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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SCRIB is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
65.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
47.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
45.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
44.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
41.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
37.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
36.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
36.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
36.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
36.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
36.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
35.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
35.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
35.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
34.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
34.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
33.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
33.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
33.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
32.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
32.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
30.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
29.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
29.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
29.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
29.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
29.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
28.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
28.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
28.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
27.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
27.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
27.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
26.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
26.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
25.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
25.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
25.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
25.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
24.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
24.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
24.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
24.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
24.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
24.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
23.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
23.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
23.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
23.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
23.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
23.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
23.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
23.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
23.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
23.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
22.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
22.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
22.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
22.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
22.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
22.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
21.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
21.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
21.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
21.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
21.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
21.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
20.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
20.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
20.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
19.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
19.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
19.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
19.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
19.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
19.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
19.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
18.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
18.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
18.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
18.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
18.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
18.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
18.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
18.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
18.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
18.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
17.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
17.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
17.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
17.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
17.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
17.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
17.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
17.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
17.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
17.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
17.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
16.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
16.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
16.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
16.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
16.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
16.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
16.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
16.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
16.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
16.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
16.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
15.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
15.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
15.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
15.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
15.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
15.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
15.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
15.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
14.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
14.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
14.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
14.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
14.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
14.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
14.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
14.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
14.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
14.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
14.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
14.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
14.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
13.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
13.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
13.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
13.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
13.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
13.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
13.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
13.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
13.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
13.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
13.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
13.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
13.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
12.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
12.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
12.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
12.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
12.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
12.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
12.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
12.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
12.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
12.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
11.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
11.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
11.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
11.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
11.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
11.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
11.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
11.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
11.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
11.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
11.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
11.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
11.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
11.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
11.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
11.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
11.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
11.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
11.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
10.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
10.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
10.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
10.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
10.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
10.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
10.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
10.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
10.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
10.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
10.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
10.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
9.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
9.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
9.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
9.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
9.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
9.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
9.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
