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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
YIPF6 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
46.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
37.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
24.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
23.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
23.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
22.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
19.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
18.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
18.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
18.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
18.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
18.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
17.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
16.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
16.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
16.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
16.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
16.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
15.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
15.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
15.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
15.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
15.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
15.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
15.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
15.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
14.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
14.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
14.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
14.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
14.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
14.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
14.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
14.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
13.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
13.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
13.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
13.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
13.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
13.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
13.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
13.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
13.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
13.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
13.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
13.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
13.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
13.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
13.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
13.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
12.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
12.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
12.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
12.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
12.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
12.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
12.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
12.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
12.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
12.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
12.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
12.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
12.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
12.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
12.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
12.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
12.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
12.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
12.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
11.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
11.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
11.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
11.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
11.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
11.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
11.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
11.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
11.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
11.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
11.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
11.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
11.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
11.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
11.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
10.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
10.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
10.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
10.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
10.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
10.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
10.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
10.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
10.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
10.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
10.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
10.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
10.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
10.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
10.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
10.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
10.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
10.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
10.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
9.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
9.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
9.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
9.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
9.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
9.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
9.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
9.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
9.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
9.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
9.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
9.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
9.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
9.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
9.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
9.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
9.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
9.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
9.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
9.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
9.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
9.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
9.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
9.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
9.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
9.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
9.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
9.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
8.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
8.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
8.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
8.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
8.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
8.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
8.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
8.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
8.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
8.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
8.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
8.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
8.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
8.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
8.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
8.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
8.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
8.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
8.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
8.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
8.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
8.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
8.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
8.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
8.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
8.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
8.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
8.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
8.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
8.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
8.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
8.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
7.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
7.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
7.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
7.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
7.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
7.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
7.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
7.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
7.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
7.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
