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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
8.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
6.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
3.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
3.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
3.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
2.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
2.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
2.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
2.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
2.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
2.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
1.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
1.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
1.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
1.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
1.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
1.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
1.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
1.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
1.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
1.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
1.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
1.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
1.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
1.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
1.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
1.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
1.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
1.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
1.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
1.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
1.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
1.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
1.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
1.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
1.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
1.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
1.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
1.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
1.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
1.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
1.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
0.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
0.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
0.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
0.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
0.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
0.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
0.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
0.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
0.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
0.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
0.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
0.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
0.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
0.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
0.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
0.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
0.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
0.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
0.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
0.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
0.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
0.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
0.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
0.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
0.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
0.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
0.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
0.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
0.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
0.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
0.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
0.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
0.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
0.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
0.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
0.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
0.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
0.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
0.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
0.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
0.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
0.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
0.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
0.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
0.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
0.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
0.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
0.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
0.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
0.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
0.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
0.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
0.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
0.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
0.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
0.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
0.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
0.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
0.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
0.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
0.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
0.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
0.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
0.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
0.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
0.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
0.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
0.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
0.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
0.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
0.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
0.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
0.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
0.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
0.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
0.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.7
Number of samples
231
Samples
Sample
Description
TPM
DO23530
0 years, male, NA, stage:4, dead, 180 days
6.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
4.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
4.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
4.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
3.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
3.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
3.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
3.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
3.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
3.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
3.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
2.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
2.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
2.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
2.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
2.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
1.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
1.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
1.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
1.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
1.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
1.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
1.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
1.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
1.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
1.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
1.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
1.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
1.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
1.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
1.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
1.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
1.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
1.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
1.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
1.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
1.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
1.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
1.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
1.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
1.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
1.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
1.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
1.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
1.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
0.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
0.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
0.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
0.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
0.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
0.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
0.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
0.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
0.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
0.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
0.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
0.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
0.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
0.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
0.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
