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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PPA1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
99.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
297.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
292.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
257.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
248.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
241.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
233.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
233.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
226.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
218.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
212.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
208.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
205.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
203.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
202.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
197.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
192.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
187.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
185.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
184.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
184.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
182.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
181.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
180.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
180.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
175.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
174.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
171.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
170.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
169.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
169.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
168.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
166.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
165.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
161.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
155.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
155.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
155.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
152.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
152.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
151.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
150.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
147.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
146.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
146.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
146.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
144.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
143.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
141.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
141.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
141.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
140.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
140.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
139.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
139.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
138.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
138.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
136.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
136.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
136.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
135.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
134.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
134.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
134.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
133.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
133.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
132.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
132.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
131.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
131.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
131.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
131.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
130.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
129.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
129.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
129.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
128.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
128.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
128.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
127.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
127.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
126.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
124.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
124.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
123.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
122.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
122.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
122.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
122.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
121.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
121.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
120.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
120.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
119.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
119.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
119.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
118.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
118.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
117.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
117.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
117.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
116.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
116.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
116.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
116.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
116.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
115.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
115.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
115.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
114.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
114.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
114.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
114.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
113.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
113.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
113.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
112.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
112.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
112.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
112.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
111.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
111.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
110.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
108.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
108.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
108.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
107.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
107.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
107.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
106.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
106.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
106.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
105.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
105.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
104.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
104.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
104.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
104.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
104.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
103.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
103.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
103.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
102.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
102.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
102.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
101.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
101.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
101.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
101.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
100.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
100.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
100.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
100.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
100.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
100.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
100.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
99.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
99.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
99.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
98.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
98.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
98.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
98.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
98.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
98.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
98.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
98.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
97.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
