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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC25A42 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
23.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
97.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
86.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
83.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
82.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
79.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
78.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
74.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
73.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
73.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
72.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
71.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
71.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
68.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
66.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
62.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
61.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
61.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
59.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
59.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
59.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
57.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
57.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
56.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
56.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
55.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
54.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
54.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
53.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
52.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
50.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
49.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
48.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
48.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
48.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
48.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
47.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
47.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
47.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
46.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
46.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
46.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
45.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
45.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
45.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
44.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
44.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
43.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
43.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
42.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
42.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
42.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
41.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
41.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
41.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
41.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
40.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
40.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
40.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
39.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
38.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
38.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
37.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
36.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
36.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
36.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
36.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
35.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
34.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
34.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
34.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
34.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
33.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
33.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
32.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
32.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
31.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
31.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
31.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
31.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
31.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
30.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
30.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
30.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
30.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
29.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
29.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
29.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
29.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
29.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
28.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
28.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
28.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
28.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
27.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
27.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
27.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
27.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
27.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
27.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
27.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
26.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
26.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
26.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
26.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
26.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
26.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
26.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
26.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
26.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
26.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
25.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
25.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
25.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
25.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
25.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
25.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
25.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
24.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
24.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
24.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
24.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
24.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
24.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
24.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
24.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
23.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
23.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
23.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
23.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
23.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
23.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
23.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
23.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
23.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
23.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
23.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
23.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
23.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
22.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
22.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
22.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
22.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
22.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
21.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
21.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
21.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
21.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
21.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
21.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
21.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
21.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
21.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
21.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
21.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
21.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
20.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
20.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
20.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
20.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
20.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
19.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
19.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
19.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
19.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
19.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
19.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
19.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
19.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
19.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
19.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
19.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
19.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
18.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
18.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
18.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
18.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
18.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
18.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
18.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
18.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
18.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
18.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
18.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
18.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
18.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
17.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
17.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
17.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
17.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
17.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
17.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
17.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
17.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
17.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
17.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
17.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
17.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
17.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
17.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
17.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
17.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
17.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
17.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
16.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
16.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
16.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
16.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
16.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
16.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
16.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
16.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
16.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
16.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
15.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
