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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DHTKD1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
27.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
125.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
123.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
90.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
86.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
80.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
78.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
77.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
76.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
75.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
74.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
74.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
74.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
71.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
70.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
69.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
66.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
65.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
65.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
64.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
63.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
62.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
62.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
61.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
61.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
60.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
59.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
58.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
57.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
57.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
56.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
56.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
55.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
55.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
54.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
54.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
54.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
53.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
53.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
53.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
53.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
53.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
52.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
52.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
52.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
51.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
51.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
51.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
51.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
51.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
50.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
50.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
49.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
48.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
48.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
48.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
48.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
48.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
47.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
47.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
46.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
45.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
45.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
45.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
44.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
44.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
43.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
43.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
43.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
42.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
42.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
42.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
42.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
42.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
42.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
42.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
42.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
41.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
40.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
40.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
40.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
40.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
39.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
39.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
39.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
39.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
39.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
38.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
38.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
38.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
37.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
37.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
37.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
37.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
37.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
37.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
36.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
36.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
36.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
35.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
35.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
35.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
35.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
35.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
34.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
34.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
34.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
33.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
33.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
33.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
33.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
33.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
33.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
33.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
33.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
32.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
32.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
32.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
32.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
32.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
32.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
32.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
32.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
32.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
31.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
31.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
31.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
30.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
30.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
30.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
30.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
30.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
30.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
30.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
29.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
29.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
29.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
29.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
29.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
28.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
28.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
28.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
28.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
28.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
28.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
27.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
27.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
27.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
27.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
26.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
26.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
26.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
26.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
26.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
26.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
26.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
26.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
25.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
25.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
25.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
25.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
25.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
25.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
25.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
25.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
25.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
25.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
25.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
25.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
25.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
25.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
25.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
25.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
24.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
24.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
24.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
24.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
23.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
23.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
23.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
23.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
23.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
23.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
23.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
23.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
23.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
22.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
22.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
22.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
22.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
22.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
22.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
22.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
22.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
22.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
21.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
21.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
21.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
21.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
21.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
21.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
21.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
21.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
21.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
20.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
20.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
20.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
20.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
20.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
20.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
19.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
19.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
19.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
19.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
19.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
19.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
19.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
19.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
