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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC26A11 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
27.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
27.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
25.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
25.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
25.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
23.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
23.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
20.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
20.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
19.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
18.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
18.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
18.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
16.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
16.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
16.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
15.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
15.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
15.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
15.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
15.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
14.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
14.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
14.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
14.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
14.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
14.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
13.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
13.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
13.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
13.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
13.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
13.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
12.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
12.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
12.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
12.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
12.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
12.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
12.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
12.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
12.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
12.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
11.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
11.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
11.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
11.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
11.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
11.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
11.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
11.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
11.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
11.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
11.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
11.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
11.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
11.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
11.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
10.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
10.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
10.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
10.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
10.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
10.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
10.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
10.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
10.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
10.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
10.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
10.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
10.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
9.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
9.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
9.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
9.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
9.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
9.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
9.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
9.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
9.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
9.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
9.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
9.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
9.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
9.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
9.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
9.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
9.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
9.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
9.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
9.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
9.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
8.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
8.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
8.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
8.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
8.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
8.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
8.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
8.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
8.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
8.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
8.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
8.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
8.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
8.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
8.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
8.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
8.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
8.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
8.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
8.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
7.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
7.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
7.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
7.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
7.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
7.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
7.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
7.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
7.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
7.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
7.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
7.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
7.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
7.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
7.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
7.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
7.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
7.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
7.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
7.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
7.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
7.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
7.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
7.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
7.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
7.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
7.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
7.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
7.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
7.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
7.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
7.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
7.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
7.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
7.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
6.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
6.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
6.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
6.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
6.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
6.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
6.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
6.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
6.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
6.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
6.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
6.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
6.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
6.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
6.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
6.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
6.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
6.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
6.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
6.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
6.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
6.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
6.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
6.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
6.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
6.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
6.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
6.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
5.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
5.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
