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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FAM83H is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
69.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
69.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
67.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
66.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
65.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
55.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
53.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
53.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
53.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
51.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
50.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
47.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
47.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
46.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
44.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
44.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
42.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
42.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
41.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
41.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
40.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
39.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
39.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
38.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
38.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
38.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
37.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
36.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
36.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
36.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
35.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
35.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
35.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
34.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
34.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
34.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
34.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
33.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
33.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
33.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
32.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
32.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
32.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
32.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
31.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
31.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
31.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
30.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
30.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
30.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
30.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
30.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
30.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
29.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
29.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
29.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
29.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
29.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
29.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
29.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
28.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
28.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
28.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
28.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
28.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
28.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
27.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
27.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
27.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
27.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
27.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
26.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
26.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
26.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
26.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
26.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
25.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
25.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
25.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
25.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
25.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
25.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
24.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
24.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
24.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
24.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
24.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
23.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
23.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
23.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
23.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
23.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
23.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
23.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
23.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
22.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
22.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
22.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
22.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
22.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
22.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
22.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
22.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
22.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
22.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
22.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
22.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
22.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
22.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
21.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
21.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
21.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
21.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
21.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
21.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
21.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
20.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
20.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
20.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
20.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
20.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
20.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
20.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
20.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
20.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
19.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
19.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
19.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
19.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
19.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
19.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
19.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
19.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
19.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
19.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
19.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
19.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
19.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
18.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
18.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
18.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
18.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
18.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
18.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
18.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
18.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
18.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
18.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
17.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
17.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
17.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
17.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
17.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
17.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
16.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
16.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
16.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
16.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
16.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
16.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
16.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
16.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
15.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
15.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
15.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
15.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
15.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
15.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
15.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
15.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
15.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
15.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
15.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
15.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
15.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
15.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
15.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
15.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
15.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
15.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
15.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
14.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
14.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
14.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
14.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
14.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
14.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
14.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
14.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
14.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
14.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
14.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
14.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
13.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
13.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
13.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
13.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
13.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
13.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
13.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
13.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
13.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
