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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MRPS16 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
30.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
75.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
67.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
61.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
59.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
59.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
59.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
58.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
58.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
57.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
56.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
55.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
55.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
55.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
53.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
52.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
52.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
52.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
52.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
52.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
51.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
50.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
50.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
50.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
50.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
49.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
49.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
49.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
47.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
47.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
46.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
46.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
46.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
46.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
45.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
44.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
44.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
44.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
44.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
43.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
43.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
43.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
43.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
42.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
42.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
42.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
42.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
42.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
42.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
42.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
41.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
41.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
41.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
41.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
41.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
41.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
41.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
40.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
40.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
40.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
40.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
40.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
39.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
39.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
39.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
39.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
39.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
39.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
39.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
39.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
38.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
38.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
38.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
38.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
38.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
38.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
38.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
38.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
38.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
38.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
38.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
37.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
37.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
37.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
37.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
37.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
37.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
37.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
37.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
37.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
37.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
37.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
36.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
36.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
36.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
36.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
36.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
36.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
36.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
35.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
35.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
35.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
35.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
35.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
35.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
35.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
35.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
35.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
35.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
35.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
34.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
34.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
34.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
34.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
34.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
34.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
34.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
34.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
33.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
33.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
33.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
33.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
33.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
33.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
33.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
33.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
33.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
33.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
32.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
32.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
32.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
32.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
32.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
32.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
32.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
31.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
31.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
31.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
31.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
31.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
31.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
31.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
31.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
31.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
31.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
31.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
30.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
30.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
30.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
30.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
30.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
30.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
30.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
30.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
30.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
30.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
30.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
30.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
29.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
29.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
29.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
29.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
29.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
29.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
29.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
29.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
29.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
29.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
29.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
29.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
29.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
29.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
29.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
28.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
28.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
28.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
28.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
28.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
28.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
28.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
28.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
28.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
28.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
28.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
28.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
28.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
28.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
28.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
28.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
28.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
28.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
28.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
28.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
28.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
28.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
27.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
27.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
27.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
27.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
27.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
27.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
27.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
27.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
27.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
27.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
27.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
27.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
27.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
27.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
27.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
27.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
26.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
26.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
26.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
26.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
26.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
26.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
26.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
26.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
26.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
26.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
26.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
26.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
26.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
26.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
25.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