7.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
7.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
7.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
7.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
7.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
7.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
7.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
7.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
7.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
7.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
7.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
7.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
7.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
7.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
7.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
7.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
6.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
6.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
6.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
6.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
6.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
6.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
6.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
6.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
6.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
6.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
6.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
6.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
6.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
6.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
6.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
6.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
6.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
6.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
6.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
6.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
6.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
6.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
6.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
6.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
6.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
6.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
6.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
6.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
5.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
5.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
5.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
5.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
5.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
5.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
5.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
5.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
5.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
5.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
5.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
5.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
5.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
5.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
5.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
5.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
4.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
4.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
4.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
4.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
3.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
2.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
YIPF6 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.1
Number of samples
231
Samples
Sample
Description
TPM
DO45275
0 years, male, NA, stage:3, dead, 10 days
24.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
21.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
20.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
19.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
17.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
17.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
17.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
17.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
16.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
16.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
15.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
15.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
15.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
15.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
15.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
15.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
14.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
14.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
14.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
14.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
14.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
14.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
13.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
13.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
13.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
13.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
13.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
13.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
13.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
12.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
12.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
12.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
12.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
12.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
12.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
12.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
12.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
12.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
12.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
12.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
12.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
11.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
11.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
11.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
11.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
11.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
11.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
11.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
11.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
11.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
11.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
11.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
11.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
11.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
10.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
10.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
10.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
10.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
10.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
10.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
10.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
10.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
10.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
10.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
10.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
10.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
10.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
10.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
10.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
10.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
10.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
10.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
9.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
9.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
9.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
9.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
9.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
9.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
9.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
9.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
9.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
9.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
9.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
9.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
9.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
9.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
9.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
9.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
9.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
9.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
9.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
9.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
9.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
9.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
9.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
9.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
9.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
9.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
8.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
8.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
8.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
8.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
8.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
8.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
8.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
8.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
8.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