97.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
97.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
97.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
96.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
96.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
96.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
96.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
96.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
96.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
95.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
95.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
95.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
95.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
95.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
94.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
94.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
94.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
93.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
93.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
93.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
93.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
93.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
92.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
92.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
92.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
92.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
91.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
91.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
90.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
90.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
90.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
90.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
90.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
89.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
89.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
87.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
87.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
86.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
86.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
86.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
85.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
84.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
84.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
84.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
84.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
84.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
84.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
84.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
83.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
83.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
83.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
83.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
83.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
83.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
83.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
82.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
82.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
82.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
81.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
80.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
80.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
80.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
80.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
79.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
79.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
79.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
79.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
79.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
79.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
78.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
78.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
78.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
77.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
77.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
77.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
77.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
77.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
77.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
77.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
76.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
76.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
76.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
75.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
75.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
75.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
74.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
74.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
74.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
74.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
74.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
73.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
72.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
71.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
71.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
70.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
70.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
70.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
69.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
69.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
68.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
68.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
68.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
68.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
68.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
67.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
67.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
67.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
66.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
66.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
66.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
66.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
64.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
64.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
64.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
64.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
64.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
63.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
62.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
60.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
60.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
60.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
59.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
59.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
59.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
59.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
59.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
59.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
58.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
58.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
58.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
58.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
58.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
58.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
57.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
57.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
57.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
57.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
56.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
56.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
55.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
55.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
55.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
55.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
54.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
54.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
54.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
53.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
52.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
52.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
52.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
52.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
51.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
50.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
49.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
49.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
49.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
48.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
48.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
47.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
47.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
46.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
46.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
45.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
45.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
45.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
45.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
45.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
45.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
43.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
42.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
40.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
40.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
40.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
