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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PITPNB is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
67.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
54.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
50.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
50.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
45.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
45.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
44.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
42.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
41.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
39.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
39.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
39.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
36.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
36.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
36.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
36.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
36.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
35.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
35.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
35.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
35.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
35.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
34.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
34.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
34.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
34.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
33.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
33.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
33.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
33.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
33.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
32.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
32.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
32.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
32.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
32.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
32.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
32.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
32.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
31.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
31.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
31.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
31.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
30.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
30.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
30.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
30.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
30.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
30.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
30.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
29.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
29.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
29.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
29.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
29.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
29.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
29.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
29.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
29.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
29.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
29.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
29.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
29.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
28.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
28.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
28.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
28.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
28.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
28.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
28.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
27.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
27.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
27.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
27.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
27.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
27.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
27.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
27.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
27.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
27.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
27.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
26.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
26.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
26.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
26.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
26.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
26.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
26.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
26.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
26.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
26.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
26.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
26.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
25.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
25.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
25.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
25.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
24.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
24.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
24.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
24.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
24.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
24.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
24.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
24.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
23.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
23.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
23.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
23.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
23.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
23.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
23.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
23.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
23.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
23.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
22.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
22.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
22.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
22.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
22.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
22.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
22.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
22.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
22.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
22.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
22.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
22.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
22.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
22.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
22.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
22.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
21.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
21.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
21.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
21.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
21.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
21.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
21.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
21.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
21.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
21.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
21.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
21.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
21.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
21.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
21.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
21.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
21.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
21.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
21.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
21.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
21.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
21.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
20.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
20.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
20.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
20.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
20.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
20.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
20.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
20.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
20.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
20.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
20.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
20.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
20.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
20.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
20.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
20.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
20.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
20.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
20.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
20.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
20.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
20.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
19.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
19.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
19.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
19.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
19.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
19.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
19.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
19.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
19.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
19.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
19.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
19.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
19.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
19.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
19.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
19.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
19.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
19.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
19.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
19.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
18.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
18.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
18.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
18.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
18.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
18.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
18.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
18.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
18.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
18.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
18.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
18.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
18.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
18.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
18.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
18.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
18.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
18.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
18.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
17.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
17.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
17.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
17.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
17.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
17.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
17.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
17.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
17.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
17.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