25.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
25.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
25.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
25.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
25.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
25.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
25.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
25.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
25.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
25.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
25.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
25.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
25.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
25.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
25.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
25.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
25.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
25.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
24.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
24.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
24.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
24.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
24.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
24.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
24.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
24.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
24.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
24.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
24.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
24.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
24.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
24.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
24.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
24.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
23.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
23.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
23.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
23.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
23.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
23.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
23.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
23.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
23.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
23.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
23.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
23.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
23.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
23.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
23.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
23.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
23.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
23.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
23.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
22.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
22.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
22.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
22.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
22.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
22.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
22.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
22.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
22.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
22.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
22.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
22.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
22.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
22.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
22.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
22.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
22.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
21.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
21.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
21.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
21.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
21.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
21.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
21.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
21.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
21.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
21.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
21.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
20.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
20.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
20.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
20.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
20.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
20.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
20.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
20.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
20.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
19.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
19.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
19.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
19.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
19.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
19.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
19.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
19.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
18.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
18.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
18.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
18.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
18.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
18.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
17.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
17.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
17.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
17.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
17.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
17.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
17.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
16.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
16.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
16.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
16.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
16.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
16.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
15.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
15.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
15.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
15.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
15.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
15.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
15.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
14.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
14.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
14.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
14.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
14.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
14.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
14.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
13.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
13.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
11.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
9.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
8.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MRPS16 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
25.6
Number of samples
231
Samples
Sample
Description
TPM
DO23508
0 years, female, NA, stage:2, alive, 390 days
118.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
64.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
61.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
54.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
53.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
52.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
49.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
48.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
45.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
45.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
45.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
44.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
43.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
43.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
42.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
42.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
42.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
42.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
41.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
40.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
40.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
39.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
39.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
39.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
38.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
38.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
38.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
37.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
36.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
36.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
36.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
35.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
35.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
35.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
35.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
34.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
34.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
34.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
34.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
33.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
33.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
33.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
32.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
32.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
32.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
32.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
32.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
32.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
32.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
32.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
31.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
31.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
31.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
31.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
31.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
31.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
31.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
30.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
30.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
30.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
30.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
30.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
30.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
29.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
29.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
29.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
29.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
29.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
28.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
28.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
28.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
28.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
28.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
27.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
27.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
27.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
27.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
27.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
27.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
27.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
27.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
27.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
26.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
26.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
26.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
26.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
26.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
26.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
26.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
26.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