38.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
38.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
38.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
38.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
37.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
33.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
33.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
33.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
33.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
32.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
31.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
30.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
29.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
28.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
28.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
26.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
26.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
24.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
19.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
18.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
18.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PPA1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
102.4
Number of samples
231
Samples
Sample
Description
TPM
DO45203
0 years, female, NA, stage:2, alive, 1170 days
301.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
271.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
251.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
250.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
243.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
236.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
227.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
208.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
206.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
199.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
196.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
194.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
190.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
189.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
185.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
183.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
182.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
177.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
177.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
175.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
175.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
175.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
172.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
167.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
166.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
164.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
163.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
163.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
160.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
157.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
154.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
154.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
153.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
152.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
151.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
151.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
150.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
149.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
149.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
148.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
148.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
147.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
146.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
145.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
144.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
144.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
142.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
141.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
141.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
140.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
137.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
137.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
136.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
136.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
135.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
133.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
133.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
133.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
132.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
132.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
130.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
129.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
129.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
129.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
127.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
127.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
126.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
125.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
125.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
123.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
121.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
121.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
120.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
120.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
120.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
119.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
118.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
118.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
117.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
116.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
115.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
114.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
114.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
114.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
114.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
114.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
111.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
110.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
109.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
108.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
108.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
106.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
106.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
106.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
106.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
105.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
104.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
103.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
103.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
102.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
101.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
100.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
100.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
99.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
99.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
98.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
98.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
98.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
98.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
97.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
97.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
97.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
97.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
96.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
94.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
94.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
94.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
94.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
93.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
93.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
93.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
93.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
90.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
88.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
88.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
88.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
87.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
86.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
86.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
85.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
85.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
85.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
84.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
83.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
83.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
81.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
81.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
81.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
81.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
80.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
80.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
80.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
79.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
79.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
79.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
79.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
78.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
