MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:2.9 nTPM
HPA Brain:10.7 nTPM
GTEx:2.9 nTPM
FANTOM5:20.9 Scaled Tags Per Million
Mouse:8.6 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 10.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 8.8
2219 Male, age 76, both hemispheres 11.8
1833 Male, age 53, unknown 10.2
1830 Male, age 51, unknown 9.6
1870 Female, age 42, unknown 9.2
2019 Male, age 18, unknown 8.9
2411 Female, age 72, unknown 8.6
1827 Male, age 72, unknown 8.5
2828 Female, age 72, unknown 7.7
2666 Male, age 74, left hemisphere 7.1
2586 Male, age 75, left hemisphere 6.8
Dorsal raphe nucleus
nTPM: 9.0
2016 Female, age 72, unknown 10.9
1828 Male, age 53, unknown 9.5
2298 Female, age 72, unknown 9.2
2750 Male, age 76, both hemispheres 8.0
2047 Male, age 72, unknown 7.5
Inferior colliculus
nTPM: 9.7
1848 Female, age 42, unknown 10.5
2849 Male, age 72, unknown 10.4
1890 Male, age 53, unknown 9.5
2097 Female, age 72, unknown 8.6
Median raphe nucleus
nTPM: 8.9
2220 Male, age 76, midline 8.9
Periaquaductal grey, anterior
nTPM: 9.3
1947 Male, age 18, unknown 9.9
2502 Female, age 75, unknown 9.4
1795 Male, age 51, unknown 8.5
Periaquaductal grey, dorsal
nTPM: 10.1
2850 Male, age 76, both hemispheres 12.9
1840 Male, age 53, unknown 9.7
1831 Male, age 72, unknown 9.2
2464 Female, age 72, unknown 8.4
Periaquaductal grey, lateral
nTPM: 10.7
2272 Male, age 74, both hemispheres 12.6
2140 Male, age 76, both hemispheres 10.8
2053 Male, age 18, unknown 8.6
Pretectal area
nTPM: 9.1
2273 Male, age 74, both hemispheres 12.4
2667 Female, age 75, unknown 9.5
1815 Male, age 53, unknown 9.4
2224 Female, age 72, unknown 9.4
2825 Male, age 18, unknown 9.3
2407 Male, age 75, both hemispheres 8.7
1817 Female, age 42, unknown 8.6
2316 Male, age 76, right hemisphere 8.6
1816 Male, age 51, unknown 8.4
1944 Female, age 72, unknown 7.9
2007 Male, age 72, unknown 7.9
Red nucleus
nTPM: 9.8
1904 Male, age 53, unknown 11.0
1954 Female, age 42, unknown 10.7
1821 Female, age 72, unknown 10.6
1865 Male, age 51, unknown 10.5
2725 Female, age 75, unknown 10.3
2227 Male, age 72, unknown 10.1
2503 Female, age 72, unknown 10.1
2769 Male, age 72, unknown 9.5
2823 Male, age 76, right hemisphere 9.5
2785 Male, age 18, unknown 9.3
2588 Male, age 74, left hemisphere 9.1
2584 Male, age 75, left hemisphere 7.3
Substantia nigra
nTPM: 8.9
2699 Male, age 18, unknown 11.0
2241 Male, age 72, unknown 10.8
2409 Female, age 72, unknown 9.3
1889 Female, age 72, unknown 8.8
2590 Female, age 75, unknown 8.8
1851 Male, age 51, unknown 8.6
2583 Male, age 75, right hemisphere 8.4
2665 Male, age 74, both hemispheres 8.4
1916 Female, age 42, unknown 8.0
1941 Male, age 53, unknown 7.3
Superior colliculus
nTPM: 8.6
1895 Male, age 76, right hemisphere 9.9
1995 Male, age 72, unknown 9.7
1839 Male, age 51, unknown 9.2
2587 Male, age 74, left hemisphere 9.2
1913 Female, age 42, unknown 9.1
2087 Female, age 72, unknown 8.2
2261 Male, age 18, unknown 7.9
1796 Male, age 53, unknown 7.8
2668 Female, age 75, unknown 7.7
2664 Male, age 75, both hemispheres 7.3
Ventral tegmental area
nTPM: 8.4
2218 Male, age 76, both hemispheres 9.3
2410 Female, age 72, unknown 9.0
2223 Female, age 72, unknown 8.3
2021 Male, age 53, unknown 8.1
1942 Male, age 51, unknown 8.0
1915 Female, age 42, unknown 7.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 2.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2.9
Samples: 139

Max nTPM: 4.9
Min nTPM: 1.2
Std nTPM: 0.7
Median nTPM: 2.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 4.9
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 4.7
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 4.6
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 4.6
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 4.4
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 4.3
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 4.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 4.0
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 4.0
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 3.9
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 3.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 20.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 20.9
FF:10158-103A5 76 years, female 20.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 8.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 8.6
Samples: 4

Max nTPM: 8.9
Min nTPM: 8.3
Sample A Male 8.9
Sample B Male 8.7
Sample C Female 8.4
Sample D Female 8.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
69288602 Antisense, RP_050407_01_C10, Mouse strain C57BL/6J (56 days, male) 0.3

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