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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MCFD2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
41.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
175.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
150.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
128.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
125.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
123.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
110.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
109.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
108.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
106.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
106.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
96.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
93.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
93.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
92.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
92.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
91.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
91.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
88.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
88.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
86.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
84.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
80.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
80.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
79.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
78.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
78.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
77.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
76.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
75.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
75.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
75.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
73.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
73.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
73.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
71.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
71.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
71.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
70.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
70.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
69.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
68.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
68.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
68.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
68.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
67.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
67.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
67.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
65.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
65.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
64.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
64.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
64.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
64.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
64.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
64.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
62.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
60.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
60.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
60.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
60.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
60.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
59.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
59.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
59.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
59.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
59.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
58.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
58.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
58.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
58.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
58.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
57.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
57.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
56.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
56.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
54.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
54.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
54.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
54.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
53.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
53.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
53.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
52.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
52.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
52.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
52.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
51.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
51.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
51.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
51.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
51.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
51.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
51.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
50.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
50.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
50.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
49.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
49.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
49.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
49.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
49.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
48.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
48.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
48.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
47.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
47.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
47.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
47.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
47.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
47.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
47.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
47.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
46.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
46.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
46.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
46.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
46.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
46.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
46.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
46.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
45.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
45.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
45.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
45.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
45.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
44.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
44.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
44.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
44.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
44.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
43.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
43.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
43.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
43.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
43.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
43.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
43.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
43.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
43.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
43.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
43.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
42.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
42.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
42.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
42.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
42.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
42.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
42.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
41.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
41.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
41.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
40.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
40.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
40.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
39.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
39.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
39.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
39.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
39.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
39.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
39.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
38.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
38.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
38.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
38.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
38.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
37.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
37.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
37.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
37.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
37.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
37.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
37.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
36.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
36.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
36.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
36.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
36.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
36.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
36.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
36.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
36.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
36.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
36.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
36.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
35.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
35.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
35.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
35.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
35.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
34.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
34.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
34.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
34.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
34.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
34.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
34.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
34.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
33.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
33.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
33.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
33.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
33.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
33.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
33.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
33.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
33.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
33.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
33.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
33.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
33.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
33.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
33.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
33.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
33.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
32.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
32.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
32.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
32.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
31.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
31.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
31.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
31.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
31.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
31.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