13.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
13.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
13.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
13.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
13.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
13.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
13.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
12.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
12.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
12.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
12.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
12.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
12.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
12.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
12.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
12.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
12.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
12.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
12.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
12.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
12.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
12.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
12.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
11.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
11.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
11.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
11.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
11.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
11.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
11.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
11.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
11.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
11.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
11.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
11.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
11.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
11.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
11.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
11.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
10.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
10.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
10.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
10.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
10.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
10.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
10.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
10.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
10.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
10.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
10.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
10.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
10.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
9.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
9.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
9.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
9.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
9.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
9.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
9.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
9.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
9.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
9.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
9.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
9.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
9.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
9.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
9.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
8.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
8.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
8.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
8.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
8.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
8.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
8.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
8.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
8.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
8.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
8.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
7.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
7.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
7.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
7.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
7.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
7.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
7.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
7.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
6.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
6.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
6.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
6.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
6.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
6.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
6.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
6.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
6.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
6.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
5.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
5.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
5.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
5.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
5.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
5.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
4.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
4.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
4.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
3.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
2.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
1.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
1.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FAM83H is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.9
Number of samples
231
Samples
Sample
Description
TPM
DO50816
0 years, male, NA, stage:2, alive, 390 days
75.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
69.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
66.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
65.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
60.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
58.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
54.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
52.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
45.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
44.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
43.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
41.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
41.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
36.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
36.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
35.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
34.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
33.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
33.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
32.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
32.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
31.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
31.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
30.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
30.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
30.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
29.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
29.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
27.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
27.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
26.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
26.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
26.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
25.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
25.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
24.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
24.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
24.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
24.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
23.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
23.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
23.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
22.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
22.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
22.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
22.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
22.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
22.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
22.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
22.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
21.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
21.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
21.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
21.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
21.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
20.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
20.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
20.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
20.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
19.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
19.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
19.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
19.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
19.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
19.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
18.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
18.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
18.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
18.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
18.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
18.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
18.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
17.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
17.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
17.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
17.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
17.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
17.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
16.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
16.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
15.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
15.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
15.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
15.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
15.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
15.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
15.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
15.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
14.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
14.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
14.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
14.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
14.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