77.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
77.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
77.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
76.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
76.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
76.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
75.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
75.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
75.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
75.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
74.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
74.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
72.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
72.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
70.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
70.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
70.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
70.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
69.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
69.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
68.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
68.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
68.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
68.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
67.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
67.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
66.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
66.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
66.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
65.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
64.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
64.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
63.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
63.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
63.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
63.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
63.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
63.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
62.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
62.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
61.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
60.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
59.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
59.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
58.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
58.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
57.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
57.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
53.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
52.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
52.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
52.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
51.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
50.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
49.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
48.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
47.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
46.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
45.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
43.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
41.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
41.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
39.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
36.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
36.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
36.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
35.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
35.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
35.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
34.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
33.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
32.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
32.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
31.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
30.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
29.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
27.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
26.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
25.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
24.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
23.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
19.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
10.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
4.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
227
Tumor
1.8
685
Tumor
1.3
967
Tumor
1.3
1021
Tumor
1.1
363
Tumor
1.1
557
Tumor
1.0
1043
Tumor
1.0
1025
Tumor
0.9
553
Tumor
0.9
881
Tumor
0.9
271
Tumor
0.9
951
Tumor
0.9
387
Tumor
0.9
327
Tumor
0.8
745
Tumor
0.8
921
Tumor
0.8
925
Tumor
0.8
471
Tumor
0.8
113
Tumor
0.7
713
Tumor
0.7
1031
Tumor
0.7
537
Tumor
0.7
147
Tumor
0.7
817
Tumor
0.7
1027
Tumor
0.6
213
Tumor
0.6
981
Tumor
0.6
635
Tumor
0.6
477
Tumor
0.6
641
Tumor
0.6
937
Tumor
0.6
697
Tumor
0.6
135
Tumor
0.6
567
Tumor
0.5
467
Tumor
0.5
443
Tumor
0.5
421
Tumor
0.5
755
Tumor
0.5
861
Tumor
0.5
923
Tumor
0.5
661
Tumor
0.5
975
Tumor
0.4
517
Tumor
0.4
483
Tumor
0.4
715
Tumor
0.4
413
Tumor
0.4
195
Tumor
0.4
883
Tumor
0.4
257
Tumor
0.4
231
Tumor
0.3
411
Tumor
0.3
571
Tumor
0.3
221
Tumor
0.3
721
Tumor
0.3
851
Tumor
0.3
857
Tumor
0.3
455
Tumor
0.3
915
Tumor
0.3
815
Tumor
0.3
963
Tumor
0.3
823
Tumor
0.3
983
Tumor
0.3
533
Tumor
0.2
1041
Tumor
0.2
393
Tumor
0.2
285
Tumor
0.2
127
Tumor
0.2
867
Tumor
0.2
813
Tumor
0.2
277
Tumor
0.2
367
Tumor
0.2
493
Tumor
0.2
137
Tumor
0.2
361
Tumor
0.1
185
Tumor
0.1
123
Tumor
0.1
331
Tumor
0.1
435
Tumor
0.1
145
Tumor
0.1
873
Tumor
0.1
727
Tumor
0.1
647
Tumor
0.1
262
Normal
0.1
451
Tumor
0.1
395
Tumor
0.1
131
Tumor
0.1
188
Normal
0.1
431
Tumor
0.0
353
Tumor
0.0
217
Tumor
0.0
481
Tumor
0.0
434
Normal
0.0
814
Normal
0.0
267
Tumor
0.0
191
Tumor
0.0
695
Tumor
0.0
311
Tumor
0.0
126
Normal
0.0
563
Tumor
0.0
268
Normal
0.0
114
Normal
0.0
112
Tumor
0.0
341
Tumor
0.0
525
Tumor
0.0
362
Normal
0.0
391
Tumor
0.0
955
Tumor
0.0
746
Normal
0.0
351
Tumor
0.0
523
Tumor
-0.1
1044
Normal
-0.1
1028
Normal
-0.1
385
Tumor
-0.1
171
Tumor
-0.1
978
Normal
-0.1
161
Tumor
-0.1
558
Normal
-0.1
492
Normal
-0.1
433
Tumor
-0.1
187
Tumor
-0.1
916
Normal
-0.1
297
Tumor
-0.1
917
Tumor
-0.1
214
Normal
-0.1
538
Normal
-0.1
128
Normal
-0.1
741
Tumor
-0.1
141
Tumor
-0.1
617
Tumor
-0.1
816
Normal
-0.1
223
Tumor
-0.1
465
Tumor
-0.1
272
Normal
-0.1
447
Tumor
-0.1
914
Normal
-0.1
357
Tumor
-0.2
212
Normal
-0.2
111
Normal
-0.2
642
Normal
-0.2
261
Tumor
-0.2
965
Tumor
-0.2
386
Normal
-0.2
416
Normal
-0.2
368
Normal
-0.2
1022
Normal
-0.2
527
Tumor
-0.2
615
Tumor
-0.2
125
Tumor
-0.2
355
Tumor
-0.2
957
Tumor
-0.2
473
Tumor
-0.2
874
Normal
-0.2
956
Normal
-0.2
366
Normal
-0.2
278
Normal
-0.2
977
Tumor
-0.2
468
Normal
-0.2
344
Normal
-0.2
474
Normal
-0.2
218
Normal
-0.2
258
Normal
-0.2
966
Normal
-0.2
722
Normal
-0.2
284
Normal
-0.2
662
Normal
-0.2
968
Normal
-0.2
724
Normal
-0.2
444
Normal
-0.2
172
Normal
-0.2
884
Normal
-0.2
516
Normal
-0.2
138
Normal
-0.2
616
Normal
-0.2
124
Normal
-0.2
865
Tumor
-0.2
785
Tumor
-0.2
686
Normal
-0.2
1026
Normal
-0.2
723
Tumor
-0.2
448
Normal
-0.2
924
Normal
-0.2
136
Normal
-0.2
728
Normal
-0.2
314
Normal
-0.3
312
Normal
-0.3
228
Normal
-0.3
982
Normal
-0.3
877
Tumor
-0.3
952
Normal
-0.3
696
Normal
-0.3
671
Tumor
-0.3
478
Normal
-0.3
852
Normal
-0.3
211
Tumor
-0.3
375
Tumor
-0.3
535
Tumor
-0.3
224
Normal
-0.3
1042
Normal
-0.3
714
Normal
-0.3
445
Tumor
-0.3
328
Normal
-0.3
132
Normal
-0.3
911
Tumor
-0.3
384
Normal
-0.3
365
Tumor
-0.3
628
Normal
-0.3
286
Normal
-0.3
944
Normal
-0.3
436
Normal
-0.3
953
Tumor
-0.3
463
Tumor
-0.3
554
Normal
-0.3
528
Normal
-0.3
568
Normal
-0.3
426
Normal
-0.3
866
Normal
-0.3
698
Normal
-0.3
1013
Tumor
-0.3
976
Normal
-0.3
573
Tumor
-0.3
446
Normal
-0.3
415
Tumor
-0.3
148
Normal
-0.3
526
Normal
-0.3
432
Normal
-0.3
232
Normal
-0.3
743
Tumor
-0.3
824
Normal
-0.3
392
Normal
-0.3
388
Normal
-0.3
546
Normal
-0.3
472
Normal
-0.3
913
Tumor
-0.3
545
Tumor
-0.3
868
Normal
-0.3
422
Normal
-0.4
878
Normal
-0.4
524
Normal
-0.4
918
Normal
-0.4
666
Normal
-0.4
466
Normal
-0.4
186
Normal
-0.4
162
Normal
-0.4
716
Normal
-0.4
882
Normal
-0.4
192
Normal
-0.4
518
Normal
-0.4
298
Normal
-0.4
427
Tumor
-0.4
778
Normal
-0.4
514
Normal
-0.4
954
Normal
-0.4
648
Normal
-0.4
818
Normal
-0.4
383
Tumor
-0.4
396
Normal
-0.4
412
Normal
-0.4
494
Normal
-0.4
1014
Normal
-0.4
574
Normal
-0.4
572
Normal
-0.4
394
Normal
-0.4
958
Normal
-0.4
564
Normal
-0.4
636
Normal
-0.4
742
Normal
-0.4
146
Normal
-0.4
738
Normal
-0.4
332
Normal
-0.4
414
Normal
-0.4
354
Normal
-0.4
424
Normal
-0.4
222
Normal
-0.4
456
Normal
-0.4
356
Normal
-0.4
926
Normal
-0.4
498
Normal
-0.4
786
Normal
-0.5
938
Normal
-0.5
452
Normal
-0.5
1032
Normal
-0.5
423
Tumor
-0.5
343
Tumor
-0.5
922
Normal
-0.5
858
Normal
-0.5
497
Tumor
-0.5
376
Normal
-0.5
142
Normal
-0.5
196
Normal
-0.5
358
Normal
-0.5
534
Normal
-0.5
536
Normal
-0.5
1045
Tumor
-0.5
491
Tumor
-0.5
352
Normal
-0.5
1016
Normal
-0.5
364
Normal
-0.5
488
Normal
-0.5
618
Normal
-0.5
1046
Normal
-0.5
665
Tumor
-0.5
482
Normal
-0.5
464
Normal
-0.5
664
Normal
-0.5
912
Normal
-0.5
964
Normal
-0.6
425
Tumor
-0.6
943
Tumor
-0.6
513
Tumor
-0.6
862
Normal
-0.6
737
Tumor
-0.6
462
Normal
-0.6
777
Tumor
-0.6
984
Normal
-0.6
313
Tumor
-0.6
756
Normal
-0.6
283
Tumor
-0.6
428
Normal
-0.6
342
Normal
-0.6
744
Normal
-0.6
627
Tumor
-0.6
864
Normal
-0.7
515
Tumor
-0.7
461
Tumor
-0.7
672
Normal
-0.7
1015
Tumor
-0.7
484
Normal
-0.7
487
Tumor
-0.9
663
Tumor
-1.2
863
Tumor
-1.4
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.