5.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
5.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
5.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
5.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
5.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
5.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
5.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
5.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
5.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
5.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
5.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
5.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
5.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
5.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
5.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
5.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
5.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
5.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
5.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
5.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
5.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
5.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
5.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
4.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
4.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
4.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
4.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
4.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
4.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
4.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
4.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
4.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
4.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
4.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
4.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
4.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
4.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
4.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
4.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
4.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
4.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
4.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
4.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
4.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
4.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
3.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
3.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
3.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
3.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
3.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
3.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
3.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
3.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
3.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
3.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
3.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
3.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
3.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
2.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
2.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
2.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
2.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
2.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
1.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
1.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC26A11 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.0
Number of samples
231
Samples
Sample
Description
TPM
DO23523
0 years, male, NA, stage:3, alive, 1080 days
111.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
72.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
22.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
21.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
19.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
19.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
18.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
18.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
18.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
16.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
15.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
15.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
15.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
14.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
14.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
14.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
13.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
13.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
13.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
13.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
12.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
12.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
12.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
11.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
11.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
11.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
11.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
11.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
11.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
11.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
10.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
10.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
10.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
10.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
10.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
10.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
10.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
10.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
10.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
10.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
9.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
9.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
9.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
9.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
9.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
9.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
9.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
9.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
9.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
9.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
9.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
9.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
9.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
9.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
9.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
9.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
9.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
9.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
9.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
9.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
8.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
8.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
8.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
8.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
8.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
8.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
8.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
8.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
8.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
8.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
8.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
8.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
8.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
8.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
8.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
8.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
8.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
8.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
7.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
7.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
7.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
7.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
7.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
7.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
7.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
7.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
7.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
7.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
7.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
7.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
7.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
7.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
7.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
7.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
7.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
6.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
6.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
6.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
6.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
6.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
6.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
6.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
6.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
6.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
6.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
6.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
6.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
6.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
6.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
6.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
6.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
6.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
