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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
EXT1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
57.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
48.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
35.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
32.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
31.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
30.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
29.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
28.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
28.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
28.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
27.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
27.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
27.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
26.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
25.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
25.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
24.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
24.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
23.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
22.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
21.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
21.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
21.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
20.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
20.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
20.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
20.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
19.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
19.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
19.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
18.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
18.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
18.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
18.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
18.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
17.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
17.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
17.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
17.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
17.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
16.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
16.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
16.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
16.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
16.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
16.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
16.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
15.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
15.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
15.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
15.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
15.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
15.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
15.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
14.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
14.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
14.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
14.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
14.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
14.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
14.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
14.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
14.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
14.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
14.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
14.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
13.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
13.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
13.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
13.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
13.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
13.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
13.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
13.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
13.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
12.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
12.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
12.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
12.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
12.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
12.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
12.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
12.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
12.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
12.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
12.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
12.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
12.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
12.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
12.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
12.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
12.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
12.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
12.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
12.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
12.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
12.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
11.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
11.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
11.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
11.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
11.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
11.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
11.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
11.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
11.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
11.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
11.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
11.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
11.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
11.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
11.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
11.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
11.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
11.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
11.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
10.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
10.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
10.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
10.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
10.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
10.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
10.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
10.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
10.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
10.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
10.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
10.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
10.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
10.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
10.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
10.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
9.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
9.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
9.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
9.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
9.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
9.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
9.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
9.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
9.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
9.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
9.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
9.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
9.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
9.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
9.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
9.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
9.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
9.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
9.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
9.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
9.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
9.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
8.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
8.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
8.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
8.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
8.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
8.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
8.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
8.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
8.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
8.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
8.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
8.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
8.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
8.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
8.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
8.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
8.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
8.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
8.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
8.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
8.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
8.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
8.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
8.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
8.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
8.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
8.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
7.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
7.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
7.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
7.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
7.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
7.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
7.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
7.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
7.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
7.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
7.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
7.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
7.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
7.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
7.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
7.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
7.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
7.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
