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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UBA7 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
60.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
43.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
39.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
35.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
34.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
34.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
33.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
32.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
32.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
31.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
31.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
31.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
31.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
29.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
29.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
28.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
27.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
27.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
27.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
27.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
26.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
26.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
26.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
26.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
26.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
25.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
25.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
25.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
25.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
25.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
25.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
25.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
25.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
24.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
24.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
24.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
24.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
24.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
24.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
23.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
23.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
23.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
23.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
23.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
23.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
22.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
22.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
22.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
22.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
22.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
22.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
22.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
21.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
21.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
20.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
20.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
20.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
20.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
20.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
20.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
20.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
20.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
20.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
20.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
20.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
19.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
19.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
19.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
19.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
19.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
19.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
19.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
18.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
18.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
18.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
18.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
18.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
18.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
18.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
18.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
18.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
18.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
18.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
18.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
17.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
17.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
17.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
17.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
17.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
17.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
17.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
17.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
17.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
17.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
17.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
17.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
17.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
17.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
17.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
17.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
16.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
16.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
16.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
16.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
16.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
16.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
16.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
16.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
16.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
16.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
16.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
16.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
15.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
15.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
15.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
15.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
15.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
15.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
15.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
15.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
15.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
15.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
15.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
15.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
15.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
15.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
15.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
14.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
14.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
14.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
14.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
14.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
14.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
14.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
14.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
14.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
14.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
14.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
14.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
14.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
14.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
14.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
14.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
14.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
14.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
14.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
13.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
13.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
13.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
13.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
13.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
13.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
13.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
13.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
13.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
13.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
13.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
13.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
13.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
13.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
13.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
13.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
13.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
12.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
12.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
12.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
12.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
12.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
12.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
12.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
12.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
12.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
12.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
12.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
12.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
12.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
12.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
12.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
12.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
12.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
12.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
12.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
11.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
11.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
11.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
11.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
11.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
11.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
11.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
11.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
11.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
11.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
11.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
11.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
11.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
11.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
11.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
11.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
11.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
11.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
11.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
10.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
10.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
10.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
10.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
10.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