25.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
25.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
25.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
25.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
25.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
25.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
25.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
25.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
25.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
25.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
25.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
24.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
24.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
24.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
24.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
24.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
24.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
24.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
24.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
24.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
24.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
24.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
24.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
24.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
24.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
24.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
23.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
23.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
23.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
23.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
23.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
22.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
22.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
22.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
22.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
22.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
22.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
22.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
22.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
21.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
21.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
21.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
21.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
21.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
21.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
21.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
21.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
21.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
21.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
20.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
20.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
20.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
20.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
20.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
20.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
20.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
20.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
20.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
19.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
19.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
19.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
19.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
19.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
19.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
19.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
19.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
19.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
19.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
19.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
18.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
18.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
18.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
18.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
18.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
18.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
18.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
18.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
18.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
18.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
18.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
18.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
18.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
18.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
17.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
17.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
17.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
17.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
17.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
17.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
17.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
17.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
17.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
16.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
16.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
16.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
16.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
16.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
16.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
16.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
16.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
16.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
16.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
16.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
16.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
16.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
16.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
16.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
15.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
15.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
15.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
15.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
15.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
15.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
15.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
15.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
15.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
15.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
14.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
14.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
14.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
14.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
14.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
14.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
14.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
14.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
14.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
14.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
13.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
13.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
13.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
13.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
13.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
12.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
12.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
11.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
11.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
11.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
10.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
10.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
9.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
7.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
411
Tumor
1.5
473
Tumor
1.3
537
Tumor
1.1
1041
Tumor
1.1
557
Tumor
1.0
227
Tumor
1.0
865
Tumor
0.9
533
Tumor
0.9
967
Tumor
0.9
957
Tumor
0.9
741
Tumor
0.9
477
Tumor
0.9
553
Tumor
0.9
435
Tumor
0.8
571
Tumor
0.8
363
Tumor
0.8
231
Tumor
0.8
361
Tumor
0.7
393
Tumor
0.7
123
Tumor
0.7
221
Tumor
0.6
525
Tumor
0.6
745
Tumor
0.6
171
Tumor
0.6
357
Tumor
0.6
915
Tumor
0.6
267
Tumor
0.6
713
Tumor
0.6
965
Tumor
0.6
327
Tumor
0.6
567
Tumor
0.5
953
Tumor
0.5
663
Tumor
0.5
883
Tumor
0.5
351
Tumor
0.5
685
Tumor
0.5
367
Tumor
0.5
695
Tumor
0.5
423
Tumor
0.5
387
Tumor
0.5
861
Tumor
0.5
951
Tumor
0.5
127
Tumor
0.5
465
Tumor
0.4
513
Tumor
0.4
755
Tumor
0.4
1031
Tumor
0.4
665
Tumor
0.4
257
Tumor
0.4
147
Tumor
0.4
743
Tumor
0.4
427
Tumor
0.4
911
Tumor
0.4
365
Tumor
0.4
355
Tumor
0.4
1021
Tumor
0.4
823
Tumor
0.4
641
Tumor
0.4
145
Tumor
0.4
261
Tumor
0.4
391
Tumor
0.4
937
Tumor
0.3
715
Tumor
0.3
877
Tumor
0.3
467
Tumor
0.3
463
Tumor
0.3
517
Tumor
0.3
191
Tumor
0.3
271
Tumor
0.3
724
Normal
0.3
514
Normal
0.3
277
Tumor
0.3
195
Tumor
0.3
395
Tumor
0.3
635
Tumor
0.3
223
Tumor
0.3
471
Tumor
0.3
963
Tumor
0.3
1025
Tumor
0.3
913
Tumor
0.3
353
Tumor
0.2
1013
Tumor
0.2
331
Tumor
0.2
131
Tumor
0.2
385
Tumor
0.2
285
Tumor
0.2
483
Tumor
0.2
738
Normal
0.2
727
Tumor
0.2
867
Tumor
0.2
944
Normal
0.2
313
Tumor
0.2
923
Tumor
0.2
981
Tumor
0.2
433
Tumor
0.2
413
Tumor
0.2
573
Tumor
0.2
356
Normal
0.2
983
Tumor
0.2
112
Tumor
0.1
272
Normal
0.1
671
Tumor
0.1
925
Tumor
0.1
728
Normal
0.1
977
Tumor
0.1
817
Tumor
0.1
938
Normal
0.1
187
Tumor
0.1
474
Normal
0.1
647
Tumor
0.1
534
Normal
0.1
431
Tumor
0.1
148
Normal
0.1
572
Normal
0.1
375
Tumor
0.1
535
Tumor
0.1
777
Tumor
0.1
113
Tumor
0.1
926
Normal
0.1
881
Tumor
0.1
523
Tumor
0.1
213
Tumor
0.1
851
Tumor
0.1
1032
Normal
0.1
723
Tumor
0.1
964
Normal
0.1
497
Tumor
0.1
493
Tumor
0.0
161
Tumor
0.0
451
Tumor
0.0
436
Normal
0.0
516
Normal
0.0
696
Normal
0.0
873
Tumor
0.0
481
Tumor
0.0
196
Normal
0.0
341
Tumor
0.0
526
Normal
0.0
661
Tumor
0.0
328
Normal
0.0
358
Normal
0.0
528
Normal
0.0
742
Normal
0.0
258
Normal
0.0
868
Normal
0.0
954
Normal
0.0
916
Normal
0.0
128
Normal
0.0
564
Normal
0.0
388
Normal
0.0
721
Tumor
0.0
1042
Normal
0.0
416
Normal
0.0
958
Normal
0.0
956
Normal
0.0
616
Normal
0.0
546
Normal
0.0
617
Tumor
0.0
362
Normal
0.0
815
Tumor
0.0
228
Normal
0.0
114
Normal
0.0
1027
Tumor
0.0
462
Normal
0.0
466
Normal
0.0
862
Normal
-0.1
716
Normal
-0.1
297
Tumor
-0.1
914
Normal
-0.1
396
Normal
-0.1
648
Normal
-0.1
278
Normal
-0.1
162
Normal
-0.1
615
Tumor
-0.1
918
Normal
-0.1
232
Normal
-0.1
343
Tumor
-0.1
212
Normal
-0.1
491
Tumor
-0.1
132
Normal
-0.1
224
Normal
-0.1
664
Normal
-0.1
922
Normal
-0.1
364
Normal
-0.1
864
Normal
-0.1
978
Normal
-0.1
714
Normal
-0.1
136
Normal
-0.1
1022
Normal
-0.1
642
Normal
-0.1
722
Normal
-0.1
428
Normal
-0.1
662
Normal
-0.1
446
Normal
-0.1
756
Normal
-0.1
185
Tumor
-0.1
666
Normal
-0.1
432
Normal
-0.1
426
Normal
-0.1
1043
Tumor
-0.1
284
Normal
-0.1
1028
Normal
-0.1
188
Normal
-0.1
686
Normal
-0.1
975
Tumor
-0.2
366
Normal
-0.2
568
Normal
-0.2
628
Normal
-0.2
434
Normal
-0.2
952
Normal
-0.2
955
Tumor
-0.2
518
Normal
-0.2
111
Normal
-0.2
921
Tumor
-0.2
785
Tumor
-0.2
268
Normal
-0.2
126
Normal
-0.2
386
Normal
-0.2
1014
Normal
-0.2
286
Normal
-0.2
482
Normal
-0.2
172
Normal
-0.2
866
Normal
-0.2
558
Normal
-0.2
262
Normal
-0.2
1026
Normal
-0.2
472
Normal
-0.2
312
Normal
-0.2
816
Normal
-0.2
412
Normal
-0.2
1016
Normal
-0.2
982
Normal
-0.2
478
Normal
-0.2
414
Normal
-0.2
376
Normal
-0.2
222
Normal
-0.2
618
Normal
-0.2
214
Normal
-0.2
574
Normal
-0.2
394
Normal
-0.2
858
Normal
-0.2
124
Normal
-0.2
415
Tumor
-0.2
447
Tumor
-0.2
527
Tumor
-0.2
392
Normal
-0.2
778
Normal
-0.2
424
Normal
-0.2
314
Normal
-0.2
878
Normal
-0.3
746
Normal
-0.3
135
Tumor
-0.3
422
Normal
-0.3
1046
Normal
-0.3
672
Normal
-0.3
311
Tumor
-0.3
141
Tumor
-0.3
824
Normal
-0.3
464
Normal
-0.3
554
Normal
-0.3
342
Normal
-0.3
142
Normal
-0.3
912
Normal
-0.3
298
Normal
-0.3
563
Tumor
-0.3
697
Tumor
-0.3
882
Normal
-0.3
455
Tumor
-0.3
186
Normal
-0.3
384
Normal
-0.3
283
Tumor
-0.3
352
Normal
-0.3
452
Normal
-0.3
737
Tumor
-0.3
524
Normal
-0.3
1015
Tumor
-0.3
456
Normal
-0.3
217
Tumor
-0.3
211
Tumor
-0.4
444
Normal
-0.4
468
Normal
-0.4
448
Normal
-0.4
943
Tumor
-0.4
445
Tumor
-0.4
125
Tumor
-0.4
874
Normal
-0.4
461
Tumor
-0.4
344
Normal
-0.4
917
Tumor
-0.4
484
Normal
-0.4
138
Normal
-0.4
976
Normal
-0.4
137
Tumor
-0.4
488
Normal
-0.4
924
Normal
-0.4
354
Normal
-0.4
1045
Tumor
-0.4
146
Normal
-0.4
857
Tumor
-0.4
487
Tumor
-0.4
218
Normal
-0.5
1044
Normal
-0.5
494
Normal
-0.5
884
Normal
-0.5
515
Tumor
-0.5
383
Tumor
-0.5
636
Normal
-0.5
192
Normal
-0.5
984
Normal
-0.5
786
Normal
-0.5
421
Tumor
-0.5
968
Normal
-0.5
538
Normal
-0.5
698
Normal
-0.5
368
Normal
-0.5
814
Normal
-0.5
545
Tumor
-0.6
744
Normal
-0.6
443
Tumor
-0.6
627
Tumor
-0.6
332
Normal
-0.6
818
Normal
-0.6
425
Tumor
-0.6
966
Normal
-0.6
498
Normal
-0.7
813
Tumor
-0.7
852
Normal
-0.7
492
Normal
-0.7
863
Tumor
-0.7
536
Normal
-0.9
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