15.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
15.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
15.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
15.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
15.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
15.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
15.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
15.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
15.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
15.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
15.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
15.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
15.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
15.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
14.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
14.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
14.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
14.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
14.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
14.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
14.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
14.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
14.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
14.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
14.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
14.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
14.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
13.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
13.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
13.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
13.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
13.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
13.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
13.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
13.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
13.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
13.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
12.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
12.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
12.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
12.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
12.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
12.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
12.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
12.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
12.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
12.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
12.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
12.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
12.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
12.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
12.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
12.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
12.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
11.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
11.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
11.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
11.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
11.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
11.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
11.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
11.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
11.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
11.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
11.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
10.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
10.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
10.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
10.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
10.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
10.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
10.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
10.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
10.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
10.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
9.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
9.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
9.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
9.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
9.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
8.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
8.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
8.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
8.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
8.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
8.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
8.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
8.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
8.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
8.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
8.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
8.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
8.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
8.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
7.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
7.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
7.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
7.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
7.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
7.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
7.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
7.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
6.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
6.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
6.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
6.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
5.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
5.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
5.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
5.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
5.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
5.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
4.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
4.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
4.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
4.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
3.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
3.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
3.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
3.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
3.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
2.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
2.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
2.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
1.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
1.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC25A42 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
22.9
Number of samples
231
Samples
Sample
Description
TPM
DO45173
0 years, male, NA, stage:3, alive, 1170 days
143.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
124.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
101.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
89.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
88.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
88.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
86.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
85.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
83.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
68.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
65.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
65.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
64.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
63.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
62.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
61.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
58.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
57.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
52.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
50.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
48.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
47.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
46.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
46.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
46.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
43.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
43.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
41.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
40.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
40.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
40.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
39.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
39.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
38.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
38.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
36.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
36.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
35.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
34.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
33.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
33.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
33.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
31.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
31.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
31.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
31.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
31.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
30.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
30.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
30.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
29.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
28.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
28.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
28.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
28.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
28.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
28.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
28.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
27.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
27.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
26.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
26.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
26.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
26.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
26.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
26.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
25.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
25.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
24.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
24.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
24.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
24.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
23.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
23.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
23.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
23.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
23.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
23.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
23.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
22.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
22.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
22.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
22.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
22.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
21.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
21.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
21.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
21.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
21.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
21.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