0.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
0.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
0.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
0.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
0.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
0.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
0.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
0.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
0.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
0.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
0.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
0.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
0.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
0.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
0.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
0.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
0.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
0.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
0.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
0.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
0.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
0.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
0.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
0.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
0.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
0.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
0.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
0.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
0.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
0.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
0.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
0.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
0.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
0.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
0.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
0.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
0.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
0.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
0.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
0.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
0.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
0.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
0.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
0.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
0.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
0.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
0.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
0.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
0.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
0.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
0.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
0.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
0.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
0.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
0.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
0.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
0.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
0.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
0.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
0.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
0.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
0.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
0.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
0.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
0.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
0.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
0.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
0.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
0.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
0.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
0.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
0.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
0.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
0.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
0.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
0.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
0.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
0.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
0.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
0.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
0.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
0.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
0.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
0.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
0.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
0.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
0.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
0.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
0.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
0.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
0.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
0.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
0.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
0.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
0.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
865
Tumor
3.3
462
Normal
1.6
285
Tumor
1.4
283
Tumor
1.2
482
Normal
1.2
472
Normal
1.1
478
Normal
1.1
536
Normal
1.0
474
Normal
1.0
311
Tumor
0.9
955
Tumor
0.9
211
Tumor
0.9
481
Tumor
0.8
331
Tumor
0.8
535
Tumor
0.8
444
Normal
0.7
447
Tumor
0.7
223
Tumor
0.7
1044
Normal
0.6
817
Tumor
0.6
823
Tumor
0.5
1045
Tumor
0.5
297
Tumor
0.5
944
Normal
0.5
857
Tumor
0.5
697
Tumor
0.4
132
Normal
0.4
943
Tumor
0.4
1046
Normal
0.4
434
Normal
0.4
312
Normal
0.4
852
Normal
0.4
222
Normal
0.4
868
Normal
0.4
884
Normal
0.4
277
Tumor
0.4
864
Normal
0.4
866
Normal
0.4
196
Normal
0.4
698
Normal
0.4
818
Normal
0.4
278
Normal
0.3
448
Normal
0.3
877
Tumor
0.3
863
Tumor
0.3
862
Normal
0.3
446
Normal
0.3
191
Tumor
0.3
332
Normal
0.3
363
Tumor
0.3
477
Tumor
0.3
432
Normal
0.3
815
Tumor
0.3
136
Normal
0.2
192
Normal
0.2
874
Normal
0.2
851
Tumor
0.2
461
Tumor
0.2
914
Normal
0.2
912
Normal
0.2
138
Normal
0.2
145
Tumor
0.2
881
Tumor
0.2
214
Normal
0.2
314
Normal
0.2
824
Normal
0.1
816
Normal
0.1
938
Normal
0.1
433
Tumor
0.1
224
Normal
0.1
142
Normal
0.1
858
Normal
0.1
882
Normal
0.1
298
Normal
0.1
355
Tumor
0.0
195
Tumor
0.0
212
Normal
0.0
873
Tumor
0.0
227
Tumor
-0.1
284
Normal
-0.1
146
Normal
-0.1
218
Normal
-0.1
956
Normal
-0.1
415
Tumor
-0.1
471
Tumor
-0.1
473
Tumor
-0.1
213
Tumor
-0.1
528
Normal
-0.1
313
Tumor
-0.2
286
Normal
-0.2
436
Normal
-0.2
878
Normal
-0.2
883
Tumor
-0.2
443
Tumor
-0.2
954
Normal
-0.2
431
Tumor
-0.2
356
Normal
-0.2
217
Tumor
-0.2
228
Normal
-0.2
435
Tumor
-0.2
416
Normal
-0.2
913
Tumor
-0.3
412
Normal
-0.3
328
Normal
-0.3
546
Normal
-0.3
1043
Tumor
-0.3
937
Tumor
-0.3
953
Tumor
-0.3
545
Tumor
-0.3
861
Tumor
-0.3
364
Normal
-0.4
221
Tumor
-0.4
534
Normal
-0.5
135
Tumor
-0.5
445
Tumor
-0.5
327
Tumor
-0.5
538
Normal
-0.5
137
Tumor
-0.5
951
Tumor
-0.6
554
Normal
-0.6
952
Normal
-0.6
141
Tumor
-0.6
131
Tumor
-0.7
911
Tumor
-0.8
527
Tumor
-0.9
411
Tumor
-1.0
537
Tumor
-1.1
867
Tumor
-1.2
553
Tumor
-1.2
533
Tumor
-1.6
351
Tumor
N/A
231
Tumor
N/A
352
Normal
N/A
111
Normal
N/A
232
Normal
N/A
353
Tumor
N/A
112
Tumor
N/A
354
Normal
N/A
113
Tumor
N/A
114
Normal
N/A
357
Tumor
N/A
358
Normal
N/A
915
Tumor
N/A
916
Normal
N/A
917
Tumor
N/A
918
Normal
N/A
361
Tumor
N/A
362
Normal
N/A
483
Tumor
N/A
484
Normal
N/A
123
Tumor
N/A
365
Tumor
N/A
124
Normal
N/A
366
Normal
N/A
487
Tumor
N/A
125
Tumor
N/A
367
Tumor
N/A
488
Normal
N/A
126
Normal
N/A
368
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
921
Tumor
N/A
922
Normal
N/A
923
Tumor
N/A
924
Normal
N/A
925
Tumor
N/A
926
Normal
N/A
491
Tumor
N/A
492
Normal
N/A
493
Tumor
N/A
494
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
497
Tumor
N/A
498
Normal
N/A
257
Tumor
N/A
258
Normal
N/A
813
Tumor
N/A
814
Normal
N/A
261
Tumor
N/A
262
Normal
N/A
383
Tumor
N/A
384
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
387
Tumor
N/A
267
Tumor
N/A
388
Normal
N/A
147
Tumor
N/A
268
Normal
N/A
148
Normal
N/A
1022
Normal
N/A
1021
Tumor
N/A
391
Tumor
N/A
271
Tumor
N/A
392
Normal
N/A
272
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
1016
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
1013
Tumor
N/A
713
Tumor
N/A
714
Normal
N/A
715
Tumor
N/A
957
Tumor
N/A
716
Normal
N/A
958
Normal
N/A
1032
Normal
N/A
1031
Tumor
N/A
161
Tumor
N/A
162
Normal
N/A
1028
Normal
N/A
1027
Tumor
N/A
1026
Normal
N/A
1025
Tumor
N/A
721
Tumor
N/A
963
Tumor
N/A
722
Normal
N/A
964
Normal
N/A
723
Tumor
N/A
965
Tumor
N/A
724
Normal
N/A
966
Normal
N/A
967
Tumor
N/A
968
Normal
N/A
727
Tumor
N/A
728
Normal
N/A
1042
Normal
N/A
1041
Tumor
N/A
171
Tumor
N/A
172
Normal
N/A
975
Tumor
N/A
976
Normal
N/A
977
Tumor
N/A
615
Tumor
N/A
978
Normal
N/A
616
Normal
N/A
737
Tumor
N/A
617
Tumor
N/A
738
Normal
N/A
618
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
981
Tumor
N/A
982
Normal
N/A
741
Tumor
N/A
983
Tumor
N/A
742
Normal
N/A
984
Normal
N/A
743
Tumor
N/A
744
Normal
N/A
745
Tumor
N/A
746
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
513
Tumor
N/A
755
Tumor
N/A
514
Normal
N/A
635
Tumor
N/A
756
Normal
N/A
515
Tumor
N/A
636
Normal
N/A
516
Normal
N/A
517
Tumor
N/A
518
Normal
N/A
641
Tumor
N/A
642
Normal
N/A
523
Tumor
N/A
524
Normal
N/A
525
Tumor
N/A
526
Normal
N/A
647
Tumor
N/A
648
Normal
N/A
413
Tumor
N/A
414
Normal
N/A
777
Tumor
N/A
778
Normal
N/A
661
Tumor
N/A
662
Normal
N/A
421
Tumor
N/A
663
Tumor
N/A
422
Normal
N/A
664
Normal
N/A
785
Tumor
N/A
423
Tumor
N/A
665
Tumor
N/A
786
Normal
N/A
424
Normal
N/A
666
Normal
N/A
425
Tumor
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
671
Tumor
N/A
672
Normal
N/A
557
Tumor
N/A
558
Normal
N/A
563
Tumor
N/A
564
Normal
N/A
685
Tumor
N/A
686
Normal
N/A
567
Tumor
N/A
568
Normal
N/A
571
Tumor
N/A
451
Tumor
N/A
572
Normal
N/A
452
Normal
N/A
573
Tumor
N/A
574
Normal
N/A
695
Tumor
N/A
696
Normal
N/A
455
Tumor
N/A
456
Normal
N/A
341
Tumor
N/A
342
Normal
N/A
463
Tumor
N/A
343
Tumor
N/A
464
Normal
N/A
344
Normal
N/A
465
Tumor
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