19.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
19.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
19.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
18.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
18.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
18.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
18.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
18.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
18.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
18.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
18.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
17.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
17.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
17.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
17.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
17.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
17.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
17.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
16.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
16.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
16.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
16.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
16.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
16.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
16.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
16.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
15.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
15.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
15.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
15.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
15.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
15.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
14.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
14.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
14.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
14.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
14.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
14.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
14.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
14.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
14.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
14.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
14.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
14.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
14.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
14.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
14.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
14.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
13.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
13.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
13.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
13.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
13.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
13.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
13.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
12.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
12.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
12.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
12.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
12.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
12.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
12.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
12.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
11.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
11.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
11.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
11.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
11.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
11.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
11.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
11.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
11.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
11.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
11.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
11.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
10.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
10.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
10.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
10.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
10.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
10.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
10.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
10.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
10.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
10.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
9.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
9.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
9.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
9.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
9.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
9.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
9.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
9.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
9.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
9.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
9.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
9.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
8.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
8.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
8.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
8.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
8.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
8.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
8.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
8.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
8.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
7.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
7.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
7.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
7.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
7.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
7.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
6.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
6.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
6.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
6.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
6.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
5.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
5.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
5.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
4.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
4.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
3.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
2.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DHTKD1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
30.4
Number of samples
231
Samples
Sample
Description
TPM
DO23509
0 years, male, NA, stage:3, dead, 780 days
109.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
98.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
95.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
94.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
93.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
91.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
87.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
80.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
79.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
79.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
78.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
78.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
67.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
67.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
65.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
61.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
61.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
60.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
60.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
58.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
57.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
56.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
55.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
55.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
53.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
53.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
53.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
52.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
52.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
50.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
50.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
50.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
50.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
49.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
49.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
46.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
46.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
46.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
45.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
45.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
44.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
44.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
44.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
44.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
43.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
43.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
43.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
42.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
42.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
42.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
42.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
41.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
41.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
41.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
41.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
41.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
41.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
40.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
40.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
39.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
39.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
38.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
38.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
38.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
38.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
38.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
38.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
37.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
37.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
37.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
37.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
36.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
36.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
36.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
36.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
35.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
35.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
35.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
35.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
34.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
34.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
33.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
33.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
33.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
33.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
33.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
32.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
32.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
31.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
31.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
31.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
30.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
30.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
30.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
30.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
