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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PCGF5 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
25.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
17.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
15.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
15.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
13.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
13.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
13.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
13.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
13.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
12.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
12.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
12.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
12.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
12.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
12.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
12.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
11.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
11.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
11.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
11.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
11.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
10.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
10.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
10.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
10.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
10.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
10.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
10.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
10.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
9.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
9.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
9.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
9.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
9.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
9.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
9.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
9.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
9.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
9.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
9.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
9.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
9.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
9.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
9.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
9.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
8.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
8.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
8.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
8.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
8.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
8.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
8.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
8.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
8.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
8.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
8.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
8.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
8.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
8.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
8.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
8.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
8.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
8.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
8.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
8.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
8.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
8.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
8.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
7.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
7.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
7.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
7.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
7.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
7.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
7.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
7.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
7.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
7.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
7.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
7.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
7.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
7.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
7.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
7.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
7.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
7.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
7.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
7.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
7.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
6.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
6.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
6.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
6.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
6.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
6.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
6.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
6.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
6.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
6.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
6.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
6.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
6.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
6.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
6.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
6.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
6.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
6.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
6.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
6.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
6.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
6.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
6.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
5.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
5.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
5.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
5.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
5.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
5.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
5.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
5.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
5.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
5.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
5.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
5.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
5.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
5.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
5.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
5.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
5.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
5.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
5.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
5.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
5.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
5.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
5.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
5.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
5.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
5.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
5.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
5.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
5.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
5.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
4.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
4.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
4.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
4.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
4.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
4.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
4.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
4.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
4.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
4.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
4.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
4.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
4.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
4.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
4.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
4.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
4.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
4.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
4.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
4.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