6.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
6.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
6.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
6.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
6.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
6.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
6.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
6.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
6.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
5.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
5.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
5.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
5.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
5.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
5.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
5.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
5.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
5.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
5.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
5.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
5.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
5.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
5.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
5.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
5.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
5.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
5.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
5.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
5.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
5.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
5.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
5.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
5.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
5.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
5.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
5.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
5.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
5.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
5.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
4.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
4.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
4.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
4.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
4.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
4.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
4.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
4.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
4.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
4.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
4.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
4.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
4.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
4.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
4.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
4.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
4.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
4.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
4.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
4.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
4.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
4.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
4.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
4.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
4.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
4.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
4.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
3.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
3.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
3.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
3.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
3.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
3.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
3.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
3.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
3.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
3.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
3.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
3.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
3.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
3.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
3.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
3.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
3.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
3.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
2.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
2.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
2.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
2.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
2.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
2.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
2.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
1.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
965
Tumor
1.7
533
Tumor
1.6
435
Tumor
1.4
147
Tumor
1.3
123
Tumor
1.3
257
Tumor
1.2
491
Tumor
1.2
745
Tumor
1.1
517
Tumor
0.9
741
Tumor
0.8
473
Tumor
0.8
124
Normal
0.7
171
Tumor
0.7
573
Tumor
0.7
525
Tumor
0.6
271
Tumor
0.6
363
Tumor
0.6
196
Normal
0.6
953
Tumor
0.6
851
Tumor
0.6
222
Normal
0.6
421
Tumor
0.6
863
Tumor
0.5
114
Normal
0.5
137
Tumor
0.5
125
Tumor
0.5
727
Tumor
0.5
537
Tumor
0.5
567
Tumor
0.5
231
Tumor
0.5
715
Tumor
0.5
571
Tumor
0.5
112
Tumor
0.5
824
Normal
0.4
963
Tumor
0.4
867
Tumor
0.4
815
Tumor
0.4
818
Normal
0.4
136
Normal
0.4
635
Tumor
0.4
127
Tumor
0.4
128
Normal
0.4
111
Normal
0.4
685
Tumor
0.3
131
Tumor
0.3
1042
Normal
0.3
433
Tumor
0.3
481
Tumor
0.3
975
Tumor
0.3
145
Tumor
0.3
564
Normal
0.3
858
Normal
0.3
436
Normal
0.3
862
Normal
0.3
126
Normal
0.3
923
Tumor
0.3
728
Normal
0.3
432
Normal
0.3
328
Normal
0.3
446
Normal
0.3
464
Normal
0.3
361
Tumor
0.3
723
Tumor
0.2
477
Tumor
0.2
868
Normal
0.2
227
Tumor
0.2
617
Tumor
0.2
482
Normal
0.2
957
Tumor
0.2
742
Normal
0.2
456
Normal
0.2
387
Tumor
0.2
557
Tumor
0.2
146
Normal
0.2
355
Tumor
0.2
724
Normal
0.2
132
Normal
0.2
877
Tumor
0.2
221
Tumor
0.2
277
Tumor
0.2
142
Normal
0.2
722
Normal
0.2
665
Tumor
0.2
738
Normal
0.2
1013
Tumor
0.2
695
Tumor
0.1
356
Normal
0.1
472
Normal
0.1
977
Tumor
0.1
466
Normal
0.1
452
Normal
0.1
563
Tumor
0.1
528
Normal
0.1
364
Normal
0.1
278
Normal
0.1
261
Tumor
0.1
743
Tumor
0.1
428
Normal
0.1
926
Normal
0.1
185
Tumor
0.1
618
Normal
0.1
422
Normal
0.1
572
Normal
0.1
187
Tumor
0.1
568
Normal
0.1
642
Normal
0.1
756
Normal
0.1
465
Tumor
0.1
462
Normal
0.1
388
Normal
0.1
534
Normal
0.1
411
Tumor
0.1
882
Normal
0.1
737
Tumor
0.1
817
Tumor
0.1
423
Tumor
0.1
866
Normal
0.1
938
Normal
0.1
391
Tumor
0.1
884
Normal
0.0
424
Normal
0.0
426
Normal
0.0
286
Normal
0.0
394
Normal
0.0
443
Tumor
0.0
162
Normal
0.0
918
Normal
0.0
912
Normal
0.0
956
Normal
0.0
716
Normal
0.0
873
Tumor
0.0
983
Tumor
0.0
1027
Tumor
0.0
546
Normal
0.0
416
Normal
0.0
396
Normal
0.0
415
Tumor
0.0
1022
Normal
0.0
161
Tumor
0.0
314
Normal
0.0
816
Normal
0.0
113
Tumor
0.0
474
Normal
0.0
313
Tumor
0.0
186
Normal
0.0
937
Tumor
0.0
721
Tumor
0.0
414
Normal
0.0
513
Tumor
0.0
284
Normal
0.0
141
Tumor
0.0
914
Normal
0.0
954
Normal
0.0
852
Normal
0.0
558
Normal
0.0
434
Normal
0.0
413
Tumor
0.0
1046
Normal
0.0
412
Normal
0.0
471
Tumor
-0.1
214
Normal
-0.1
478
Normal
-0.1
514
Normal
-0.1
922
Normal
-0.1
616
Normal
-0.1
944
Normal
-0.1
864
Normal
-0.1
955
Tumor
-0.1
312
Normal
-0.1
964
Normal
-0.1
664
Normal
-0.1
367
Tumor
-0.1
212
Normal
-0.1
924
Normal
-0.1
148
Normal
-0.1
713
Tumor
-0.1
1025
Tumor
-0.1
686
Normal
-0.1
1014
Normal
-0.1
823
Tumor
-0.1
1016
Normal
-0.1
978
Normal
-0.1
188
Normal
-0.1
857
Tumor
-0.1
425
Tumor
-0.1
1028
Normal
-0.1
138
Normal
-0.1
232
Normal
-0.1
444
Normal
-0.2
172
Normal
-0.2
696
Normal
-0.2
951
Tumor
-0.2
553
Tumor
-0.2
636
Normal
-0.2
574
Normal
-0.2
968
Normal
-0.2
1032
Normal
-0.2
468
Normal
-0.2
431
Tumor
-0.2
916
Normal
-0.2
967
Tumor
-0.2
641
Tumor
-0.2
518
Normal
-0.2
228
Normal
-0.2
448
Normal
-0.2
366
Normal
-0.2
958
Normal
-0.2
526
Normal
-0.2
392
Normal
-0.2
224
Normal
-0.2
332
Normal
-0.2
672
Normal
-0.2
698
Normal
-0.2
331
Tumor
-0.2
218
Normal
-0.2
362
Normal
-0.2
952
Normal
-0.2
915
Tumor
-0.2
554
Normal
-0.2
272
Normal
-0.2
627
Tumor
-0.2
883
Tumor
-0.2
671
Tumor
-0.2
385
Tumor
-0.2
878
Normal
-0.2
297
Tumor
-0.3
628
Normal
-0.3
714
Normal
-0.3
861
Tumor
-0.3
1043
Tumor
-0.3
386
Normal
-0.3
298
Normal
-0.3
384
Normal
-0.3
494
Normal
-0.3
666
Normal
-0.3
648
Normal
-0.3
921
Tumor
-0.3
697
Tumor
-0.3
662
Normal
-0.3
981
Tumor
-0.3
375
Tumor
-0.3
376
Normal
-0.3
1021
Tumor
-0.3
538
Normal
-0.3
982
Normal
-0.3
881
Tumor
-0.3
545
Tumor
-0.3
395
Tumor
-0.3
283
Tumor
-0.3
285
Tumor
-0.3
1044
Normal
-0.3
874
Normal
-0.3
445
Tumor
-0.3
535
Tumor
-0.3
786
Normal
-0.3
516
Normal
-0.3
393
Tumor
-0.3
911
Tumor
-0.3
497
Tumor
-0.4
976
Normal
-0.4
515
Tumor
-0.4
746
Normal
-0.4
365
Tumor
-0.4
913
Tumor
-0.4
223
Tumor
-0.4
483
Tumor
-0.4
368
Normal
-0.4
488
Normal
-0.4
487
Tumor
-0.4
524
Normal
-0.4
135
Tumor
-0.4
615
Tumor
-0.4
1026
Normal
-0.4
661
Tumor
-0.4
192
Normal
-0.4
455
Tumor
-0.4
663
Tumor
-0.4
258
Normal
-0.4
527
Tumor
-0.4
484
Normal
-0.4
1045
Tumor
-0.4
327
Tumor
-0.4
311
Tumor
-0.4
777
Tumor
-0.4
383
Tumor
-0.4
984
Normal
-0.4
493
Tumor
-0.4
943
Tumor
-0.4
451
Tumor
-0.5
647
Tumor
-0.5
447
Tumor
-0.5
262
Normal
-0.5
267
Tumor
-0.5
917
Tumor
-0.5
1031
Tumor
-0.5
744
Normal
-0.5
427
Tumor
-0.5
536
Normal
-0.5
461
Tumor
-0.6
467
Tumor
-0.6
195
Tumor
-0.6
966
Normal
-0.6
865
Tumor
-0.6
925
Tumor
-0.6
213
Tumor
-0.6
268
Normal
-0.6
498
Normal
-0.6
191
Tumor
-0.6
217
Tumor
-0.6
492
Normal
-0.6
463
Tumor
-0.6
1015
Tumor
-0.6
778
Normal
-0.7
1041
Tumor
-0.7
211
Tumor
-0.7
523
Tumor
-0.8
814
Normal
-1.1
785
Tumor
-1.4
813
Tumor
-1.6
755
Tumor
-2.0
351
Tumor
N/A
352
Normal
N/A
353
Tumor
N/A
354
Normal
N/A
357
Tumor
N/A
358
Normal
N/A
341
Tumor
N/A
342
Normal
N/A
343
Tumor
N/A
344
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