31.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
31.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
31.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
31.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
31.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
31.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
30.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
30.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
30.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
30.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
30.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
30.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
30.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
30.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
30.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
30.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
30.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
29.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
29.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
29.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
29.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
29.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
29.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
29.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
29.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
29.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
28.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
27.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
27.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
27.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
27.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
27.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
27.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
27.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
27.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
26.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
26.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
26.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
26.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
26.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
26.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
26.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
26.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
25.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
25.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
25.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
25.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
25.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
25.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
25.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
24.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
24.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
24.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
24.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
24.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
24.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
24.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
23.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
23.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
23.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
23.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
23.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
23.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
22.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
22.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
22.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
22.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
22.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
22.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
22.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
22.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
21.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
21.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
21.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
21.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
21.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
21.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
20.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
20.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
20.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
20.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
20.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
20.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
19.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
19.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
19.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
19.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
19.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
19.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
18.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
18.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
18.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
18.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
18.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
18.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
18.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
18.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
18.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
18.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
18.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
18.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
17.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
17.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
17.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
17.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
17.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
16.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
16.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
16.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
15.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
15.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
15.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
15.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
14.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
14.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
14.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
14.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
13.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
13.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
13.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
13.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
13.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
12.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
12.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
12.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
12.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
12.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
11.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
11.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
11.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
11.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
10.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
10.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
9.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
9.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
7.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MCFD2 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
43.8
Number of samples
231
Samples
Sample
Description
TPM
DO45237
0 years, male, NA, stage:2, alive, 900 days
185.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
126.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
110.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
105.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
97.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
94.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
92.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
90.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
86.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
86.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
85.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
85.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
84.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
83.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
81.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
79.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
76.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
76.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
74.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
74.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
72.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
71.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
70.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
70.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
69.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
69.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
69.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
69.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
67.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
64.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
64.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
63.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
63.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
62.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
62.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
60.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
60.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
59.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
59.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
59.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
59.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
58.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
58.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
57.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
56.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
56.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
56.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
56.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
55.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
55.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
55.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
54.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
54.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
54.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
53.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
53.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
53.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
53.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
53.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
53.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
53.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
53.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
52.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
52.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
52.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
52.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
52.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
51.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
51.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
51.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
51.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
50.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
50.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
50.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
49.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
49.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
49.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
48.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
48.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
48.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
48.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
47.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
46.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
46.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
46.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
45.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
45.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
45.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
45.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