9.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
9.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
9.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
9.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
9.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
9.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
9.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
9.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
9.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
9.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
9.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
9.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
9.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
9.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
8.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
8.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
8.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
8.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
8.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
8.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
8.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
8.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
8.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
8.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
8.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
8.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
8.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
8.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
8.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
8.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
8.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
8.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
8.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
7.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
7.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
7.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
7.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
7.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
7.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
7.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
7.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
7.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
7.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
7.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
7.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
7.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
7.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
7.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
7.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
7.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
7.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
7.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
6.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
6.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
6.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
6.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
6.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
6.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
6.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
6.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
6.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
6.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
6.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
6.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
6.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
6.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
5.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
5.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
5.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
5.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
5.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
5.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
5.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
5.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
5.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
5.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
4.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
4.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
4.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
4.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
4.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
4.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
4.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
4.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
4.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
4.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
3.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
3.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
3.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
3.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
3.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
1.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SCRIB is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
18.5
Number of samples
231
Samples
Sample
Description
TPM
DO45269
0 years, male, NA, stage:3, alive, 750 days
73.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
72.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
70.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
66.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
64.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
62.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
60.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
59.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
50.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
49.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
48.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
48.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
45.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
44.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
43.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
42.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
42.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
40.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
37.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
37.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
35.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
33.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
33.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
32.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
32.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
32.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
31.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
30.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
29.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
29.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
29.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
29.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
28.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
28.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
28.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
28.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
27.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
27.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
27.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
27.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
27.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
27.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
26.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
26.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
26.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
25.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
25.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
24.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
24.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
24.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
24.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
23.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
23.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
23.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
22.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
22.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
22.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
22.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
22.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
22.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
22.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
21.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
21.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
21.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
21.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
21.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
21.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
21.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
21.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
21.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
21.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
21.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
20.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
20.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
20.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
20.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
20.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
20.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
20.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
20.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
20.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
19.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
19.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
19.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
19.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
19.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
19.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
19.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
19.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
19.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
18.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
18.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
18.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
18.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
18.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
18.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
17.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
17.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
17.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
17.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