4.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
4.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
4.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
4.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
3.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
3.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
3.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
3.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
3.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
3.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
3.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
3.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
3.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
3.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
3.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
3.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
3.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
3.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
3.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
3.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
3.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
3.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
3.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
3.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
3.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
3.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
2.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
2.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
2.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
2.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
2.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
2.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
2.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
2.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
1.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
1.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
1.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
1.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
1.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
1.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
1.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PCGF5 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.8
Number of samples
231
Samples
Sample
Description
TPM
DO45119
0 years, male, NA, stage:3, dead, 510 days
21.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
19.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
18.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
15.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
14.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
14.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
14.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
13.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
13.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
12.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
12.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
12.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
11.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
11.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
11.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
11.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
11.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
11.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
10.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
10.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
10.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
10.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
10.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
10.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
10.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
10.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
10.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
9.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
9.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
9.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
9.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
9.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
9.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
9.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
9.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
9.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
9.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
9.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
9.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
9.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
9.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
9.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
8.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
8.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
8.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
8.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
8.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
8.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
8.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
8.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
8.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
8.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
8.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
8.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
8.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
8.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
8.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
8.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
8.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
8.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
7.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
7.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
7.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
7.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
7.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
7.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
7.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
7.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
7.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
7.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
7.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
7.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
7.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
7.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
7.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
7.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
7.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
7.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
7.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
7.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
7.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
7.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
7.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
6.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
6.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
6.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
6.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
6.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
6.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
6.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
6.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
6.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
6.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
6.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
6.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
6.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
6.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
6.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
6.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
6.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
6.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
6.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
6.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
6.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
6.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
6.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
6.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
6.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
6.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
6.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
6.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
5.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
5.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
5.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
5.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
5.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
5.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
5.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
5.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
5.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
5.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
5.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