20.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
20.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
20.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
20.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
20.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
20.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
20.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
20.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
20.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
20.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
20.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
19.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
19.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
19.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
19.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
18.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
18.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
18.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
18.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
18.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
18.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
18.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
18.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
18.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
17.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
17.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
16.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
16.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
16.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
16.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
16.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
16.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
16.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
15.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
15.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
15.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
15.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
15.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
15.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
15.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
15.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
15.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
15.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
15.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
15.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
14.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
14.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
14.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
14.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
14.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
14.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
13.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
13.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
13.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
13.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
13.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
13.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
13.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
13.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
13.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
13.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
13.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
12.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
12.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
12.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
12.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
12.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
11.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
11.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
11.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
11.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
11.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
11.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
10.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
10.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
10.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
10.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
10.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
10.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
10.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
10.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
10.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
9.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
9.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
9.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
9.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
9.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
9.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
9.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
9.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
9.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
9.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
9.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
8.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
8.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
8.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
7.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
7.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
7.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
6.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
6.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
6.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
6.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
6.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
6.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
6.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
6.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
6.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
5.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
5.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
5.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
4.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
4.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
4.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
3.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
3.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
3.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
3.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
2.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
2.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
2.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
2.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
2.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
2.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
2.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
1.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
1.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
1.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
1.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
1.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
1.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
1.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
627
Tumor
1.6
981
Tumor
1.6
635
Tumor
1.4
513
Tumor
1.3
171
Tumor
1.3
563
Tumor
1.1
436
Normal
0.9
867
Tumor
0.9
424
Normal
0.9
715
Tumor
0.9
618
Normal
0.9
128
Normal
0.9
414
Normal
0.9
111
Normal
0.9
231
Tumor
0.8
328
Normal
0.8
665
Tumor
0.8
314
Normal
0.8
428
Normal
0.8
332
Normal
0.8
741
Tumor
0.8
358
Normal
0.8
464
Normal
0.8
868
Normal
0.8
186
Normal
0.8
148
Normal
0.8
124
Normal
0.8
465
Tumor
0.8
648
Normal
0.8
354
Normal
0.8
568
Normal
0.8
786
Normal
0.7
426
Normal
0.7
365
Tumor
0.7
636
Normal
0.7
915
Tumor
0.7
278
Normal
0.7
114
Normal
0.7
356
Normal
0.7
884
Normal
0.7
964
Normal
0.7
388
Normal
0.7
261
Tumor
0.7
452
Normal
0.7
162
Normal
0.7
258
Normal
0.7
344
Normal
0.7
298
Normal
0.7
342
Normal
0.7
172
Normal
0.7
362
Normal
0.7
446
Normal
0.7
666
Normal
0.7
376
Normal
0.7
664
Normal
0.7
196
Normal
0.7
132
Normal
0.7
396
Normal
0.6
628
Normal
0.6
462
Normal
0.6
222
Normal
0.6
466
Normal
0.6
534
Normal
0.6
824
Normal
0.6
394
Normal
0.6
911
Tumor
0.6
1045
Tumor
0.6
742
Normal
0.6
746
Normal
0.6
422
Normal
0.6
922
Normal
0.6
642
Normal
0.6
564
Normal
0.6
341
Tumor
0.6
866
Normal
0.6
1046
Normal
0.6
616
Normal
0.6
874
Normal
0.6
393
Tumor
0.6
958
Normal
0.6
785
Tumor
0.6
818
Normal
0.6
127
Tumor
0.5
232
Normal
0.5
526
Normal
0.5
571
Tumor
0.5
924
Normal
0.5
366
Normal
0.5
392
Normal
0.5
864
Normal
0.5
136
Normal
0.5
615
Tumor
0.5
218
Normal
0.5
1028
Normal
0.5
662
Normal
0.5
1032
Normal
0.5
352
Normal
0.5
862
Normal
0.5
126
Normal
0.5
214
Normal
0.5
432
Normal
0.5
944
Normal
0.5
722
Normal
0.5
546
Normal
0.5
112
Tumor
0.5
912
Normal
0.5
528
Normal
0.5
484
Normal
0.5
918
Normal
0.4
262
Normal
0.4
368
Normal
0.4
952
Normal
0.4
716
Normal
0.4
672
Normal
0.4
984
Normal
0.4
882
Normal
0.4
272
Normal
0.4
364
Normal
0.4
968
Normal
0.4
723
Tumor
0.4
494
Normal
0.4
698
Normal
0.4
416
Normal
0.4
188
Normal
0.4
982
Normal
0.4
938
Normal
0.4
1041
Tumor
0.4
572
Normal
0.4
1026
Normal
0.4
488
Normal
0.4
456
Normal
0.4
268
Normal
0.4
448
Normal
0.4
1022
Normal
0.4
1014
Normal
0.4
686
Normal
0.4
756
Normal
0.4
468
Normal
0.4
312
Normal
0.4
384
Normal
0.3
487
Tumor
0.3
412
Normal
0.3
926
Normal
0.3
978
Normal
0.3
858
Normal
0.3
714
Normal
0.3
286
Normal
0.3
685
Tumor
0.3
1016
Normal
0.3
914
Normal
0.3
641
Tumor
0.3
518
Normal
0.3
138
Normal
0.3
956
Normal
0.3
386
Normal
0.3
146
Normal
0.3
873
Tumor
0.3
744
Normal
0.3
472
Normal
0.3
728
Normal
0.3
878
Normal
0.3
738
Normal
0.3
976
Normal
0.3
514
Normal
0.3
916
Normal
0.3
361
Tumor
0.3
435
Tumor
0.3
557
Tumor
0.3
852
Normal
0.3
574
Normal
0.3
538
Normal
0.3
696
Normal
0.3
554
Normal
0.3
482
Normal
0.2
913
Tumor
0.2
1044
Normal
0.2
816
Normal
0.2
434
Normal
0.2
192
Normal
0.2
423
Tumor
0.2
474
Normal
0.2
142
Normal
0.2
451
Tumor
0.2
1042
Normal
0.2
955
Tumor
0.2
145
Tumor
0.2
967
Tumor
0.2
966
Normal
0.1
745
Tumor
0.1
778
Normal
0.1
861
Tumor
0.1
123
Tumor
0.1
391
Tumor
0.1
954
Normal
0.1
113
Tumor
0.1
137
Tumor
0.1
863
Tumor
0.1
1015
Tumor
0.1
516
Normal
0.0
755
Tumor
0.0
195
Tumor
0.0
461
Tumor
0.0
267
Tumor
0.0
217
Tumor
0.0
721
Tumor
0.0
221
Tumor
0.0
444
Normal
0.0
271
Tumor
0.0
558
Normal
0.0
695
Tumor
0.0
524
Normal
0.0
185
Tumor
0.0
1027
Tumor
0.0
1025
Tumor
-0.1
481
Tumor
-0.1
284
Normal
-0.1
212
Normal
-0.1
228
Normal
-0.1
433
Tumor
-0.1
187
Tumor
-0.1
857
Tumor
-0.1
353
Tumor
-0.1
498
Normal
-0.1
537
Tumor
-0.1
297
Tumor
-0.1
327
Tumor
-0.1
1043
Tumor
-0.1
515
Tumor
-0.2
367
Tumor
-0.2
713
Tumor
-0.2
727
Tumor
-0.2
671
Tumor
-0.2
357
Tumor
-0.2
492
Normal
-0.2
277
Tumor
-0.2
413
Tumor
-0.2
553
Tumor
-0.2
331
Tumor
-0.3
387
Tumor
-0.3
224
Normal
-0.3
478
Normal
-0.3
851
Tumor
-0.3
431
Tumor
-0.3
141
Tumor
-0.3
445
Tumor
-0.3
923
Tumor
-0.3
257
Tumor
-0.3
777
Tumor
-0.3
147
Tumor
-0.3
411
Tumor
-0.4
814
Normal
-0.4
877
Tumor
-0.4
921
Tumor
-0.4
536
Normal
-0.4
383
Tumor
-0.4
523
Tumor
-0.4
415
Tumor
-0.4
925
Tumor
-0.4
883
Tumor
-0.4
161
Tumor
-0.4
477
Tumor
-0.4
227
Tumor
-0.4
1031
Tumor
-0.5
191
Tumor
-0.5
223
Tumor
-0.5
617
Tumor
-0.5
813
Tumor
-0.5
443
Tumor
-0.5
395
Tumor
-0.5
953
Tumor
-0.5
663
Tumor
-0.5
977
Tumor
-0.5
491
Tumor
-0.6
881
Tumor
-0.6
533
Tumor
-0.6
943
Tumor
-0.6
965
Tumor
-0.6
823
Tumor
-0.6
363
Tumor
-0.6
917
Tumor
-0.6
421
Tumor
-0.6
135
Tumor
-0.6
313
Tumor
-0.6
463
Tumor
-0.6
213
Tumor
-0.7
483
Tumor
-0.7
467
Tumor
-0.7
517
Tumor
-0.7
285
Tumor
-0.7
455
Tumor
-0.7
957
Tumor
-0.8
447
Tumor
-0.8
125
Tumor
-0.8
375
Tumor
-0.8
1013
Tumor
-0.8
937
Tumor
-0.8
743
Tumor
-0.8
647
Tumor
-0.8
975
Tumor
-0.8
737
Tumor
-0.8
951
Tumor
-0.8
493
Tumor
-0.8
425
Tumor
-0.9
963
Tumor
-0.9
724
Normal
-0.9
1021
Tumor
-0.9
697
Tumor
-0.9
567
Tumor
-1.0
471
Tumor
-1.0
427
Tumor
-1.0
473
Tumor
-1.0
865
Tumor
-1.0
525
Tumor
-1.0
983
Tumor
-1.0
351
Tumor
-1.0
527
Tumor
-1.1
311
Tumor
-1.1
343
Tumor
-1.1
131
Tumor
-1.1
815
Tumor
-1.1
817
Tumor
-1.1
573
Tumor
-1.1
385
Tumor
-1.2
545
Tumor
-1.2
355
Tumor
-1.2
661
Tumor
-1.2
497
Tumor
-1.3
535
Tumor
-1.4
283
Tumor
-1.6
211
Tumor
-2.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