6.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
6.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
6.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
6.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
6.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
6.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
6.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
6.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
6.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
6.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
6.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
6.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
6.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
6.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
6.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
6.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
6.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
6.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
6.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
6.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
6.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
6.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
6.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
6.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
6.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
6.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
5.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
5.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
5.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
5.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
5.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
5.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
5.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
5.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
5.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
5.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
5.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
5.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
5.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
4.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
4.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
4.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
4.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
4.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
4.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
4.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
4.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
4.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
4.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
4.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
4.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
4.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
4.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
4.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
4.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
4.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
4.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
4.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
3.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
3.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
3.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
3.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
3.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
3.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
3.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
3.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
3.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
3.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
3.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
3.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
3.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
3.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
3.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
3.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
2.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
2.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
2.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
2.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
2.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
2.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
EXT1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
28.4
Number of samples
231
Samples
Sample
Description
TPM
DO50805
0 years, male, NA, stage:2, alive, 690 days
87.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
81.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
81.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
74.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
71.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
70.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
69.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
66.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
66.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
62.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
62.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
62.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
60.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
59.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
58.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
58.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
55.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
53.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
52.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
52.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
51.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
51.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
50.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
50.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
49.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
49.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
49.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
49.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
48.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
46.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
46.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
46.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
46.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
46.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
46.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
45.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
44.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
44.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
43.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
42.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
42.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
42.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
41.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
41.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
41.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
41.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
40.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
40.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
40.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
40.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
39.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
39.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
39.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
38.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
38.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
38.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
36.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
36.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
36.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
35.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
35.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
35.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
35.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
35.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
34.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
34.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
34.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
34.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
34.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
33.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
32.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
32.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
32.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
32.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
31.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
31.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
31.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
31.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
31.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
31.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
30.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
30.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
30.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
30.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
30.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
30.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
29.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
29.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
29.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
29.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
29.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
28.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
28.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
28.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
28.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
27.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
27.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
27.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
26.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
26.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
26.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
26.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
26.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
26.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
25.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
25.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
25.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
25.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
25.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
25.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
24.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
24.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
24.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
24.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
24.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
24.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
24.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
24.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
23.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