10.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
10.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
10.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
10.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
10.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
10.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
10.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
10.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
10.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
10.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
10.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
10.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
10.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
9.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
9.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
9.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
9.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
9.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
9.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
9.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
9.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
9.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
9.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
9.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
9.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
9.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
9.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
9.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
9.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
9.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
9.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
9.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
9.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
9.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
8.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
8.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
8.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
8.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
8.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
8.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
8.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
8.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
8.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
8.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
8.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
8.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
8.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
8.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
8.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
8.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
8.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
8.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
8.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
8.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
8.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
8.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
7.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
7.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
7.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
7.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
7.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
7.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
7.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
7.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
7.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
7.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
7.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
7.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
6.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
6.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
6.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
6.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
6.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
6.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
6.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
6.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
6.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
6.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
6.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
6.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
6.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
6.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
6.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
5.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
5.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
5.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
5.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
5.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
5.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
5.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
5.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
5.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
4.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
4.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
4.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
4.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
4.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
3.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
3.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
2.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
2.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
2.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
2.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
1.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UBA7 is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.1
Number of samples
231
Samples
Sample
Description
TPM
DO23512
0 years, male, NA, stage:1, alive, 1260 days
62.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
58.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
56.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
51.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
50.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
45.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
43.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
43.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
42.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
42.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
41.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
41.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
40.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
40.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
39.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
37.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
35.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
35.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
35.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
34.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
34.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
34.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
34.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
33.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
32.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
31.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
31.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
30.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
30.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
30.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
30.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
29.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
29.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
29.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
29.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
28.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
28.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
28.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
28.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
28.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
27.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
27.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
27.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
27.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
26.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
26.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
26.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
26.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
26.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
26.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
26.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
25.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
25.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
25.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
25.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
25.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
25.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
25.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
25.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
25.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
24.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
24.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
24.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
24.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
24.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
24.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
23.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
23.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
23.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
23.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
23.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
23.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
23.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
22.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
22.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
22.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
22.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
22.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
22.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
22.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
22.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
22.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
22.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
22.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
22.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
21.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
21.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
21.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
21.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
21.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
20.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
20.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
20.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
20.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
20.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
20.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
20.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
20.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
20.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
20.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
20.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
19.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
19.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
19.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
