumor
0.1
813
Tumor
0.1
262
Normal
0.1
755
Tumor
0.1
424
Normal
0.1
141
Tumor
0.1
416
Normal
0.1
147
Tumor
0.1
257
Tumor
0.1
272
Normal
0.0
874
Normal
0.0
925
Tumor
0.0
1043
Tumor
0.0
426
Normal
0.0
911
Tumor
0.0
367
Tumor
0.0
414
Normal
0.0
823
Tumor
0.0
975
Tumor
0.0
977
Tumor
0.0
422
Normal
0.0
952
Normal
0.0
862
Normal
0.0
697
Tumor
0.0
467
Tumor
0.0
516
Normal
0.0
938
Normal
0.0
976
Normal
0.0
352
Normal
0.0
951
Tumor
0.0
212
Normal
0.0
474
Normal
0.0
1015
Tumor
0.0
146
Normal
0.0
777
Tumor
0.0
554
Normal
0.0
864
Normal
0.0
1028
Normal
0.0
126
Normal
0.0
284
Normal
0.0
524
Normal
0.0
616
Normal
0.0
628
Normal
0.0
518
Normal
0.0
744
Normal
0.0
228
Normal
0.0
488
Normal
0.0
267
Tumor
0.0
968
Normal
0.0
883
Tumor
0.0
924
Normal
0.0
286
Normal
0.0
922
Normal
0.0
957
Tumor
0.0
354
Normal
0.0
958
Normal
0.0
714
Normal
0.0
816
Normal
0.0
412
Normal
0.0
232
Normal
0.0
984
Normal
-0.1
1044
Normal
-0.1
563
Tumor
-0.1
472
Normal
-0.1
696
Normal
-0.1
914
Normal
-0.1
918
Normal
-0.1
746
Normal
-0.1
351
Tumor
-0.1
738
Normal
-0.1
546
Normal
-0.1
741
Tumor
-0.1
145
Tumor
-0.1
448
Normal
-0.1
982
Normal
-0.1
955
Tumor
-0.1
538
Normal
-0.1
477
Tumor
-0.1
785
Tumor
-0.1
435
Tumor
-0.1
456
Normal
-0.1
722
Normal
-0.1
723
Tumor
-0.1
466
Normal
-0.1
686
Normal
-0.1
137
Tumor
-0.1
727
Tumor
-0.1
468
Normal
-0.1
484
Normal
-0.1
188
Normal
-0.1
446
Normal
-0.1
618
Normal
-0.1
1026
Normal
-0.1
698
Normal
-0.1
818
Normal
-0.1
571
Tumor
-0.1
742
Normal
-0.1
462
Normal
-0.1
662
Normal
-0.1
824
Normal
-0.1
778
Normal
-0.1
558
Normal
-0.1
142
Normal
-0.1
433
Tumor
-0.1
396
Normal
-0.1
534
Normal
-0.1
394
Normal
-0.1
356
Normal
-0.1
494
Normal
-0.1
148
Normal
-0.2
964
Normal
-0.2
858
Normal
-0.2
214
Normal
-0.2
756
Normal
-0.2
127
Tumor
-0.2
553
Tumor
-0.2
355
Tumor
-0.2
1016
Normal
-0.2
464
Normal
-0.2
328
Normal
-0.2
642
Normal
-0.2
978
Normal
-0.2
926
Normal
-0.2
452
Normal
-0.2
277
Tumor
-0.2
493
Tumor
-0.2
1014
Normal
-0.2
271
Tumor
-0.2
533
Tumor
-0.2
866
Normal
-0.2
1022
Normal
-0.2
314
Normal
-0.2
111
Normal
-0.2
572
Normal
-0.2
953
Tumor
-0.2
627
Tumor
-0.2
514
Normal
-0.2
138
Normal
-0.2
527
Tumor
-0.2
258
Normal
-0.2
353
Tumor
-0.2
636
Normal
-0.2
956
Normal
-0.2
1046
Normal
-0.2
332
Normal
-0.2
1032
Normal
-0.2
278
Normal
-0.2
218
Normal
-0.2
528
Normal
-0.2
388
Normal
-0.2
132
Normal
-0.2
557
Tumor
-0.2
786
Normal
-0.2
298
Normal
-0.3
124
Normal
-0.3
368
Normal
-0.3
136
Normal
-0.3
1013
Tumor
-0.3
432
Normal
-0.3
312
Normal
-0.3
114
Normal
-0.3
313
Tumor
-0.3
695
Tumor
-0.3
473
Tumor
-0.3
863
Tumor
-0.3
123
Tumor
-0.3
342
Normal
-0.3
664
Normal
-0.3
648
Normal
-0.3
463
Tumor
-0.3
112
Tumor
-0.3
724
Normal
-0.3
944
Normal
-0.3
187
Tumor
-0.3
436
Normal
-0.3
672
Normal
-0.3
481
Tumor
-0.3
128
Normal
-0.3
685
Tumor
-0.3
362
Normal
-0.3
366
Normal
-0.3
196
Normal
-0.3
195
Tumor
-0.3
867
Tumor
-0.3
186
Normal
-0.3
615
Tumor
-0.3
647
Tumor
-0.3
526
Normal
-0.3
445
Tumor
-0.3
358
Normal
-0.3
868
Normal
-0.3
882
Normal
-0.3
383
Tumor
-0.3
423
Tumor
-0.3
728
Normal
-0.4
568
Normal
-0.4
884
Normal
-0.4
231
Tumor
-0.4
392
Normal
-0.4
954
Normal
-0.4
482
Normal
-0.4
574
Normal
-0.4
172
Normal
-0.4
171
Tumor
-0.4
915
Tumor
-0.4
1042
Normal
-0.4
162
Normal
-0.4
981
Tumor
-0.4
564
Normal
-0.4
663
Tumor
-0.4
222
Normal
-0.5
666
Normal
-0.5
1027
Tumor
-0.5
375
Tumor
-0.5
912
Normal
-0.5
376
Normal
-0.6
361
Tumor
-0.7
365
Tumor
-0.8
465
Tumor
-1.1
357
Tumor
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