23.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
23.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
23.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
23.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
23.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
23.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
23.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
23.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
22.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
22.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
22.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
22.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
22.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
22.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
22.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
21.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
21.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
21.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
21.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
20.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
20.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
20.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
20.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
20.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
19.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
19.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
19.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
19.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
19.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
19.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
19.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
19.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
19.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
18.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
18.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
18.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
18.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
18.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
18.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
18.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
18.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
18.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
18.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
18.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
17.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
17.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
17.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
17.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
17.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
17.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
17.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
17.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
17.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
16.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
16.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
16.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
16.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
16.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
16.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
16.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
16.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
15.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
15.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
15.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
15.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
14.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
14.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
14.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
14.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
14.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
14.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
14.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
14.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
13.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
13.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
13.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
13.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
13.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
13.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
13.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
12.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
12.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
12.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
12.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
12.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
12.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
12.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
12.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
12.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
11.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
11.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
11.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
11.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
11.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
11.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
10.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
10.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
10.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
10.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
9.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
9.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
9.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
9.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
9.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
9.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
8.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
8.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
8.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
7.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
6.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
4.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
4.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
131
Tumor
1.3
343
Tumor
1.2
557
Tumor
1.1
865
Tumor
1.0
1025
Tumor
1.0
135
Tumor
1.0
223
Tumor
0.9
331
Tumor
0.9
467
Tumor
0.8
744
Normal
0.8
573
Tumor
0.8
425
Tumor
0.8
671
Tumor
0.7
285
Tumor
0.7
545
Tumor
0.7
523
Tumor
0.7
877
Tumor
0.7
267
Tumor
0.6
297
Tumor
0.6
1041
Tumor
0.6
283
Tumor
0.6
743
Tumor
0.5
537
Tumor
0.5
375
Tumor
0.5
445
Tumor
0.5
367
Tumor
0.5
461
Tumor
0.5
527
Tumor
0.5
145
Tumor
0.4
217
Tumor
0.4
311
Tumor
0.4
187
Tumor
0.4
463
Tumor
0.4
277
Tumor
0.4
221
Tumor
0.4
823
Tumor
0.4
917
Tumor
0.4
535
Tumor
0.4
314
Normal
0.4
443
Tumor
0.4
394
Normal
0.4
975
Tumor
0.3
1021
Tumor
0.3
525
Tumor
0.3
951
Tumor
0.3
386
Normal
0.3
471
Tumor
0.3
191
Tumor
0.3
332
Normal
0.3
641
Tumor
0.3
192
Normal
0.3
567
Tumor
0.3
388
Normal
0.3
231
Tumor
0.3
211
Tumor
0.3
571
Tumor
0.3
427
Tumor
0.3
497
Tumor
0.3
195
Tumor
0.3
517
Tumor
0.3
817
Tumor
0.3
313
Tumor
0.2
298
Normal
0.2
312
Normal
0.2
957
Tumor
0.2
983
Tumor
0.2
161
Tumor
0.2
967
Tumor
0.2
341
Tumor
0.2
224
Normal
0.2
665
Tumor
0.2
563
Tumor
0.2
1044
Normal
0.2
713
Tumor
0.2
663
Tumor
0.2
435
Tumor
0.2
447
Tumor
0.2
365
Tumor
0.2
813
Tumor
0.2
925
Tumor
0.2
213
Tumor
0.2
257
Tumor
0.2
423
Tumor
0.1
368
Normal
0.1
361
Tumor
0.1
421
Tumor
0.1
218
Normal
0.1
147
Tumor
0.1
376
Normal
0.1
666
Normal
0.1
615
Tumor
0.1
568
Normal
0.1
353
Tumor
0.1
422
Normal
0.1
627
Tumor
0.1
352
Normal
0.1
664
Normal
0.1
564
Normal
0.1
672
Normal
0.1
342
Normal
0.1
863
Tumor
0.1
574
Normal
0.1
448
Normal
0.1
433
Tumor
0.1
185
Tumor
0.1
452
Normal
0.1
873
Tumor
0.1
222
Normal
0.1
558
Normal
0.1
923
Tumor
0.1
1045
Tumor
0.1
722
Normal
0.1
434
Normal
0.1
697
Tumor
0.0
456
Normal
0.0
1016
Normal
0.0
278
Normal
0.0
384
Normal
0.0
271
Tumor
0.0
756
Normal
0.0
943
Tumor
0.0
431
Tumor
0.0
715
Tumor
0.0
786
Normal
0.0
857
Tumor
0.0
455
Tumor
0.0
963
Tumor
0.0
214
Normal
0.0
383
Tumor
0.0
432
Normal
0.0
451
Tumor
0.0
738
Normal
0.0
635
Tumor
0.0
196
Normal
0.0
662
Normal
0.0
648
Normal
0.0
647
Tumor
0.0
642
Normal
0.0
914
Normal
0.0
815
Tumor
0.0
723
Tumor
0.0
125
Tumor
0.0
286
Normal
0.0
396
Normal
0.0
357
Tumor
0.0
636
Normal
0.0
351
Tumor
0.0
444
Normal
0.0
354
Normal
0.0
814
Normal
0.0
344
Normal
0.0
572
Normal
0.0
746
Normal
0.0
436
Normal
0.0
978
Normal
0.0
881
Tumor
0.0
685
Tumor
-0.1
462
Normal
-0.1
1046
Normal
-0.1
366
Normal
-0.1
468
Normal
-0.1
1031
Tumor
-0.1
851
Tumor
-0.1
392
Normal
-0.1
228
Normal
-0.1
698
Normal
-0.1
618
Normal
-0.1
358
Normal
-0.1
413
Tumor
-0.1
284
Normal
-0.1
426
Normal
-0.1
721
Tumor
-0.1
533
Tumor
-0.1
113
Tumor
-0.1
385
Tumor
-0.1
818
Normal
-0.1
1027
Tumor
-0.1
355
Tumor
-0.1
617
Tumor
-0.1
428
Normal
-0.1
227
Tumor
-0.1
464
Normal
-0.1
362
Normal
-0.1
513
Tumor
-0.1
416
Normal
-0.2
515
Tumor
-0.2
446
Normal
-0.2
465
Tumor
-0.2
937
Tumor
-0.2
1015
Tumor
-0.2
363
Tumor
-0.2
862
Normal
-0.2
984
Normal
-0.2
111
Normal
-0.2
724
Normal
-0.2
913
Tumor
-0.2
953
Tumor
-0.2
628
Normal
-0.2
912
Normal
-0.2
926
Normal
-0.2
424
Normal
-0.2
393
Tumor
-0.2
524
Normal
-0.2
137
Tumor
-0.2
536
Normal
-0.2
976
Normal
-0.2
414
Normal
-0.2
958
Normal
-0.2
661
Tumor
-0.2
466
Normal
-0.2
874
Normal
-0.2
387
Tumor
-0.2
964
Normal
-0.2
528
Normal
-0.2
262
Normal
-0.2
391
Tumor
-0.2
742
Normal
-0.2
883
Tumor
-0.2
493
Tumor
-0.2
132
Normal
-0.2
981
Tumor
-0.2
616
Normal
-0.2
858
Normal
-0.2
956
Normal
-0.2
268
Normal
-0.2
824
Normal
-0.2
483
Tumor
-0.2
921
Tumor
-0.2
126
Normal
-0.2
714
Normal
-0.2
232
Normal
-0.2
356
Normal
-0.3
884
Normal
-0.3
514
Normal
-0.3
124
Normal
-0.3
146
Normal
-0.3
395
Tumor
-0.3
212
Normal
-0.3
1013
Tumor
-0.3
328
Normal
-0.3
478
Normal
-0.3
473
Tumor
-0.3
745
Tumor
-0.3
141
Tumor
-0.3
364
Normal
-0.3
911
Tumor
-0.3
882
Normal
-0.3
482
Normal
-0.3
868
Normal
-0.3
816
Normal
-0.3
112
Tumor
-0.3
171
Tumor
-0.3
852
Normal
-0.3
472
Normal
-0.3
878
Normal
-0.3
922
Normal
-0.3
258
Normal
-0.3
977
Tumor
-0.3
114
Normal
-0.3
778
Normal
-0.3
138
Normal
-0.3
716
Normal
-0.3
1043
Tumor
-0.3
474
Normal
-0.3
864
Normal
-0.3
272
Normal
-0.3
526
Normal
-0.3
696
Normal
-0.3
686
Normal
-0.3
136
Normal
-0.3
534
Normal
-0.3
261
Tumor
-0.3
128
Normal
-0.3
695
Tumor
-0.3
777
Tumor
-0.4
916
Normal
-0.4
918
Normal
-0.4
741
Tumor
-0.4
477
Tumor
-0.4
866
Normal
-0.4
755
Tumor
-0.4
327
Tumor
-0.4
481
Tumor
-0.4
538
Normal
-0.4
861
Tumor
-0.4
966
Normal
-0.4
415
Tumor
-0.4
186
Normal
-0.4
938
Normal
-0.4
954
Normal
-0.4
982
Normal
-0.4
727
Tumor
-0.4
142
Normal
-0.4
516
Normal
-0.4
162
Normal
-0.4
188
Normal
-0.4
944
Normal
-0.4
924
Normal
-0.4
172
Normal
-0.4
1014
Normal
-0.4
968
Normal
-0.4
1022
Normal
-0.5
411
Tumor
-0.5
955
Tumor
-0.5
518
Normal
-0.5
915
Tumor
-0.5
148
Normal
-0.5
546
Normal
-0.5
952
Normal
-0.5
867
Tumor
-0.5
1026
Normal
-0.5
123
Tumor
-0.5
553
Tumor
-0.5
785
Tumor
-0.5
412
Normal
-0.5
491
Tumor
-0.6
554
Normal
-0.6
1028
Normal
-0.6
1042
Normal
-0.6
498
Normal
-0.6
965
Tumor
-0.6
494
Normal
-0.6
488
Normal
-0.7
127
Tumor
-0.7
484
Normal
-0.7
487
Tumor
-0.7
737
Tumor
-0.7
728
Normal
-0.7
1032
Normal
-0.9
492
Normal
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