5.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
5.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
5.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
5.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
5.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
5.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
5.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
5.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
5.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
5.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
5.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
5.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
5.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
5.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
5.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
5.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
5.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
5.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
5.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
5.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
5.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
5.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
4.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
4.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
4.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
4.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
4.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
4.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
4.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
4.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
4.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
4.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
4.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
4.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
4.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
4.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
4.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
4.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
4.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
4.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
4.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
4.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
4.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
4.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
4.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
4.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
4.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
4.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
4.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
3.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
3.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
3.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
3.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
3.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
3.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
3.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
3.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
3.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
3.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
3.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
3.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
3.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
3.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
3.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
3.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
3.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
3.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
3.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
2.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
2.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
2.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
2.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
2.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
2.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
1.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
1.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
1.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
473
Tumor
1.1
685
Tumor
1.1
817
Tumor
0.9
463
Tumor
0.9
467
Tumor
0.8
695
Tumor
0.8
743
Tumor
0.8
395
Tumor
0.7
967
Tumor
0.7
724
Normal
0.7
983
Tumor
0.7
186
Normal
0.7
385
Tumor
0.7
172
Normal
0.6
923
Tumor
0.6
917
Tumor
0.6
211
Tumor
0.6
387
Tumor
0.6
937
Tumor
0.6
455
Tumor
0.6
727
Tumor
0.6
123
Tumor
0.6
487
Tumor
0.6
1031
Tumor
0.6
865
Tumor
0.5
443
Tumor
0.5
777
Tumor
0.5
411
Tumor
0.5
1021
Tumor
0.5
737
Tumor
0.5
351
Tumor
0.5
977
Tumor
0.5
147
Tumor
0.5
451
Tumor
0.4
755
Tumor
0.4
951
Tumor
0.4
635
Tumor
0.4
925
Tumor
0.4
465
Tumor
0.4
861
Tumor
0.4
965
Tumor
0.4
367
Tumor
0.4
478
Normal
0.4
285
Tumor
0.4
393
Tumor
0.4
534
Normal
0.4
162
Normal
0.4
535
Tumor
0.4
1041
Tumor
0.4
227
Tumor
0.4
126
Normal
0.3
528
Normal
0.3
553
Tumor
0.3
953
Tumor
0.3
112
Tumor
0.3
523
Tumor
0.3
127
Tumor
0.3
477
Tumor
0.3
957
Tumor
0.3
391
Tumor
0.3
464
Normal
0.3
617
Tumor
0.3
921
Tumor
0.3
111
Normal
0.3
491
Tumor
0.3
415
Tumor
0.3
456
Normal
0.3
148
Normal
0.3
785
Tumor
0.3
433
Tumor
0.3
493
Tumor
0.3
223
Tumor
0.3
963
Tumor
0.3
353
Tumor
0.3
492
Normal
0.2
355
Tumor
0.2
647
Tumor
0.2
641
Tumor
0.2
686
Normal
0.2
1013
Tumor
0.2
488
Normal
0.2
484
Normal
0.2
114
Normal
0.2
713
Tumor
0.2
943
Tumor
0.2
431
Tumor
0.2
188
Normal
0.2
744
Normal
0.2
533
Tumor
0.2
517
Tumor
0.2
497
Tumor
0.2
185
Tumor
0.2
128
Normal
0.2
916
Normal
0.2
554
Normal
0.2
1014
Normal
0.2
363
Tumor
0.2
741
Tumor
0.2
981
Tumor
0.2
361
Tumor
0.2
471
Tumor
0.2
386
Normal
0.2
873
Tumor
0.2
976
Normal
0.2
412
Normal
0.2
416
Normal
0.2
483
Tumor
0.2
161
Tumor
0.1
435
Tumor
0.1
813
Tumor
0.1
982
Normal
0.1
362
Normal
0.1
938
Normal
0.1
468
Normal
0.1
698
Normal
0.1
358
Normal
0.1
356
Normal
0.1
343
Tumor
0.1
546
Normal
0.1
918
Normal
0.1
984
Normal
0.1
545
Tumor
0.1
222
Normal
0.1
715
Tumor
0.1
944
Normal
0.1
217
Tumor
0.1
494
Normal
0.1
964
Normal
0.1
955
Tumor
0.1
192
Normal
0.1
214
Normal
0.1
498
Normal
0.1
527
Tumor
0.1
352
Normal
0.1
283
Tumor
0.1
445
Tumor
0.1
978
Normal
0.1
924
Normal
0.1
187
Tumor
0.1
867
Tumor
0.1
538
Normal
0.1
954
Normal
0.1
383
Tumor
0.1
1025
Tumor
0.1
342
Normal
0.1
1027
Tumor
0.1
721
Tumor
0.0
922
Normal
0.0
958
Normal
0.0
661
Tumor
0.0
857
Tumor
0.0
344
Normal
0.0
472
Normal
0.0
392
Normal
0.0
722
Normal
0.0
915
Tumor
0.0
968
Normal
0.0
466
Normal
0.0
452
Normal
0.0
354
Normal
0.0
966
Normal
0.0
396
Normal
0.0
388
Normal
0.0
814
Normal
0.0
394
Normal
0.0
515
Tumor
0.0
975
Tumor
0.0
196
Normal
0.0
714
Normal
0.0
461
Tumor
0.0
823
Tumor
0.0
364
Normal
0.0
328
Normal
0.0
636
Normal
0.0
716
Normal
0.0
444
Normal
0.0
481
Tumor
0.0
213
Tumor
0.0
341
Tumor
0.0
357
Tumor
0.0
536
Normal
-0.1
384
Normal
-0.1
615
Tumor
-0.1
124
Normal
-0.1
513
Tumor
-0.1
224
Normal
-0.1
1015
Tumor
-0.1
926
Normal
-0.1
663
Tumor
-0.1
462
Normal
-0.1
956
Normal
-0.1
366
Normal
-0.1
376
Normal
-0.1
113
Tumor
-0.1
696
Normal
-0.1
368
Normal
-0.1
1026
Normal
-0.1
524
Normal
-0.1
1032
Normal
-0.1
125
Tumor
-0.1
616
Normal
-0.1
745
Tumor
-0.1
1042
Normal
-0.1
1046
Normal
-0.1
742
Normal
-0.1
851
Tumor
-0.1
756
Normal
-0.1
228
Normal
-0.1
642
Normal
-0.1
327
Tumor
-0.1
221
Tumor
-0.1
516
Normal
-0.1
628
Normal
-0.1
212
Normal
-0.2
171
Tumor
-0.2
778
Normal
-0.2
672
Normal
-0.2
434
Normal
-0.2
482
Normal
-0.2
375
Tumor
-0.2
218
Normal
-0.2
818
Normal
-0.2
723
Tumor
-0.2
365
Tumor
-0.2
526
Normal
-0.2
618
Normal
-0.2
195
Tumor
-0.2
738
Normal
-0.2
952
Normal
-0.2
284
Normal
-0.2
1028
Normal
-0.2
518
Normal
-0.3
852
Normal
-0.3
446
Normal
-0.3
863
Tumor
-0.3
866
Normal
-0.3
824
Normal
-0.3
286
Normal
-0.3
448
Normal
-0.3
746
Normal
-0.3
858
Normal
-0.3
648
Normal
-0.3
864
Normal
-0.3
728
Normal
-0.3
537
Tumor
-0.3
191
Tumor
-0.3
816
Normal
-0.3
1022
Normal
-0.3
874
Normal
-0.3
664
Normal
-0.3
1044
Normal
-0.3
514
Normal
-0.4
662
Normal
-0.4
671
Tumor
-0.4
666
Normal
-0.4
665
Tumor
-0.4
447
Tumor
-0.4
1016
Normal
-0.4
862
Normal
-0.4
627
Tumor
-0.4
525
Tumor
-0.4
868
Normal
-0.4
432
Normal
-0.4
474
Normal
-0.4
786
Normal
-0.4
436
Normal
-0.4
697
Tumor
-0.5
1045
Tumor
-0.5
1043
Tumor
-0.5
815
Tumor
-0.7
231
Tumor
N/A
232
Normal
N/A
911
Tumor
N/A
912
Normal
N/A
913
Tumor
N/A
914
Normal
N/A
131
Tumor
N/A
132
Normal
N/A
135
Tumor
N/A
136
Normal
N/A
257
Tumor
N/A
137
Tumor
N/A
258
Normal
N/A
138
Normal
N/A
261
Tumor
N/A
141
Tumor
N/A
262
Normal
N/A
142
Normal
N/A
145
Tumor
N/A
146
Normal
N/A
267
Tumor
N/A
268
Normal
N/A
271
Tumor
N/A
272
Normal
N/A
277
Tumor
N/A
278
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
877
Tumor
N/A
878
Normal
N/A
881
Tumor
N/A
882
Normal
N/A
883
Tumor
N/A
884
Normal
N/A
413
Tumor
N/A
414
Normal
N/A
421
Tumor
N/A
422
Normal
N/A
423
Tumor
N/A
424
Normal
N/A
425
Tumor
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
311
Tumor
N/A
312
Normal
N/A
313
Tumor
N/A
314
Normal
N/A
557
Tumor
N/A
558
Normal
N/A
563
Tumor
N/A
564
Normal
N/A
567
Tumor
N/A
568
Normal
N/A
571
Tumor
N/A
572
Normal
N/A
331
Tumor
N/A
573
Tumor
N/A
332
Normal
N/A
574
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.