16.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
16.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
16.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
16.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
16.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
16.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
16.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
16.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
16.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
16.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
15.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
15.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
15.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
15.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
15.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
15.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
15.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
15.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
15.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
15.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
14.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
14.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
14.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
14.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
14.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
14.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
14.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
14.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
14.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
14.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
13.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
13.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
13.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
13.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
13.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
13.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
13.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
13.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
13.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
13.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
13.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
12.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
12.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
12.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
12.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
12.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
12.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
12.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
11.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
11.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
11.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
11.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
11.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
11.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
11.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
10.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
10.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
10.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
10.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
10.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
10.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
10.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
10.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
9.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
9.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
9.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
9.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
9.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
9.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
9.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
9.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
9.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
9.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
9.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
9.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
8.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
8.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
8.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
8.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
8.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
8.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
8.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
8.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
8.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
8.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
8.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
7.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
7.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
7.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
7.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
7.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
7.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
6.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
6.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
6.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
6.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
6.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
6.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
6.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
5.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
5.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
5.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
4.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
3.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
3.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
3.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
3.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
267
Tumor
1.0
557
Tumor
0.8
1041
Tumor
0.8
231
Tumor
0.8
685
Tumor
0.7
641
Tumor
0.7
537
Tumor
0.7
937
Tumor
0.6
483
Tumor
0.6
865
Tumor
0.6
663
Tumor
0.5
471
Tumor
0.5
715
Tumor
0.5
367
Tumor
0.5
1025
Tumor
0.4
513
Tumor
0.4
873
Tumor
0.4
473
Tumor
0.4
161
Tumor
0.4
445
Tumor
0.4
221
Tumor
0.4
443
Tumor
0.4
341
Tumor
0.4
171
Tumor
0.4
951
Tumor
0.4
257
Tumor
0.4
313
Tumor
0.4
925
Tumor
0.4
271
Tumor
0.3
481
Tumor
0.3
421
Tumor
0.3
965
Tumor
0.3
127
Tumor
0.3
227
Tumor
0.3
123
Tumor
0.3
185
Tumor
0.3
395
Tumor
0.3
387
Tumor
0.3
331
Tumor
0.3
823
Tumor
0.3
967
Tumor
0.2
921
Tumor
0.2
911
Tumor
0.2
635
Tumor
0.2
957
Tumor
0.2
867
Tumor
0.2
534
Normal
0.2
435
Tumor
0.2
487
Tumor
0.2
737
Tumor
0.2
112
Tumor
0.2
484
Normal
0.2
915
Tumor
0.2
277
Tumor
0.1
964
Normal
0.1
881
Tumor
0.1
413
Tumor
0.1
427
Tumor
0.1
462
Normal
0.1
147
Tumor
0.1
615
Tumor
0.1
423
Tumor
0.1
477
Tumor
0.1
425
Tumor
0.1
868
Normal
0.1
1032
Normal
0.1
877
Tumor
0.1
482
Normal
0.1
958
Normal
0.1
297
Tumor
0.1
523
Tumor
0.1
698
Normal
0.1
1014
Normal
0.1
472
Normal
0.1
533
Tumor
0.1
1022
Normal
0.1
327
Tumor
0.1
665
Tumor
0.1
746
Normal
0.1
671
Tumor
0.1
1046
Normal
0.1
546
Normal
0.1
463
Tumor
0.1
426
Normal
0.1
648
Normal
0.1
786
Normal
0.1
824
Normal
0.1
616
Normal
0.1
461
Tumor
0.1
975
Tumor
0.1
488
Normal
0.1
135
Tumor
0.1
464
Normal
0.1
714
Normal
0.1
686
Normal
0.1
664
Normal
0.1
428
Normal
0.1
1042
Normal
0.1
924
Normal
0.0
756
Normal
0.0
191
Tumor
0.0
984
Normal
0.0
912
Normal
0.0
414
Normal
0.0
528
Normal
0.0
968
Normal
0.0
922
Normal
0.0
944
Normal
0.0
743
Tumor
0.0
416
Normal
0.0
465
Tumor
0.0
862
Normal
0.0
342
Normal
0.0
617
Tumor
0.0
883
Tumor
0.0
618
Normal
0.0
723
Tumor
0.0
187
Tumor
0.0
412
Normal
0.0
172
Normal
0.0
963
Tumor
0.0
1015
Tumor
0.0
232
Normal
0.0
131
Tumor
0.0
356
Normal
0.0
526
Normal
0.0
636
Normal
0.0
424
Normal
0.0
745
Tumor
0.0
298
Normal
0.0
493
Tumor
0.0
148
Normal
0.0
642
Normal
0.0
568
Normal
0.0
722
Normal
0.0
1028
Normal
0.0
858
Normal
0.0
882
Normal
0.0
627
Tumor
0.0
452
Normal
0.0
518
Normal
0.0
728
Normal
0.0
142
Normal
0.0
742
Normal
0.0
222
Normal
0.0
422
Normal
0.0
666
Normal
0.0
494
Normal
0.0
431
Tumor
0.0
228
Normal
0.0
1026
Normal
0.0
396
Normal
0.0
785
Tumor
0.0
132
Normal
0.0
466
Normal
0.0
628
Normal
0.0
393
Tumor
0.0
554
Normal
0.0
391
Tumor
0.0
515
Tumor
0.0
258
Normal
0.0
162
Normal
0.0
353
Tumor
0.0
777
Tumor
0.0
312
Normal
0.0
938
Normal
0.0
436
Normal
0.0
467
Tumor
0.0
716
Normal
0.0
286
Normal
0.0
468
Normal
0.0
866
Normal
0.0
982
Normal
0.0
497
Tumor
0.0
564
Normal
0.0
818
Normal
0.0
918
Normal
0.0
572
Normal
0.0
954
Normal
0.0
368
Normal
0.0
186
Normal
0.0
498
Normal
0.0
358
Normal
0.0
864
Normal
0.0
261
Tumor
0.0
136
Normal
0.0
344
Normal
0.0
474
Normal
0.0
364
Normal
0.0
926
Normal
0.0
662
Normal
-0.1
448
Normal
-0.1
111
Normal
-0.1
878
Normal
-0.1
332
Normal
-0.1
365
Tumor
-0.1
363
Tumor
-0.1
778
Normal
-0.1
284
Normal
-0.1
1016
Normal
-0.1
376
Normal
-0.1
976
Normal
-0.1
1021
Tumor
-0.1
738
Normal
-0.1
874
Normal
-0.1
196
Normal
-0.1
456
Normal
-0.1
558
Normal
-0.1
446
Normal
-0.1
514
Normal
-0.1
1027
Tumor
-0.1
385
Tumor
-0.1
328
Normal
-0.1
696
Normal
-0.1
415
Tumor
-0.1
114
Normal
-0.1
516
Normal
-0.1
272
Normal
-0.1
553
Tumor
-0.1
916
Normal
-0.1
278
Normal
-0.1
314
Normal
-0.1
262
Normal
-0.1
433
Tumor
-0.1
517
Tumor
-0.1
138
Normal
-0.1
388
Normal
-0.1
361
Tumor
-0.1
884
Normal
-0.1
956
Normal
-0.1
128
Normal
-0.1
913
Tumor
-0.1
697
Tumor
-0.1
851
Tumor
-0.1
721
Tumor
-0.1
212
Normal
-0.1
914
Normal
-0.1
1045
Tumor
-0.1
392
Normal
-0.1
354
Normal
-0.1
218
Normal
-0.1
113
Tumor
-0.1
478
Normal
-0.1
977
Tumor
-0.1
386
Normal
-0.1
852
Normal
-0.1
195
Tumor
-0.1
978
Normal
-0.1
727
Tumor
-0.1
268
Normal
-0.1
955
Tumor
-0.1
744
Normal
-0.1
1031
Tumor
-0.1
366
Normal
-0.1
1044
Normal
-0.1
574
Normal
-0.1
145
Tumor
-0.1
983
Tumor
-0.1
375
Tumor
-0.1
1013
Tumor
-0.1
223
Tumor
-0.1
352
Normal
-0.1
394
Normal
-0.1
817
Tumor
-0.1
362
Normal
-0.2
563
Tumor
-0.2
538
Normal
-0.2
444
Normal
-0.2
217
Tumor
-0.2
214
Normal
-0.2
816
Normal
-0.2
567
Tumor
-0.2
141
Tumor
-0.2
672
Normal
-0.2
192
Normal
-0.2
952
Normal
-0.2
524
Normal
-0.2
224
Normal
-0.2
146
Normal
-0.2
966
Normal
-0.2
432
Normal
-0.2
126
Normal
-0.2
124
Normal
-0.2
863
Tumor
-0.2
981
Tumor
-0.2
923
Tumor
-0.2
384
Normal
-0.2
451
Tumor
-0.2
283
Tumor
-0.2
355
Tumor
-0.2
861
Tumor
-0.3
857
Tumor
-0.3
815
Tumor
-0.3
492
Normal
-0.3
188
Normal
-0.3
285
Tumor
-0.3
755
Tumor
-0.3
434
Normal
-0.3
357
Tumor
-0.3
695
Tumor
-0.3
917
Tumor
-0.3
213
Tumor
-0.3
536
Normal
-0.3
571
Tumor
-0.4
525
Tumor
-0.4
535
Tumor
-0.4
455
Tumor
-0.4
1043
Tumor
-0.4
814
Normal
-0.4
137
Tumor
-0.4
813
Tumor
-0.4
741
Tumor
-0.4
713
Tumor
-0.4
351
Tumor
-0.4
573
Tumor
-0.5
343
Tumor
-0.5
953
Tumor
-0.5
661
Tumor
-0.5
527
Tumor
-0.5
943
Tumor
-0.5
383
Tumor
-0.5
411
Tumor
-0.5
647
Tumor
-0.5
545
Tumor
-0.5
447
Tumor
-0.5
491
Tumor
-0.6
125
Tumor
-0.6
311
Tumor
-0.6
211
Tumor
-0.7
724
Normal
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
