MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:26.3 nTPM
HPA Brain:30.7 nTPM
GTEx:26.3 nTPM
FANTOM5:58.4 Scaled Tags Per Million
Pig:10.1 nTPM
Mouse:55.6 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 30.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.9
2019 Male, age 18, unknown 30.9
1827 Male, age 72, unknown 27.9
2828 Female, age 72, unknown 27.4
2411 Female, age 72, unknown 27.0
1870 Female, age 42, unknown 26.3
2666 Male, age 74, left hemisphere 23.5
1830 Male, age 51, unknown 23.1
1833 Male, age 53, unknown 22.5
2586 Male, age 75, left hemisphere 21.5
2219 Male, age 76, both hemispheres 19.0
Dorsal raphe nucleus
nTPM: 25.7
2298 Female, age 72, unknown 32.0
2750 Male, age 76, both hemispheres 26.0
2047 Male, age 72, unknown 25.1
1828 Male, age 53, unknown 23.8
2016 Female, age 72, unknown 21.5
Inferior colliculus
nTPM: 23.2
2097 Female, age 72, unknown 26.8
1890 Male, age 53, unknown 25.4
1848 Female, age 42, unknown 21.4
2849 Male, age 72, unknown 19.1
Median raphe nucleus
nTPM: 24.3
2220 Male, age 76, midline 24.3
Periaquaductal grey, anterior
nTPM: 25.4
2502 Female, age 75, unknown 27.3
1947 Male, age 18, unknown 26.4
1795 Male, age 51, unknown 22.7
Periaquaductal grey, dorsal
nTPM: 22.1
1840 Male, age 53, unknown 25.5
1831 Male, age 72, unknown 23.5
2464 Female, age 72, unknown 19.9
2850 Male, age 76, both hemispheres 19.5
Periaquaductal grey, lateral
nTPM: 21.8
2272 Male, age 74, both hemispheres 24.0
2053 Male, age 18, unknown 22.3
2140 Male, age 76, both hemispheres 19.1
Pretectal area
nTPM: 26.2
1816 Male, age 51, unknown 31.3
1817 Female, age 42, unknown 30.7
2007 Male, age 72, unknown 29.9
1944 Female, age 72, unknown 29.1
2316 Male, age 76, right hemisphere 28.0
2273 Male, age 74, both hemispheres 25.9
2407 Male, age 75, both hemispheres 24.2
1815 Male, age 53, unknown 23.5
2224 Female, age 72, unknown 22.6
2825 Male, age 18, unknown 22.1
2667 Female, age 75, unknown 20.4
Red nucleus
nTPM: 24.5
2725 Female, age 75, unknown 30.5
1821 Female, age 72, unknown 26.9
2785 Male, age 18, unknown 24.8
2588 Male, age 74, left hemisphere 24.4
2769 Male, age 72, unknown 24.3
1865 Male, age 51, unknown 24.0
2503 Female, age 72, unknown 23.9
2823 Male, age 76, right hemisphere 23.8
2227 Male, age 72, unknown 23.3
2584 Male, age 75, left hemisphere 23.3
1904 Male, age 53, unknown 23.1
1954 Female, age 42, unknown 22.1
Substantia nigra
nTPM: 30.7
1916 Female, age 42, unknown 40.8
2409 Female, age 72, unknown 35.5
1941 Male, age 53, unknown 34.5
1851 Male, age 51, unknown 33.5
2590 Female, age 75, unknown 31.1
2241 Male, age 72, unknown 30.6
1889 Female, age 72, unknown 29.2
2665 Male, age 74, both hemispheres 25.1
2699 Male, age 18, unknown 24.0
2583 Male, age 75, right hemisphere 23.2
Superior colliculus
nTPM: 24.3
2087 Female, age 72, unknown 30.3
2261 Male, age 18, unknown 26.4
1913 Female, age 42, unknown 24.6
1796 Male, age 53, unknown 24.5
1895 Male, age 76, right hemisphere 24.0
2664 Male, age 75, both hemispheres 23.8
2587 Male, age 74, left hemisphere 23.5
2668 Female, age 75, unknown 22.3
1995 Male, age 72, unknown 22.0
1839 Male, age 51, unknown 21.3
Ventral tegmental area
nTPM: 26.3
1915 Female, age 42, unknown 30.6
2410 Female, age 72, unknown 28.3
1942 Male, age 51, unknown 27.0
2218 Male, age 76, both hemispheres 24.6
2021 Male, age 53, unknown 24.2
2223 Female, age 72, unknown 22.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 26.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 26.3
Samples: 139

Max nTPM: 48.4
Min nTPM: 13.5
Std nTPM: 6.9
Median nTPM: 25.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 48.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 47.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 46.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 45.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 44.3
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 42.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 42.6
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 38.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 38.3
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 37.4
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 37.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 58.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 58.4
FF:10158-103A5 76 years, female 58.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 10.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 8.7
Samples: 4

Max nTPM: 9.9
Min nTPM: 7.3
Sample A Female 9.3
Sample B Female 7.3
Sample C Male 8.4
Sample D Male 9.9
Midbrain
nTPM: 10.1
Samples: 4

Max nTPM: 11.8
Min nTPM: 9.1
Sample A Female 11.8
Sample B Female 9.1
Sample C Male 9.2
Sample D Male 10.3
Periaqueductal gray
nTPM: 9.0
Samples: 3

Max nTPM: 9.4
Min nTPM: 8.3
Sample B Female 9.2
Sample C Male 9.4
Sample D Male 8.3
Superior colliculi
nTPM: 9.0
Samples: 4

Max nTPM: 10.1
Min nTPM: 7.2
Sample A Female 9.8
Sample B Female 7.2
Sample C Male 10.1
Sample D Male 8.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 55.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 55.6
Samples: 4

Max nTPM: 61.5
Min nTPM: 50.7
Sample A Male 61.5
Sample B Male 57.5
Sample C Female 50.7
Sample D Female 52.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
638706 Antisense, RP_040831_02_C04, Mouse strain C57BL/6J (56 days, male) 0.7

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