30.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
30.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
30.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
30.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
29.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
29.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
29.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
29.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
29.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
29.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
29.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
29.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
28.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
28.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
28.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
28.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
27.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
27.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
27.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
27.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
27.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
27.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
26.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
26.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
25.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
25.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
25.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
25.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
25.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
25.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
24.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
24.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
24.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
24.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
24.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
23.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
23.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
23.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
23.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
23.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
22.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
22.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
22.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
22.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
22.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
22.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
22.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
22.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
22.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
22.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
21.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
21.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
20.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
20.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
20.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
20.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
19.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
19.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
19.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
19.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
19.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
19.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
19.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
19.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
19.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
18.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
18.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
18.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
18.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
18.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
17.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
17.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
17.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
16.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
16.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
16.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
15.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
15.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
15.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
15.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
15.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
15.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
15.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
14.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
14.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
14.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
14.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
14.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
13.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
13.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
13.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
12.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
12.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
12.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
11.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
10.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
10.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
10.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
10.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
10.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
10.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
10.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
9.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
9.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
9.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
9.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
9.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
8.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
7.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
7.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
7.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
7.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
7.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
7.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
7.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
7.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
7.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
7.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
7.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
6.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
6.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
6.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
6.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
6.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
5.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
5.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
5.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
5.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
4.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
4.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
4.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
3.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
3.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
2.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
465
Tumor
1.6
627
Tumor
1.3
466
Normal
1.0
742
Normal
1.0
636
Normal
0.9
314
Normal
0.9
128
Normal
0.9
1041
Tumor
0.9
924
Normal
0.8
981
Tumor
0.8
618
Normal
0.8
786
Normal
0.8
356
Normal
0.8
723
Tumor
0.8
938
Normal
0.8
741
Tumor
0.8
132
Normal
0.7
136
Normal
0.7
546
Normal
0.7
358
Normal
0.7
746
Normal
0.7
436
Normal
0.7
222
Normal
0.7
278
Normal
0.7
482
Normal
0.7
964
Normal
0.7
412
Normal
0.7
172
Normal
0.7
148
Normal
0.7
873
Tumor
0.7
426
Normal
0.7
1013
Tumor
0.7
354
Normal
0.7
738
Normal
0.7
648
Normal
0.7
443
Tumor
0.7
388
Normal
0.7
111
Normal
0.6
635
Tumor
0.6
186
Normal
0.6
376
Normal
0.6
298
Normal
0.6
428
Normal
0.6
114
Normal
0.6
414
Normal
0.6
422
Normal
0.6
984
Normal
0.6
714
Normal
0.6
452
Normal
0.6
258
Normal
0.6
472
Normal
0.6
756
Normal
0.6
1046
Normal
0.6
944
Normal
0.6
628
Normal
0.6
937
Tumor
0.6
554
Normal
0.5
925
Tumor
0.5
394
Normal
0.5
698
Normal
0.5
686
Normal
0.5
912
Normal
0.5
352
Normal
0.5
564
Normal
0.5
862
Normal
0.5
464
Normal
0.5
474
Normal
0.5
662
Normal
0.5
196
Normal
0.5
162
Normal
0.5
728
Normal
0.5
864
Normal
0.5
344
Normal
0.5
468
Normal
0.5
424
Normal
0.5
432
Normal
0.5
858
Normal
0.4
572
Normal
0.4
462
Normal
0.4
616
Normal
0.4
526
Normal
0.4
926
Normal
0.4
396
Normal
0.4
955
Tumor
0.4
518
Normal
0.4
778
Normal
0.4
487
Tumor
0.4
914
Normal
0.4
484
Normal
0.4
868
Normal
0.4
515
Tumor
0.4
272
Normal
0.4
534
Normal
0.4
423
Tumor
0.4
883
Tumor
0.4
568
Normal
0.4
874
Normal
0.4
958
Normal
0.4
1042
Normal
0.4
332
Normal
0.4
716
Normal
0.4
1016
Normal
0.4
1028
Normal
0.3
286
Normal
0.3
954
Normal
0.3
514
Normal
0.3
878
Normal
0.3
642
Normal
0.3
1014
Normal
0.3
513
Tumor
0.3
342
Normal
0.3
952
Normal
0.3
444
Normal
0.3
488
Normal
0.3
1027
Tumor
0.3
884
Normal
0.3
411
Tumor
0.3
228
Normal
0.3
284
Normal
0.3
262
Normal
0.3
696
Normal
0.3
666
Normal
0.3
416
Normal
0.3
816
Normal
0.2
112
Tumor
0.2
446
Normal
0.2
721
Tumor
0.2
261
Tumor
0.2
1022
Normal
0.2
824
Normal
0.2
212
Normal
0.2
538
Normal
0.2
127
Tumor
0.2
916
Normal
0.2
922
Normal
0.2
722
Normal
0.2
713
Tumor
0.2
867
Tumor
0.2
188
Normal
0.2
882
Normal
0.2
142
Normal
0.2
672
Normal
0.2
1026
Normal
0.2
146
Normal
0.2
448
Normal
0.2
911
Tumor
0.2
956
Normal
0.2
1045
Tumor
0.2
976
Normal
0.2
571
Tumor
0.2
744
Normal
0.1
313
Tumor
0.1
1032
Normal
0.1
187
Tumor
0.1
982
Normal
0.1
915
Tumor
0.1
113
Tumor
0.1
366
Normal
0.1
362
Normal
0.1
852
Normal
0.1
481
Tumor
0.1
145
Tumor
0.1
386
Normal
0.1
368
Normal
0.1
866
Normal
0.1
918
Normal
0.1
435
Tumor
0.1
214
Normal
0.1
978
Normal
0.0
494
Normal
0.0
477
Tumor
0.0
647
Tumor
0.0
141
Tumor
0.0
574
Normal
0.0
695
Tumor
0.0
516
Normal
0.0
341
Tumor
0.0
126
Normal
0.0
232
Normal
0.0
392
Normal
0.0
364
Normal
0.0
664
Normal
0.0
421
Tumor
0.0
138
Normal
0.0
966
Normal
0.0
755
Tumor
0.0
312
Normal
0.0
365
Tumor
-0.1
456
Normal
-0.1
685
Tumor
-0.1
968
Normal
-0.1
353
Tumor
-0.1
913
Tumor
-0.1
328
Normal
-0.1
777
Tumor
-0.1
977
Tumor
-0.1
431
Tumor
-0.1
563
Tumor
-0.1
124
Normal
-0.1
857
Tumor
-0.2
963
Tumor
-0.2
268
Normal
-0.2
818
Normal
-0.2
221
Tumor
-0.2
384
Normal
-0.2
785
Tumor
-0.2
615
Tumor
-0.2
277
Tumor
-0.2
361
Tumor
-0.2
528
Normal
-0.2
923
Tumor
-0.2
483
Tumor
-0.2
257
Tumor
-0.2
171
Tumor
-0.2
434
Normal
-0.2
558
Normal
-0.2
192
Normal
-0.3
355
Tumor
-0.3
161
Tumor
-0.3
861
Tumor
-0.3
813
Tumor
-0.3
185
Tumor
-0.3
553
Tumor
-0.3
357
Tumor
-0.3
297
Tumor
-0.3
492
Normal
-0.3
135
Tumor
-0.3
727
Tumor
-0.3
473
Tumor
-0.3
951
Tumor
-0.3
617
Tumor
-0.3
191
Tumor
-0.4
218
Normal
-0.4
147
Tumor
-0.4
665
Tumor
-0.4
393
Tumor
-0.4
227
Tumor
-0.4
461
Tumor
-0.4
524
Normal
-0.4
415
Tumor
-0.4
498
Normal
-0.4
1044
Normal
-0.5
478
Normal
-0.5
641
Tumor
-0.5
533
Tumor
-0.5
383
Tumor
-0.5
195
Tumor
-0.5
224
Normal
-0.5
433
Tumor
-0.5
745
Tumor
-0.5
213
Tumor
-0.5
137
Tumor
-0.5
536
Normal
-0.6
737
Tumor
-0.6
814
Normal
-0.6
863
Tumor
-0.6
327
Tumor
-0.6
957
Tumor
-0.6
267
Tumor
-0.7
1025
Tumor
-0.7
823
Tumor
-0.7
425
Tumor
-0.7
491
Tumor
-0.7
1015
Tumor
-0.7
231
Tumor
-0.7
471
Tumor
-0.7
517
Tumor
-0.7
881
Tumor
-0.7
943
Tumor
-0.8
125
Tumor
-0.8
557
Tumor
-0.9
523
Tumor
-0.9
123
Tumor
-0.9
715
Tumor
-0.9
223
Tumor
-0.9
497
Tumor
-0.9
217
Tumor
-0.9
545
Tumor
-0.9
493
Tumor
-1.0
537
Tumor
-1.0
447
Tumor
-1.0
921
Tumor
-1.0
975
Tumor
-1.0
413
Tumor
-1.0
271
Tumor
-1.0
865
Tumor
-1.0
1021
Tumor
-1.0
953
Tumor
-1.1
917
Tumor
-1.1
395
Tumor
-1.1
445
Tumor
-1.2
663
Tumor
-1.2
724
Normal
-1.2
525
Tumor
-1.2
427
Tumor
-1.2
467
Tumor
-1.2
463
Tumor
-1.3
451
Tumor
-1.3
387
Tumor
-1.3
331
Tumor
-1.3
367
Tumor
-1.3
851
Tumor
-1.3
967
Tumor
-1.3
311
Tumor
-1.3
697
Tumor
-1.4
131
Tumor
-1.4
877
Tumor
-1.4
983
Tumor
-1.4
343
Tumor
-1.4
567
Tumor
-1.4
375
Tumor
-1.5
351
Tumor
-1.5
455
Tumor
-1.5
573
Tumor
-1.5
391
Tumor
-1.5
1043
Tumor
-1.6
1031
Tumor
-1.6
527
Tumor
-1.6
671
Tumor
-1.7
283
Tumor
-1.7
743
Tumor
-1.7
363
Tumor
-1.7
385
Tumor
-1.8
965
Tumor
-1.8
817
Tumor
-1.9
211
Tumor
-1.9
815
Tumor
-1.9
661
Tumor
-2.2
285
Tumor
-2.2
535
Tumor
-2.2
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.