8.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
8.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
8.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
8.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
8.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
8.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
8.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
8.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
8.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
8.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
8.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
8.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
8.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
8.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
8.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
8.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
8.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
8.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
7.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
7.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
7.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
7.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
7.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
7.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
7.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
7.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
7.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
7.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
7.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
7.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
7.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
7.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
7.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
7.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
7.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
7.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
7.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
7.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
7.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
7.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
7.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
7.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
7.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
7.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
7.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
7.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
7.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
7.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
6.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
6.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
6.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
6.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
6.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
6.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
6.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
6.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
6.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
6.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
6.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
6.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
6.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
6.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
6.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
6.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
6.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
5.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
5.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
5.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
5.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
5.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
5.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
5.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
5.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
5.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
5.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
5.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
5.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
5.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
5.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
4.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
4.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
4.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
4.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
4.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
4.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
4.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
4.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
3.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
685
Tumor
1.5
635
Tumor
1.4
641
Tumor
1.4
473
Tumor
1.3
697
Tumor
1.2
123
Tumor
1.2
777
Tumor
1.2
965
Tumor
1.2
471
Tumor
1.2
1027
Tumor
1.2
1021
Tumor
1.2
951
Tumor
1.1
395
Tumor
1.1
445
Tumor
1.1
925
Tumor
1.0
393
Tumor
1.0
341
Tumor
1.0
525
Tumor
0.9
1031
Tumor
0.9
647
Tumor
0.9
443
Tumor
0.9
1025
Tumor
0.9
112
Tumor
0.9
745
Tumor
0.9
615
Tumor
0.9
277
Tumor
0.9
617
Tumor
0.9
171
Tumor
0.9
285
Tumor
0.8
367
Tumor
0.8
724
Normal
0.8
351
Tumor
0.8
557
Tumor
0.8
921
Tumor
0.8
113
Tumor
0.8
851
Tumor
0.8
546
Normal
0.8
431
Tumor
0.8
937
Tumor
0.8
433
Tumor
0.8
1013
Tumor
0.8
451
Tumor
0.7
815
Tumor
0.7
627
Tumor
0.7
1015
Tumor
0.7
257
Tumor
0.7
231
Tumor
0.7
1041
Tumor
0.7
665
Tumor
0.6
741
Tumor
0.6
427
Tumor
0.6
957
Tumor
0.6
387
Tumor
0.6
642
Normal
0.6
125
Tumor
0.6
963
Tumor
0.6
713
Tumor
0.6
477
Tumor
0.6
271
Tumor
0.6
413
Tumor
0.6
911
Tumor
0.6
983
Tumor
0.6
223
Tumor
0.6
913
Tumor
0.5
515
Tumor
0.5
917
Tumor
0.5
573
Tumor
0.5
435
Tumor
0.5
567
Tumor
0.5
147
Tumor
0.5
857
Tumor
0.5
1045
Tumor
0.5
127
Tumor
0.5
327
Tumor
0.5
977
Tumor
0.5
727
Tumor
0.5
227
Tumor
0.5
534
Normal
0.5
221
Tumor
0.4
218
Normal
0.4
217
Tumor
0.4
383
Tumor
0.4
343
Tumor
0.4
817
Tumor
0.4
385
Tumor
0.4
483
Tumor
0.4
357
Tumor
0.4
861
Tumor
0.4
636
Normal
0.4
785
Tumor
0.4
863
Tumor
0.4
415
Tumor
0.4
124
Normal
0.3
375
Tumor
0.3
135
Tumor
0.3
391
Tumor
0.3
513
Tumor
0.3
465
Tumor
0.3
331
Tumor
0.3
361
Tumor
0.3
721
Tumor
0.3
873
Tumor
0.3
268
Normal
0.3
823
Tumor
0.3
571
Tumor
0.3
421
Tumor
0.3
425
Tumor
0.3
661
Tumor
0.3
267
Tumor
0.3
191
Tumor
0.3
616
Normal
0.3
145
Tumor
0.3
411
Tumor
0.3
313
Tumor
0.3
915
Tumor
0.3
481
Tumor
0.3
715
Tumor
0.2
628
Normal
0.2
487
Tumor
0.2
232
Normal
0.2
968
Normal
0.2
536
Normal
0.2
671
Tumor
0.2
258
Normal
0.2
185
Tumor
0.2
467
Tumor
0.2
344
Normal
0.2
698
Normal
0.2
981
Tumor
0.2
365
Tumor
0.2
462
Normal
0.2
923
Tumor
0.2
618
Normal
0.2
187
Tumor
0.2
883
Tumor
0.2
491
Tumor
0.2
488
Normal
0.2
967
Tumor
0.2
195
Tumor
0.1
955
Tumor
0.1
528
Normal
0.1
262
Normal
0.1
755
Tumor
0.1
272
Normal
0.1
493
Tumor
0.1
447
Tumor
0.1
461
Tumor
0.1
126
Normal
0.1
813
Tumor
0.1
865
Tumor
0.1
563
Tumor
0.1
523
Tumor
0.1
448
Normal
0.1
444
Normal
0.1
881
Tumor
0.1
535
Tumor
0.1
463
Tumor
0.1
456
Normal
0.1
482
Normal
0.1
663
Tumor
0.1
311
Tumor
0.1
224
Normal
0.1
355
Tumor
0.0
423
Tumor
0.0
432
Normal
0.0
213
Tumor
0.0
297
Tumor
0.0
353
Tumor
0.0
261
Tumor
0.0
384
Normal
0.0
114
Normal
0.0
1043
Tumor
0.0
386
Normal
0.0
975
Tumor
0.0
484
Normal
0.0
342
Normal
0.0
874
Normal
0.0
958
Normal
0.0
111
Normal
0.0
918
Normal
0.0
228
Normal
0.0
132
Normal
0.0
984
Normal
0.0
478
Normal
0.0
964
Normal
0.0
137
Tumor
0.0
222
Normal
0.0
136
Normal
0.0
648
Normal
0.0
524
Normal
0.0
868
Normal
0.0
363
Tumor
0.0
952
Normal
-0.1
737
Tumor
-0.1
572
Normal
-0.1
396
Normal
-0.1
943
Tumor
-0.1
497
Tumor
-0.1
464
Normal
-0.1
728
Normal
-0.1
314
Normal
-0.1
474
Normal
-0.1
944
Normal
-0.1
141
Tumor
-0.1
916
Normal
-0.1
446
Normal
-0.1
138
Normal
-0.1
188
Normal
-0.1
662
Normal
-0.1
738
Normal
-0.1
672
Normal
-0.1
434
Normal
-0.1
568
Normal
-0.1
953
Tumor
-0.1
214
Normal
-0.1
1044
Normal
-0.1
148
Normal
-0.1
162
Normal
-0.1
664
Normal
-0.1
455
Tumor
-0.1
1032
Normal
-0.1
362
Normal
-0.1
498
Normal
-0.1
416
Normal
-0.1
867
Tumor
-0.1
574
Normal
-0.1
494
Normal
-0.2
172
Normal
-0.2
376
Normal
-0.2
392
Normal
-0.2
298
Normal
-0.2
1028
Normal
-0.2
332
Normal
-0.2
956
Normal
-0.2
436
Normal
-0.2
1042
Normal
-0.2
714
Normal
-0.2
422
Normal
-0.2
131
Tumor
-0.2
424
Normal
-0.2
492
Normal
-0.2
564
Normal
-0.2
666
Normal
-0.2
278
Normal
-0.2
142
Normal
-0.2
966
Normal
-0.2
212
Normal
-0.2
1014
Normal
-0.2
862
Normal
-0.2
354
Normal
-0.2
352
Normal
-0.2
284
Normal
-0.2
938
Normal
-0.2
388
Normal
-0.2
428
Normal
-0.2
778
Normal
-0.2
192
Normal
-0.2
558
Normal
-0.2
1016
Normal
-0.2
1026
Normal
-0.2
358
Normal
-0.2
866
Normal
-0.2
452
Normal
-0.2
514
Normal
-0.2
426
Normal
-0.2
412
Normal
-0.3
722
Normal
-0.3
186
Normal
-0.3
146
Normal
-0.3
468
Normal
-0.3
852
Normal
-0.3
161
Tumor
-0.3
686
Normal
-0.3
518
Normal
-0.3
696
Normal
-0.3
466
Normal
-0.3
978
Normal
-0.3
196
Normal
-0.3
1022
Normal
-0.3
312
Normal
-0.3
283
Tumor
-0.3
814
Normal
-0.3
922
Normal
-0.3
366
Normal
-0.3
394
Normal
-0.3
538
Normal
-0.3
864
Normal
-0.3
816
Normal
-0.3
723
Tumor
-0.3
526
Normal
-0.3
286
Normal
-0.3
858
Normal
-0.4
414
Normal
-0.4
128
Normal
-0.4
368
Normal
-0.4
472
Normal
-0.4
976
Normal
-0.4
328
Normal
-0.4
924
Normal
-0.4
824
Normal
-0.4
926
Normal
-0.4
211
Tumor
-0.4
716
Normal
-0.4
982
Normal
-0.4
1046
Normal
-0.5
356
Normal
-0.5
364
Normal
-0.5
954
Normal
-0.5
884
Normal
-0.5
744
Normal
-0.5
517
Tumor
-0.6
756
Normal
-0.6
527
Tumor
-0.6
743
Tumor
-0.6
695
Tumor
-0.6
516
Normal
-0.6
786
Normal
-0.7
742
Normal
-0.7
878
Normal
-0.7
746
Normal
-0.7
818
Normal
-0.8
882
Normal
-0.8
912
Normal
-0.8
914
Normal
-1.0
553
Tumor
-1.2
877
Tumor
-1.3
533
Tumor
-1.4
545
Tumor
-1.4
554
Normal
-1.5
537
Tumor
-1.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
