MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1.0 nTPM
HPA Brain:8.5 nTPM
GTEx:1.0 nTPM
FANTOM5:0.1 Scaled Tags Per Million
Pig:1.9 nTPM
Mouse:19.2 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 8.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 5.2
2019 Male, age 18, unknown 7.8
2411 Female, age 72, unknown 6.0
1827 Male, age 72, unknown 5.7
2666 Male, age 74, left hemisphere 5.6
2828 Female, age 72, unknown 5.1
2219 Male, age 76, both hemispheres 4.9
1833 Male, age 53, unknown 4.7
1870 Female, age 42, unknown 4.2
1830 Male, age 51, unknown 4.1
2586 Male, age 75, left hemisphere 3.8
Dorsal raphe nucleus
nTPM: 5.2
1828 Male, age 53, unknown 6.2
2298 Female, age 72, unknown 6.0
2047 Male, age 72, unknown 5.8
2750 Male, age 76, both hemispheres 4.6
2016 Female, age 72, unknown 3.6
Inferior colliculus
nTPM: 6.6
1848 Female, age 42, unknown 11.7
2849 Male, age 72, unknown 8.4
2097 Female, age 72, unknown 3.9
1890 Male, age 53, unknown 2.6
Median raphe nucleus
nTPM: 6.0
2220 Male, age 76, midline 6.0
Periaquaductal grey, anterior
nTPM: 6.3
2502 Female, age 75, unknown 8.6
1947 Male, age 18, unknown 5.9
1795 Male, age 51, unknown 4.4
Periaquaductal grey, dorsal
nTPM: 5.6
2850 Male, age 76, both hemispheres 6.7
1840 Male, age 53, unknown 6.4
2464 Female, age 72, unknown 6.1
1831 Male, age 72, unknown 2.9
Periaquaductal grey, lateral
nTPM: 5.0
2140 Male, age 76, both hemispheres 6.5
2053 Male, age 18, unknown 4.6
2272 Male, age 74, both hemispheres 4.0
Pretectal area
nTPM: 8.5
1816 Male, age 51, unknown 14.1
1817 Female, age 42, unknown 13.5
2007 Male, age 72, unknown 10.4
2316 Male, age 76, right hemisphere 9.1
1815 Male, age 53, unknown 8.7
1944 Female, age 72, unknown 8.0
2224 Female, age 72, unknown 7.0
2667 Female, age 75, unknown 6.4
2825 Male, age 18, unknown 6.4
2407 Male, age 75, both hemispheres 5.6
2273 Male, age 74, both hemispheres 4.0
Red nucleus
nTPM: 7.1
2503 Female, age 72, unknown 9.6
1954 Female, age 42, unknown 9.0
1821 Female, age 72, unknown 7.7
1904 Male, age 53, unknown 7.6
2785 Male, age 18, unknown 7.6
2823 Male, age 76, right hemisphere 7.5
1865 Male, age 51, unknown 7.0
2588 Male, age 74, left hemisphere 6.9
2227 Male, age 72, unknown 6.8
2769 Male, age 72, unknown 6.8
2584 Male, age 75, left hemisphere 4.4
2725 Female, age 75, unknown 4.3
Substantia nigra
nTPM: 3.4
1889 Female, age 72, unknown 9.2
1941 Male, age 53, unknown 4.7
2590 Female, age 75, unknown 4.6
2665 Male, age 74, both hemispheres 3.5
2241 Male, age 72, unknown 2.9
2583 Male, age 75, right hemisphere 2.5
1851 Male, age 51, unknown 2.0
2699 Male, age 18, unknown 2.0
2409 Female, age 72, unknown 1.8
1916 Female, age 42, unknown 1.2
Superior colliculus
nTPM: 7.6
1895 Male, age 76, right hemisphere 11.8
2087 Female, age 72, unknown 10.5
1839 Male, age 51, unknown 8.8
2261 Male, age 18, unknown 8.3
2668 Female, age 75, unknown 7.1
2587 Male, age 74, left hemisphere 6.4
1796 Male, age 53, unknown 5.8
1995 Male, age 72, unknown 5.8
2664 Male, age 75, both hemispheres 5.5
1913 Female, age 42, unknown 5.3
Ventral tegmental area
nTPM: 3.5
2410 Female, age 72, unknown 5.1
2021 Male, age 53, unknown 3.8
1942 Male, age 51, unknown 3.6
2218 Male, age 76, both hemispheres 3.1
1915 Female, age 42, unknown 2.8
2223 Female, age 72, unknown 2.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 1.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1.0
Samples: 139

Max nTPM: 9.6
Min nTPM: 0.0
Std nTPM: 1.3
Median nTPM: 0.6
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 9.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 7.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 5.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 4.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 4.1
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 3.2
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 3.1
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 3.1
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 2.9
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 2.8
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 2.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 0.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 0.1
FF:10158-103A5 76 years, female 0.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 1.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 0.9
Samples: 4

Max nTPM: 1.5
Min nTPM: 0.3
Sample A Female 1.2
Sample B Female 1.5
Sample C Male 0.6
Sample D Male 0.3
Midbrain
nTPM: 1.8
Samples: 4

Max nTPM: 5.6
Min nTPM: 0.4
Sample A Female 0.8
Sample B Female 0.4
Sample C Male 5.6
Sample D Male 0.4
Periaqueductal gray
nTPM: 0.5
Samples: 3

Max nTPM: 1.0
Min nTPM: 0.3
Sample B Female 0.3
Sample C Male 1.0
Sample D Male 0.3
Superior colliculi
nTPM: 1.9
Samples: 4

Max nTPM: 3.9
Min nTPM: 0.5
Sample A Female 0.5
Sample B Female 2.2
Sample C Male 3.9
Sample D Male 0.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 19.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 19.2
Samples: 4

Max nTPM: 20.9
Min nTPM: 16.2
Sample A Male 16.2
Sample B Male 19.8
Sample C Female 20.9
Sample D Female 19.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
73992910 Antisense, RP_051214_01_F04, Mouse strain C57BL/6J (56 days, male) 0.3
69734590 Antisense, RP_050503_01_C03, Mouse strain C57BL/6J (56 days, male) 0.1

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