17.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
17.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
16.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
16.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
16.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
16.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
16.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
16.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
16.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
16.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
16.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
16.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
16.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
16.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
16.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
16.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
15.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
15.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
15.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
15.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
15.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
15.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
15.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
15.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
15.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
15.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
15.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
15.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
15.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
15.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
15.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
15.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
15.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
15.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
15.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
15.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
14.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
14.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
14.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
14.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
14.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
14.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
14.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
14.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
14.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
14.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
14.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
14.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
13.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
13.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
13.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
13.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
13.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
13.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
13.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
13.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
13.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
13.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
13.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
13.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
13.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
13.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
13.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
13.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
13.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
13.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
13.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
13.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
13.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
13.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
13.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
13.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
13.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
12.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
12.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
12.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
12.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
12.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
12.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
12.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
12.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
12.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
12.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
12.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
11.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
11.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
11.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
11.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
11.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
11.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
11.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
11.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
11.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
11.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
11.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
11.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
10.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
10.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
10.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
10.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
10.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
10.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
10.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
10.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
10.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
10.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
10.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
10.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
10.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
10.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
10.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
9.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
9.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
9.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
9.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
9.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
9.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
8.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
8.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
8.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
8.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
8.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
8.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
8.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
8.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
7.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
7.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
7.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
7.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
6.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
6.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
3.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PITPNB is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
28.3
Number of samples
231
Samples
Sample
Description
TPM
DO23521
0 years, male, NA, stage:3, alive, 1110 days
98.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
74.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
70.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
64.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
54.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
54.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
49.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
47.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
46.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
46.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
45.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
44.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
43.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
43.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
42.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
42.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
41.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
41.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
40.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
40.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
40.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
39.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
39.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
38.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
38.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
38.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
37.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
37.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
37.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
37.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
37.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
37.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
36.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
36.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
36.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
36.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
36.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
35.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
35.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
35.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
35.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
35.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
35.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
35.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
35.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
34.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
34.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
34.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
34.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
34.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
34.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
34.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
34.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
33.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
33.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
33.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
33.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
33.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
33.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
33.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
33.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
32.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
32.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
32.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
32.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
32.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
32.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
32.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
32.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
32.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
32.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
32.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
32.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
31.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
31.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
31.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
31.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
30.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
30.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
30.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
30.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
30.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
30.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
30.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
29.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
29.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
29.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
29.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
29.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
29.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
29.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
29.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