44.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
44.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
44.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
44.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
44.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
44.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
43.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
43.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
43.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
43.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
43.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
43.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
42.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
42.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
42.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
42.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
42.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
42.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
42.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
42.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
41.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
40.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
40.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
40.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
40.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
40.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
40.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
39.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
39.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
39.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
39.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
39.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
39.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
39.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
39.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
39.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
38.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
38.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
38.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
38.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
37.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
37.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
37.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
36.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
36.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
36.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
35.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
35.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
35.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
35.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
35.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
35.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
35.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
34.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
34.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
34.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
33.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
33.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
33.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
33.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
33.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
33.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
33.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
33.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
32.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
32.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
32.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
32.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
32.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
31.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
31.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
31.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
31.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
30.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
30.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
30.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
30.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
30.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
30.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
30.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
29.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
29.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
29.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
29.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
29.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
29.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
29.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
29.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
28.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
28.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
28.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
28.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
27.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
27.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
27.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
27.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
27.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
27.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
26.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
26.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
25.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
25.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
25.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
25.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
25.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
25.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
25.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
24.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
24.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
24.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
22.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
22.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
22.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
22.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
22.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
21.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
20.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
20.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
20.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
20.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
20.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
20.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
19.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
18.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
18.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
18.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
18.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
17.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
17.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
17.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
17.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
16.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
16.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
16.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
15.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
15.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
14.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
14.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
14.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
13.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
13.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
13.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
922
Normal
1.1
481
Tumor
1.1
698
Normal
1.1
723
Tumor
0.9
924
Normal
0.9
636
Normal
0.8
1014
Normal
0.8
648
Normal
0.8
984
Normal
0.8
786
Normal
0.8
426
Normal
0.8
568
Normal
0.8
342
Normal
0.7
742
Normal
0.7
526
Normal
0.7
1046
Normal
0.7
484
Normal
0.7
546
Normal
0.7
727
Tumor
0.7
462
Normal
0.7
482
Normal
0.7
488
Normal
0.7
452
Normal
0.7
534
Normal
0.7
968
Normal
0.7
514
Normal
0.7
722
Normal
0.7
664
Normal
0.6
862
Normal
0.6
1032
Normal
0.6
744
Normal
0.6
944
Normal
0.6
926
Normal
0.6
392
Normal
0.6
915
Tumor
0.6
696
Normal
0.6
918
Normal
0.6
446
Normal
0.6
572
Normal
0.6
356
Normal
0.6
388
Normal
0.6
376
Normal
0.6
218
Normal
0.6
554
Normal
0.6
314
Normal
0.6
756
Normal
0.6
222
Normal
0.6
436
Normal
0.6
412
Normal
0.6
738
Normal
0.6
714
Normal
0.6
466
Normal
0.6
114
Normal
0.6
474
Normal
0.6
1044
Normal
0.6
666
Normal
0.5
396
Normal
0.5
741
Tumor
0.5
958
Normal
0.5
816
Normal
0.5
212
Normal
0.5
494
Normal
0.5
778
Normal
0.5
964
Normal
0.5
642
Normal
0.5
564
Normal
0.5
716
Normal
0.5
616
Normal
0.5
341
Tumor
0.5
518
Normal
0.5
344
Normal
0.5
618
Normal
0.5
1016
Normal
0.5
912
Normal
0.5
982
Normal
0.5
394
Normal
0.5
472
Normal
0.5
978
Normal
0.5
258
Normal
0.5
662
Normal
0.5
286
Normal
0.5
448
Normal
0.5
628
Normal
0.4
132
Normal
0.4
878
Normal
0.4
148
Normal
0.4
516
Normal
0.4
298
Normal
0.4
858
Normal
0.4
332
Normal
0.4
278
Normal
0.4
721
Tumor
0.4
746
Normal
0.4
232
Normal
0.4
124
Normal
0.4
818
Normal
0.4
686
Normal
0.4
368
Normal
0.4
966
Normal
0.4
1026
Normal
0.4
414
Normal
0.4
728
Normal
0.4
528
Normal
0.4
824
Normal
0.4
938
Normal
0.4
1015
Tumor
0.4
424
Normal
0.4
672
Normal
0.4
1022
Normal
0.4
128
Normal
0.4
868
Normal
0.4
911
Tumor
0.4
364
Normal
0.4
328
Normal
0.4
196
Normal
0.4
914
Normal
0.4
432
Normal
0.4
171
Tumor
0.4
162
Normal
0.4
354
Normal
0.4
1025
Tumor
0.4
916
Normal
0.3
468
Normal
0.3
923
Tumor
0.3
111
Normal
0.3
284
Normal
0.3
428
Normal
0.3
955
Tumor
0.3
574
Normal
0.3
456
Normal
0.3
434
Normal
0.3
172
Normal
0.3
228
Normal
0.3
976
Normal
0.3
464
Normal
0.3
954
Normal
0.3
558
Normal
0.3
353
Tumor
0.3
142
Normal
0.3
981
Tumor
0.3
857
Tumor
0.3
262
Normal
0.3
451
Tumor
0.3
665
Tumor
0.3
571
Tumor
0.3
864
Normal
0.3
352
Normal
0.3
524
Normal
0.2
743
Tumor
0.2
433
Tumor
0.2
498
Normal
0.2
1028
Normal
0.2
358
Normal
0.2
492
Normal
0.2
422
Normal
0.2
527
Tumor
0.2
214
Normal
0.2
882
Normal
0.2
366
Normal
0.2
536
Normal
0.2
363
Tumor
0.2
473
Tumor
0.2
755
Tumor
0.2
866
Normal
0.2
186
Normal
0.2
867
Tumor
0.2
884
Normal
0.2
261
Tumor
0.2
487
Tumor
0.2
223
Tumor
0.1
127
Tumor
0.1
852
Normal
0.1
533
Tumor
0.1
538
Normal
0.1
713
Tumor
0.1
386
Normal
0.1
937
Tumor
0.1
272
Normal
0.1
416
Normal
0.1
312
Normal
0.1
413
Tumor
0.1
391
Tumor
0.1
138
Normal
0.1
467
Tumor
0.1
362
Normal
0.1
956
Normal
0.1
1043
Tumor
0.1
384
Normal
0.1
517
Tumor
0.1
967
Tumor
0.1
217
Tumor
0.1
257
Tumor
0.1
1042
Normal
0.1
647
Tumor
0.1
126
Normal
0.1
553
Tumor
0.1
231
Tumor
0.1
952
Normal
0.0
145
Tumor
0.0
136
Normal
0.0
327
Tumor
0.0
745
Tumor
0.0
113
Tumor
0.0
195
Tumor
0.0
724
Normal
0.0
823
Tumor
0.0
227
Tumor
0.0
444
Normal
0.0
813
Tumor
0.0
137
Tumor
0.0
925
Tumor
0.0
285
Tumor
0.0
513
Tumor
0.0
977
Tumor
0.0
913
Tumor
0.0
123
Tumor
0.0
525
Tumor
0.0
415
Tumor
0.0
814
Normal
0.0
387
Tumor
-0.1
685
Tumor
-0.1
963
Tumor
-0.1
355
Tumor
-0.1
465
Tumor
-0.1
478
Normal
-0.1
965
Tumor
-0.1
873
Tumor
-0.1
191
Tumor
-0.1
695
Tumor
-0.1
161
Tumor
-0.1
268
Normal
-0.1
785
Tumor
-0.1
523
Tumor
-0.1
423
Tumor
-0.1
874
Normal
-0.1
663
Tumor
-0.1
697
Tumor
-0.1
615
Tumor
-0.1
497
Tumor
-0.1
125
Tumor
-0.1
357
Tumor
-0.1
477
Tumor
-0.2
393
Tumor
-0.2
187
Tumor
-0.2
224
Normal
-0.2
146
Normal
-0.2
445
Tumor
-0.2
188
Normal
-0.2
383
Tumor
-0.2
435
Tumor
-0.2
537
Tumor
-0.2
957
Tumor
-0.2
493
Tumor
-0.2
851
Tumor
-0.2
535
Tumor
-0.2
861
Tumor
-0.2
427
Tumor
-0.2
1041
Tumor
-0.2
367
Tumor
-0.2
737
Tumor
-0.2
567
Tumor
-0.2
573
Tumor
-0.2
635
Tumor
-0.2
917
Tumor
-0.2
921
Tumor
-0.3
627
Tumor
-0.3
975
Tumor
-0.3
617
Tumor
-0.3
943
Tumor
-0.3
1045
Tumor
-0.3
351
Tumor
-0.3
557
Tumor
-0.3
443
Tumor
-0.3
331
Tumor
-0.3
563
Tumor
-0.3
141
Tumor
-0.3
147
Tumor
-0.3
361
Tumor
-0.3
461
Tumor
-0.4
483
Tumor
-0.4
1027
Tumor
-0.4
661
Tumor
-0.4
715
Tumor
-0.4
545
Tumor
-0.4
271
Tumor
-0.4
311
Tumor
-0.4
267
Tumor
-0.4
463
Tumor
-0.4
953
Tumor
-0.4
192
Normal
-0.4
1031
Tumor
-0.4
185
Tumor
-0.4
515
Tumor
-0.4
313
Tumor
-0.4
425
Tumor
-0.4
1021
Tumor
-0.5
447
Tumor
-0.5
365
Tumor
-0.5
471
Tumor
-0.5
343
Tumor
-0.5
491
Tumor
-0.5
221
Tumor
-0.5
983
Tumor
-0.5
777
Tumor
-0.5
131
Tumor
-0.5
431
Tumor
-0.6
135
Tumor
-0.6
297
Tumor
-0.6
277
Tumor
-0.6
421
Tumor
-0.6
883
Tumor
-0.6
112
Tumor
-0.6
641
Tumor
-0.6
395
Tumor
-0.6
213
Tumor
-0.7
411
Tumor
-0.7
1013
Tumor
-0.7
671
Tumor
-0.7
951
Tumor
-0.7
877
Tumor
-0.7
455
Tumor
-0.8
881
Tumor
-0.9
385
Tumor
-0.9
865
Tumor
-0.9
283
Tumor
-0.9
211
Tumor
-1.0
863
Tumor
-1.0
817
Tumor
-1.1
815
Tumor
-1.1
375
Tumor
-1.3
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