19.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
19.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
19.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
19.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
19.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
19.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
18.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
18.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
18.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
18.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
18.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
18.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
18.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
18.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
18.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
18.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
18.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
18.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
17.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
17.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
17.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
17.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
17.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
17.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
17.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
17.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
17.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
17.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
16.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
16.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
16.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
16.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
16.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
16.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
16.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
16.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
16.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
15.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
15.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
15.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
15.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
15.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
15.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
15.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
15.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
15.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
15.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
15.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
15.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
15.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
15.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
14.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
14.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
14.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
14.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
14.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
14.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
14.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
14.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
14.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
14.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
14.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
14.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
13.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
13.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
13.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
13.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
13.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
13.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
13.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
13.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
12.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
12.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
12.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
12.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
12.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
12.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
12.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
12.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
12.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
12.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
12.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
12.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
11.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
11.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
11.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
11.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
11.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
11.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
11.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
10.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
10.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
10.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
10.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
10.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
9.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
9.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
9.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
9.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
9.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
9.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
9.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
9.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
8.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
8.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
8.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
8.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
8.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
6.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
6.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
6.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
5.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
5.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
4.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
4.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
3.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
2.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
2.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
2.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
2.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
2.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
2.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
113
Tumor
0.9
341
Tumor
0.7
416
Normal
0.6
883
Tumor
0.6
955
Tumor
0.6
188
Normal
0.6
262
Normal
0.6
311
Tumor
0.5
563
Tumor
0.5
137
Tumor
0.5
195
Tumor
0.5
647
Tumor
0.5
737
Tumor
0.5
1043
Tumor
0.5
126
Normal
0.5
141
Tumor
0.5
393
Tumor
0.5
358
Normal
0.4
727
Tumor
0.4
914
Normal
0.4
386
Normal
0.4
513
Tumor
0.4
1015
Tumor
0.4
366
Normal
0.4
884
Normal
0.4
1045
Tumor
0.4
214
Normal
0.4
467
Tumor
0.4
353
Tumor
0.4
865
Tumor
0.4
432
Normal
0.4
951
Tumor
0.4
272
Normal
0.4
136
Normal
0.4
221
Tumor
0.4
978
Normal
0.4
213
Tumor
0.4
617
Tumor
0.4
114
Normal
0.4
436
Normal
0.4
365
Tumor
0.4
138
Normal
0.4
814
Normal
0.4
956
Normal
0.4
187
Tumor
0.3
146
Normal
0.3
128
Normal
0.3
456
Normal
0.3
461
Tumor
0.3
755
Tumor
0.3
627
Tumor
0.3
362
Normal
0.3
443
Tumor
0.3
966
Normal
0.3
111
Normal
0.3
132
Normal
0.3
662
Normal
0.3
628
Normal
0.3
615
Tumor
0.3
387
Tumor
0.3
434
Normal
0.3
663
Tumor
0.3
421
Tumor
0.3
223
Tumor
0.3
428
Normal
0.3
455
Tumor
0.3
857
Tumor
0.3
648
Normal
0.3
558
Normal
0.3
446
Normal
0.3
383
Tumor
0.3
212
Normal
0.3
616
Normal
0.3
477
Tumor
0.3
422
Normal
0.3
185
Tumor
0.3
258
Normal
0.3
721
Tumor
0.3
452
Normal
0.3
813
Tumor
0.3
514
Normal
0.2
161
Tumor
0.2
414
Normal
0.2
268
Normal
0.2
196
Normal
0.2
468
Normal
0.2
664
Normal
0.2
568
Normal
0.2
344
Normal
0.2
312
Normal
0.2
742
Normal
0.2
863
Tumor
0.2
915
Tumor
0.2
1042
Normal
0.2
515
Tumor
0.2
516
Normal
0.2
862
Normal
0.2
917
Tumor
0.2
642
Normal
0.2
284
Normal
0.2
426
Normal
0.2
1044
Normal
0.2
564
Normal
0.2
523
Tumor
0.2
261
Tumor
0.2
1016
Normal
0.2
391
Tumor
0.2
723
Tumor
0.2
376
Normal
0.2
572
Normal
0.2
384
Normal
0.2
357
Tumor
0.2
952
Normal
0.2
396
Normal
0.2
218
Normal
0.2
388
Normal
0.2
858
Normal
0.2
481
Tumor
0.2
738
Normal
0.2
728
Normal
0.2
352
Normal
0.2
286
Normal
0.2
342
Normal
0.2
756
Normal
0.2
464
Normal
0.2
925
Tumor
0.2
124
Normal
0.2
882
Normal
0.2
778
Normal
0.2
361
Tumor
0.1
1022
Normal
0.1
186
Normal
0.1
525
Tumor
0.1
445
Tumor
0.1
172
Normal
0.1
824
Normal
0.1
716
Normal
0.1
297
Tumor
0.1
394
Normal
0.1
424
Normal
0.1
982
Normal
0.1
162
Normal
0.1
222
Normal
0.1
786
Normal
0.1
618
Normal
0.1
267
Tumor
0.1
232
Normal
0.1
228
Normal
0.1
926
Normal
0.1
224
Normal
0.1
192
Normal
0.1
874
Normal
0.1
724
Normal
0.1
937
Tumor
0.1
916
Normal
0.1
1046
Normal
0.1
448
Normal
0.1
482
Normal
0.1
873
Tumor
0.1
466
Normal
0.1
641
Tumor
0.1
392
Normal
0.1
864
Normal
0.1
528
Normal
0.1
278
Normal
0.1
356
Normal
0.1
818
Normal
0.1
142
Normal
0.1
298
Normal
0.1
666
Normal
0.1
636
Normal
0.1
148
Normal
0.1
852
Normal
0.1
433
Tumor
0.1
913
Tumor
0.1
866
Normal
0.1
354
Normal
0.1
364
Normal
0.1
462
Normal
0.1
557
Tumor
0.1
944
Normal
0.1
964
Normal
0.0
328
Normal
0.0
533
Tumor
0.0
145
Tumor
0.0
878
Normal
0.0
314
Normal
0.0
332
Normal
0.0
536
Normal
0.0
474
Normal
0.0
924
Normal
0.0
171
Tumor
0.0
672
Normal
0.0
444
Normal
0.0
698
Normal
0.0
127
Tumor
0.0
217
Tumor
0.0
412
Normal
0.0
524
Normal
0.0
498
Normal
0.0
744
Normal
0.0
1014
Normal
0.0
526
Normal
0.0
938
Normal
0.0
984
Normal
0.0
518
Normal
0.0
722
Normal
0.0
546
Normal
0.0
494
Normal
0.0
368
Normal
0.0
125
Tumor
0.0
472
Normal
0.0
415
Tumor
0.0
635
Tumor
0.0
492
Normal
0.0
423
Tumor
0.0
714
Normal
0.0
147
Tumor
0.0
343
Tumor
0.0
696
Normal
0.0
191
Tumor
0.0
567
Tumor
0.0
553
Tumor
-0.1
957
Tumor
-0.1
534
Normal
-0.1
135
Tumor
-0.1
861
Tumor
-0.1
211
Tumor
-0.1
478
Normal
-0.1
554
Normal
-0.1
911
Tumor
-0.1
487
Tumor
-0.1
918
Normal
-0.1
465
Tumor
-0.1
451
Tumor
-0.1
715
Tumor
-0.1
1032
Normal
-0.1
954
Normal
-0.1
868
Normal
-0.1
983
Tumor
-0.1
981
Tumor
-0.1
777
Tumor
-0.1
816
Normal
-0.1
484
Normal
-0.1
686
Normal
-0.1
881
Tumor
-0.1
257
Tumor
-0.1
112
Tumor
-0.1
1031
Tumor
-0.1
283
Tumor
-0.1
867
Tumor
-0.1
785
Tumor
-0.2
968
Normal
-0.2
958
Normal
-0.2
327
Tumor
-0.2
823
Tumor
-0.2
912
Normal
-0.2
1028
Normal
-0.2
435
Tumor
-0.2
922
Normal
-0.2
1041
Tumor
-0.2
661
Tumor
-0.2
741
Tumor
-0.2
963
Tumor
-0.2
488
Normal
-0.2
277
Tumor
-0.2
538
Normal
-0.2
471
Tumor
-0.2
123
Tumor
-0.2
395
Tumor
-0.2
413
Tumor
-0.2
745
Tumor
-0.2
535
Tumor
-0.2
231
Tumor
-0.3
527
Tumor
-0.3
943
Tumor
-0.3
271
Tumor
-0.3
431
Tumor
-0.3
665
Tumor
-0.3
375
Tumor
-0.3
447
Tumor
-0.3
517
Tumor
-0.3
1026
Normal
-0.3
367
Tumor
-0.3
385
Tumor
-0.3
953
Tumor
-0.3
574
Normal
-0.3
923
Tumor
-0.3
493
Tumor
-0.4
695
Tumor
-0.4
537
Tumor
-0.4
491
Tumor
-0.4
411
Tumor
-0.4
1025
Tumor
-0.4
851
Tumor
-0.4
463
Tumor
-0.4
1013
Tumor
-0.4
427
Tumor
-0.4
355
Tumor
-0.4
746
Normal
-0.4
977
Tumor
-0.5
921
Tumor
-0.5
473
Tumor
-0.5
965
Tumor
-0.5
285
Tumor
-0.5
671
Tumor
-0.5
313
Tumor
-0.6
497
Tumor
-0.6
483
Tumor
-0.6
713
Tumor
-0.6
976
Normal
-0.6
697
Tumor
-0.6
425
Tumor
-0.7
877
Tumor
-0.7
975
Tumor
-0.7
363
Tumor
-0.7
1021
Tumor
-0.7
545
Tumor
-0.7
685
Tumor
-0.8
227
Tumor
-0.8
573
Tumor
-0.9
351
Tumor
-0.9
817
Tumor
-0.9
331
Tumor
-0.9
571
Tumor
-0.9
967
Tumor
-1.0
815
Tumor
-1.0
1027
Tumor
-1.1
131
Tumor
-1.1
743
Tumor
-1.4
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