29.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
29.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
29.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
29.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
28.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
28.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
28.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
28.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
28.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
28.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
28.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
28.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
28.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
28.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
28.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
28.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
28.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
27.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
27.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
27.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
27.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
27.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
27.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
27.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
27.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
26.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
26.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
26.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
26.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
26.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
26.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
26.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
26.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
26.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
25.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
25.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
25.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
25.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
25.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
25.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
25.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
25.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
25.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
25.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
25.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
25.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
24.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
24.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
24.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
24.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
24.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
24.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
24.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
24.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
24.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
24.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
24.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
24.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
24.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
23.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
23.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
23.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
23.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
23.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
23.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
23.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
23.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
23.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
22.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
22.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
22.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
22.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
22.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
22.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
22.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
21.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
21.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
21.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
21.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
21.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
21.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
21.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
21.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
21.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
21.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
21.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
21.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
21.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
21.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
20.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
20.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
20.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
20.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
20.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
20.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
20.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
19.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
19.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
19.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
19.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
19.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
18.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
18.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
18.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
18.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
18.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
18.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
18.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
18.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
18.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
17.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
17.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
17.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
17.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
17.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
16.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
16.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
16.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
16.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
16.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
15.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
15.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
15.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
15.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
15.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
15.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
15.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
15.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
14.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
14.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
13.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
12.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
12.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
12.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
12.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
11.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
10.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
9.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
8.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
223
Tumor
1.0
445
Tumor
0.8
331
Tumor
0.7
1043
Tumor
0.6
535
Tumor
0.6
937
Tumor
0.5
327
Tumor
0.5
443
Tumor
0.5
523
Tumor
0.4
553
Tumor
0.4
957
Tumor
0.4
743
Tumor
0.4
536
Normal
0.4
113
Tumor
0.4
745
Tumor
0.4
567
Tumor
0.4
727
Tumor
0.4
1025
Tumor
0.4
966
Normal
0.4
128
Normal
0.3
341
Tumor
0.3
983
Tumor
0.3
147
Tumor
0.3
661
Tumor
0.3
131
Tumor
0.3
746
Normal
0.3
737
Tumor
0.3
448
Normal
0.3
921
Tumor
0.3
1026
Normal
0.3
862
Normal
0.3
878
Normal
0.3
1031
Tumor
0.3
497
Tumor
0.3
1044
Normal
0.3
271
Tumor
0.3
955
Tumor
0.3
554
Normal
0.3
537
Tumor
0.3
851
Tumor
0.3
778
Normal
0.3
298
Normal
0.3
695
Tumor
0.3
124
Normal
0.3
518
Normal
0.3
517
Tumor
0.3
1046
Normal
0.2
342
Normal
0.2
412
Normal
0.2
1014
Normal
0.2
416
Normal
0.2
425
Tumor
0.2
1028
Normal
0.2
952
Normal
0.2
938
Normal
0.2
196
Normal
0.2
546
Normal
0.2
742
Normal
0.2
926
Normal
0.2
956
Normal
0.2
111
Normal
0.2
127
Tumor
0.2
777
Tumor
0.2
738
Normal
0.2
286
Normal
0.2
866
Normal
0.2
714
Normal
0.2
218
Normal
0.2
484
Normal
0.2
488
Normal
0.2
557
Tumor
0.2
698
Normal
0.2
864
Normal
0.2
723
Tumor
0.2
1022
Normal
0.2
515
Tumor
0.2
527
Tumor
0.2
982
Normal
0.2
538
Normal
0.2
924
Normal
0.2
221
Tumor
0.2
873
Tumor
0.2
114
Normal
0.2
186
Normal
0.2
728
Normal
0.2
524
Normal
0.2
364
Normal
0.2
376
Normal
0.2
528
Normal
0.2
214
Normal
0.2
228
Normal
0.2
964
Normal
0.2
344
Normal
0.1
534
Normal
0.1
944
Normal
0.1
968
Normal
0.1
112
Tumor
0.1
756
Normal
0.1
918
Normal
0.1
212
Normal
0.1
142
Normal
0.1
471
Tumor
0.1
865
Tumor
0.1
922
Normal
0.1
357
Tumor
0.1
434
Normal
0.1
452
Normal
0.1
617
Tumor
0.1
414
Normal
0.1
954
Normal
0.1
358
Normal
0.1
436
Normal
0.1
858
Normal
0.1
356
Normal
0.1
487
Tumor
0.1
1032
Normal
0.1
628
Normal
0.1
912
Normal
0.1
472
Normal
0.1
314
Normal
0.1
492
Normal
0.1
882
Normal
0.1
786
Normal
0.1
816
Normal
0.1
432
Normal
0.1
224
Normal
0.1
392
Normal
0.1
852
Normal
0.1
978
Normal
0.1
686
Normal
0.1
284
Normal
0.1
916
Normal
0.1
958
Normal
0.1
1021
Tumor
0.1
967
Tumor
0.1
874
Normal
0.1
696
Normal
0.1
744
Normal
0.1
818
Normal
0.1
615
Tumor
0.1
136
Normal
0.1
965
Tumor
0.1
494
Normal
0.1
1045
Tumor
0.1
411
Tumor
0.1
447
Tumor
0.1
232
Normal
0.1
925
Tumor
0.1
126
Normal
0.1
976
Normal
0.1
984
Normal
0.1
222
Normal
0.1
262
Normal
0.1
483
Tumor
0.1
716
Normal
0.0
824
Normal
0.0
618
Normal
0.0
172
Normal
0.0
146
Normal
0.0
332
Normal
0.0
352
Normal
0.0
422
Normal
0.0
462
Normal
0.0
211
Tumor
0.0
277
Tumor
0.0
616
Normal
0.0
421
Tumor
0.0
975
Tumor
0.0
478
Normal
0.0
474
Normal
0.0
394
Normal
0.0
363
Tumor
0.0
664
Normal
0.0
951
Tumor
0.0
426
Normal
0.0
427
Tumor
0.0
516
Normal
0.0
185
Tumor
0.0
415
Tumor
0.0
187
Tumor
0.0
365
Tumor
0.0
648
Normal
0.0
482
Normal
0.0
466
Normal
0.0
368
Normal
0.0
636
Normal
0.0
386
Normal
0.0
498
Normal
0.0
1016
Normal
0.0
384
Normal
0.0
884
Normal
0.0
722
Normal
0.0
635
Tumor
0.0
328
Normal
0.0
424
Normal
0.0
817
Tumor
0.0
268
Normal
0.0
815
Tumor
0.0
258
Normal
0.0
456
Normal
0.0
148
Normal
0.0
533
Tumor
0.0
366
Normal
0.0
433
Tumor
0.0
162
Normal
0.0
857
Tumor
0.0
464
Normal
0.0
446
Normal
0.0
514
Normal
0.0
641
Tumor
0.0
572
Normal
0.0
188
Normal
0.0
137
Tumor
0.0
473
Tumor
0.0
278
Normal
-0.1
192
Normal
-0.1
132
Normal
-0.1
868
Normal
-0.1
1042
Normal
-0.1
272
Normal
-0.1
977
Tumor
-0.1
913
Tumor
-0.1
568
Normal
-0.1
138
Normal
-0.1
564
Normal
-0.1
461
Tumor
-0.1
662
Normal
-0.1
558
Normal
-0.1
362
Normal
-0.1
312
Normal
-0.1
697
Tumor
-0.1
467
Tumor
-0.1
923
Tumor
-0.1
642
Normal
-0.1
283
Tumor
-0.1
423
Tumor
-0.1
685
Tumor
-0.1
545
Tumor
-0.1
526
Normal
-0.1
217
Tumor
-0.1
388
Normal
-0.1
354
Normal
-0.1
914
Normal
-0.1
353
Tumor
-0.1
396
Normal
-0.1
666
Normal
-0.1
574
Normal
-0.1
191
Tumor
-0.1
468
Normal
-0.1
444
Normal
-0.1
647
Tumor
-0.1
135
Tumor
-0.1
493
Tumor
-0.1
213
Tumor
-0.1
721
Tumor
-0.1
391
Tumor
-0.1
627
Tumor
-0.1
563
Tumor
-0.1
428
Normal
-0.1
715
Tumor
-0.2
141
Tumor
-0.2
953
Tumor
-0.2
477
Tumor
-0.2
883
Tumor
-0.2
573
Tumor
-0.2
943
Tumor
-0.2
981
Tumor
-0.2
823
Tumor
-0.2
355
Tumor
-0.2
465
Tumor
-0.2
917
Tumor
-0.2
867
Tumor
-0.2
713
Tumor
-0.2
915
Tumor
-0.2
383
Tumor
-0.2
261
Tumor
-0.2
311
Tumor
-0.2
313
Tumor
-0.2
963
Tumor
-0.2
385
Tumor
-0.2
671
Tumor
-0.2
297
Tumor
-0.2
343
Tumor
-0.2
195
Tumor
-0.2
481
Tumor
-0.2
171
Tumor
-0.2
672
Normal
-0.2
785
Tumor
-0.2
145
Tumor
-0.2
513
Tumor
-0.2
881
Tumor
-0.2
393
Tumor
-0.2
367
Tumor
-0.3
395
Tumor
-0.3
231
Tumor
-0.3
257
Tumor
-0.3
571
Tumor
-0.3
227
Tumor
-0.3
1015
Tumor
-0.3
463
Tumor
-0.3
863
Tumor
-0.3
451
Tumor
-0.3
413
Tumor
-0.3
1041
Tumor
-0.3
525
Tumor
-0.3
1027
Tumor
-0.3
911
Tumor
-0.4
814
Normal
-0.4
123
Tumor
-0.4
663
Tumor
-0.4
351
Tumor
-0.4
387
Tumor
-0.4
431
Tumor
-0.4
665
Tumor
-0.4
285
Tumor
-0.5
724
Normal
-0.5
455
Tumor
-0.5
267
Tumor
-0.5
491
Tumor
-0.5
813
Tumor
-0.5
161
Tumor
-0.5
877
Tumor
-0.5
861
Tumor
-0.5
375
Tumor
-0.6
1013
Tumor
-0.6
755
Tumor
-0.7
361
Tumor
-0.7
435
Tumor
-0.7
125
Tumor
-0.9
741
Tumor
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