14.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
14.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
14.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
14.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
14.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
14.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
14.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
14.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
14.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
13.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
13.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
13.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
13.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
13.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
13.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
13.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
13.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
13.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
13.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
12.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
12.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
12.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
12.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
12.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
12.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
12.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
12.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
12.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
11.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
11.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
11.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
11.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
11.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
11.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
11.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
11.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
11.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
11.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
11.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
11.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
10.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
10.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
10.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
10.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
10.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
10.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
10.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
10.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
10.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
10.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
10.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
10.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
9.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
9.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
9.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
9.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
9.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
9.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
9.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
9.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
9.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
9.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
9.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
8.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
8.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
8.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
8.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
8.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
8.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
8.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
8.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
8.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
8.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
8.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
8.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
8.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
7.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
7.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
7.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
7.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
7.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
7.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
7.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
6.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
6.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
6.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
6.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
6.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
6.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
6.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
6.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
5.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
5.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
5.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
5.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
5.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
5.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
5.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
4.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
4.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
4.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
4.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
4.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
4.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
4.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
4.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
4.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
3.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
3.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
3.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
3.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
3.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
3.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
3.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
3.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
2.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
2.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
1.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
1.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1041
Tumor
1.4
911
Tumor
1.4
267
Tumor
1.2
913
Tumor
1.0
145
Tumor
0.9
427
Tumor
0.8
191
Tumor
0.8
873
Tumor
0.8
685
Tumor
0.7
663
Tumor
0.7
123
Tumor
0.7
465
Tumor
0.6
443
Tumor
0.6
221
Tumor
0.6
925
Tumor
0.5
231
Tumor
0.5
557
Tumor
0.5
513
Tumor
0.4
955
Tumor
0.4
187
Tumor
0.4
977
Tumor
0.4
477
Tumor
0.4
423
Tumor
0.4
451
Tumor
0.3
915
Tumor
0.3
452
Normal
0.3
1045
Tumor
0.3
981
Tumor
0.3
1042
Normal
0.3
1015
Tumor
0.3
982
Normal
0.3
464
Normal
0.3
388
Normal
0.3
777
Tumor
0.3
627
Tumor
0.3
746
Normal
0.3
268
Normal
0.3
1022
Normal
0.3
533
Tumor
0.3
648
Normal
0.3
136
Normal
0.3
112
Tumor
0.3
312
Normal
0.2
867
Tumor
0.2
413
Tumor
0.2
232
Normal
0.2
1032
Normal
0.2
426
Normal
0.2
314
Normal
0.2
368
Normal
0.2
484
Normal
0.2
878
Normal
0.2
884
Normal
0.2
367
Tumor
0.2
664
Normal
0.2
298
Normal
0.2
278
Normal
0.2
392
Normal
0.2
384
Normal
0.2
741
Tumor
0.2
444
Normal
0.2
1026
Normal
0.2
171
Tumor
0.2
428
Normal
0.2
1028
Normal
0.2
728
Normal
0.2
865
Tumor
0.2
341
Tumor
0.2
918
Normal
0.2
697
Tumor
0.2
222
Normal
0.2
138
Normal
0.1
132
Normal
0.1
914
Normal
0.1
778
Normal
0.1
882
Normal
0.1
916
Normal
0.1
461
Tumor
0.1
786
Normal
0.1
852
Normal
0.1
615
Tumor
0.1
785
Tumor
0.1
258
Normal
0.1
414
Normal
0.1
672
Normal
0.1
698
Normal
0.1
422
Normal
0.1
261
Tumor
0.1
528
Normal
0.1
864
Normal
0.1
917
Tumor
0.1
462
Normal
0.1
262
Normal
0.1
481
Tumor
0.1
546
Normal
0.1
922
Normal
0.1
362
Normal
0.1
446
Normal
0.1
142
Normal
0.1
214
Normal
0.1
478
Normal
0.1
395
Tumor
0.1
482
Normal
0.1
498
Normal
0.1
272
Normal
0.1
514
Normal
0.1
755
Tumor
0.1
424
Normal
0.1
662
Normal
0.1
926
Normal
0.1
937
Tumor
0.1
188
Normal
0.1
468
Normal
0.1
494
Normal
0.1
641
Tumor
0.1
1046
Normal
0.1
493
Tumor
0.1
146
Normal
0.1
956
Normal
0.1
365
Tumor
0.1
393
Tumor
0.1
416
Normal
0.1
376
Normal
0.1
715
Tumor
0.1
572
Normal
0.1
396
Normal
0.1
868
Normal
0.1
111
Normal
0.1
823
Tumor
0.1
642
Normal
0.1
745
Tumor
0.1
818
Normal
0.1
1014
Normal
0.1
912
Normal
0.1
954
Normal
0.1
456
Normal
0.1
738
Normal
0.1
924
Normal
0.1
114
Normal
0.1
978
Normal
0.1
488
Normal
0.1
558
Normal
0.1
445
Tumor
0.1
472
Normal
0.1
866
Normal
0.1
466
Normal
0.1
284
Normal
0.1
686
Normal
0.1
958
Normal
0.1
861
Tumor
0.1
172
Normal
0.1
126
Normal
0.1
436
Normal
0.1
984
Normal
0.1
128
Normal
0.1
361
Tumor
0.1
332
Normal
0.0
137
Tumor
0.0
964
Normal
0.0
1025
Tumor
0.0
148
Normal
0.0
742
Normal
0.0
277
Tumor
0.0
524
Normal
0.0
957
Tumor
0.0
474
Normal
0.0
666
Normal
0.0
564
Normal
0.0
824
Normal
0.0
618
Normal
0.0
228
Normal
0.0
695
Tumor
0.0
386
Normal
0.0
135
Tumor
0.0
433
Tumor
0.0
714
Normal
0.0
951
Tumor
0.0
366
Normal
0.0
616
Normal
0.0
716
Normal
0.0
313
Tumor
0.0
113
Tumor
0.0
327
Tumor
0.0
568
Normal
0.0
554
Normal
0.0
874
Normal
0.0
534
Normal
0.0
938
Normal
0.0
526
Normal
0.0
756
Normal
0.0
394
Normal
0.0
944
Normal
0.0
722
Normal
0.0
186
Normal
0.0
518
Normal
0.0
492
Normal
0.0
412
Normal
0.0
538
Normal
0.0
471
Tumor
0.0
211
Tumor
0.0
196
Normal
0.0
124
Normal
0.0
515
Tumor
0.0
723
Tumor
0.0
358
Normal
0.0
328
Normal
0.0
431
Tumor
0.0
636
Normal
0.0
921
Tumor
0.0
212
Normal
0.0
354
Normal
0.0
127
Tumor
0.0
497
Tumor
0.0
353
Tumor
0.0
857
Tumor
0.0
966
Normal
0.0
968
Normal
0.0
162
Normal
0.0
952
Normal
0.0
737
Tumor
0.0
425
Tumor
0.0
628
Normal
-0.1
1016
Normal
-0.1
863
Tumor
-0.1
744
Normal
-0.1
617
Tumor
-0.1
635
Tumor
-0.1
297
Tumor
-0.1
342
Normal
-0.1
483
Tumor
-0.1
364
Normal
-0.1
574
Normal
-0.1
975
Tumor
-0.1
432
Normal
-0.1
352
Normal
-0.1
516
Normal
-0.1
448
Normal
-0.1
387
Tumor
-0.1
862
Normal
-0.1
883
Tumor
-0.1
455
Tumor
-0.1
881
Tumor
-0.1
535
Tumor
-0.1
434
Normal
-0.1
976
Normal
-0.1
415
Tumor
-0.1
286
Normal
-0.1
696
Normal
-0.1
721
Tumor
-0.1
161
Tumor
-0.1
195
Tumor
-0.1
218
Normal
-0.1
858
Normal
-0.1
141
Tumor
-0.1
851
Tumor
-0.1
1027
Tumor
-0.1
553
Tumor
-0.1
523
Tumor
-0.1
816
Normal
-0.1
344
Normal
-0.1
311
Tumor
-0.2
331
Tumor
-0.2
185
Tumor
-0.2
435
Tumor
-0.2
814
Normal
-0.2
527
Tumor
-0.2
224
Normal
-0.2
217
Tumor
-0.2
192
Normal
-0.2
147
Tumor
-0.2
571
Tumor
-0.2
356
Normal
-0.2
421
Tumor
-0.2
983
Tumor
-0.2
463
Tumor
-0.2
1021
Tumor
-0.2
375
Tumor
-0.2
1031
Tumor
-0.2
536
Normal
-0.2
537
Tumor
-0.2
383
Tumor
-0.3
573
Tumor
-0.3
647
Tumor
-0.3
817
Tumor
-0.3
1044
Normal
-0.3
953
Tumor
-0.3
877
Tumor
-0.3
213
Tumor
-0.3
563
Tumor
-0.3
923
Tumor
-0.3
487
Tumor
-0.3
385
Tumor
-0.3
357
Tumor
-0.3
271
Tumor
-0.3
963
Tumor
-0.3
355
Tumor
-0.3
815
Tumor
-0.3
131
Tumor
-0.3
467
Tumor
-0.3
567
Tumor
-0.3
257
Tumor
-0.4
391
Tumor
-0.4
813
Tumor
-0.4
967
Tumor
-0.4
525
Tumor
-0.4
1013
Tumor
-0.4
965
Tumor
-0.4
943
Tumor
-0.4
447
Tumor
-0.4
223
Tumor
-0.4
517
Tumor
-0.4
671
Tumor
-0.5
491
Tumor
-0.5
545
Tumor
-0.5
343
Tumor
-0.5
125
Tumor
-0.5
473
Tumor
-0.5
743
Tumor
-0.5
665
Tumor
-0.5
227
Tumor
-0.5
411
Tumor
-0.5
713
Tumor
-0.6
363
Tumor
-0.6
285
Tumor
-0.6
351
Tumor
-0.7
1043
Tumor
-0.7
727
Tumor
-0.7
283
Tumor
-0.8
724
Normal
-0.8
661
Tumor
-1.4
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
