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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MTURN is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
2.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
13.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
11.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
10.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
8.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
8.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
8.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
8.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
8.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
7.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
7.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
6.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
6.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
6.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
6.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
6.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
6.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
5.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
5.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
5.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
5.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
5.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
5.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
4.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
4.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
4.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
4.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
4.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
4.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
4.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
4.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
4.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
4.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
4.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
4.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
3.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
3.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
3.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
3.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
3.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
3.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
3.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
3.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
3.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
3.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
3.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
3.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
3.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
3.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
3.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
2.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
2.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
2.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
2.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
2.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
2.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
2.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
2.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
2.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
2.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
2.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
2.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
2.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
2.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
2.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
2.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
2.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
2.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
2.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
2.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
2.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
2.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
2.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
2.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
2.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
2.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
2.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
2.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
2.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
2.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
2.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
2.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
2.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
2.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
2.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
2.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
2.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
2.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
2.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
2.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
2.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
2.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
2.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
2.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
2.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
2.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
2.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
2.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
2.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
2.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
2.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
2.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
2.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
2.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
2.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
1.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
1.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
1.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
1.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
1.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
1.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
1.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
1.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
1.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
1.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
1.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
1.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
1.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
1.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
1.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
1.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
1.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
1.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
1.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
1.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
1.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
1.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
1.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
1.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
1.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
1.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
1.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
1.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
1.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
1.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
1.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
1.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
1.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
1.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
1.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
1.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
1.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
1.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
1.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
1.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
1.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
1.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
1.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
1.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
1.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
1.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
1.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
1.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
1.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
1.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
1.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
1.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
1.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
1.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
1.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
1.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
1.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
1.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
1.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
1.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
1.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
1.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
1.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
1.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
1.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
1.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
1.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
1.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
1.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
1.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
1.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
1.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
1.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
1.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
1.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
1.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
1.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
1.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
1.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
1.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
1.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
1.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
1.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
1.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
1.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
1.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
1.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
1.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
1.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
1.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
1.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
1.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
1.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
1.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
1.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
1.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
1.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
1.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
1.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
1.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
1.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
1.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
1.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
1.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
1.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
1.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
1.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
1.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
1.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
1.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
1.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
1.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
1.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
1.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
1.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
1.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
1.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
0.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
0.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
0.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
0.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
0.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
0.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
0.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
0.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
0.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
0.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
0.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
911
Tumor
1.4
915
Tumor
1.3
257
Tumor
1.2
723
Tumor
1.1
877
Tumor
1.0
353
Tumor
1.0
913
Tumor
0.9
728
Normal
0.8
672
Normal
0.8
491
Tumor
0.8
816
Normal
0.8
311
Tumor
0.8
924
Normal
0.8
192
Normal
0.7
953
Tumor
0.7
137
Tumor
0.7
1013
Tumor
0.6
818
Normal
0.6
525
Tumor
0.6
426
Normal
0.6
298
Normal
0.6
738
Normal
0.6
852
Normal
0.5
914
Normal
0.5
744
Normal
0.5
478
Normal
0.5
327
Tumor
0.5
351
Tumor
0.5
863
Tumor
0.5
742
Normal
0.5
777
Tumor
0.5
546
Normal
0.5
952
Normal
0.5
916
Normal
0.5
778
Normal
0.5
268
Normal
0.5
354
Normal
0.5
342
Normal
0.5
741
Tumor
0.5
662
Normal
0.5
343
Tumor
0.5
328
Normal
0.4
416
Normal
0.4
737
Tumor
0.4
527
Tumor
0.4
261
Tumor
0.4
364
Normal
0.4
434
Normal
0.4
482
Normal
0.4
472
Normal
0.4
1016
Normal
0.4
1015
Tumor
0.4
545
Tumor
0.4
922
Normal
0.4
356
Normal
0.4
383
Tumor
0.4
867
Tumor
0.4
444
Normal
0.4
146
Normal
0.4
745
Tumor
0.4
1014
Normal
0.4
498
Normal
0.4
142
Normal
0.4
352
Normal
0.4
355
Tumor
0.3
344
Normal
0.3
786
Normal
0.3
554
Normal
0.3
785
Tumor
0.3
222
Normal
0.3
574
Normal
0.3
647
Tumor
0.3
214
Normal
0.3
332
Normal
0.3
722
Normal
0.3
918
Normal
0.3
686
Normal
0.3
218
Normal
0.3
538
Normal
0.3
756
Normal
0.3
878
Normal
0.3
956
Normal
0.3
968
Normal
0.3
958
Normal
0.3
716
Normal
0.3
481
Tumor
0.3
415
Tumor
0.3
721
Tumor
0.3
196
Normal
0.2
881
Tumor
0.2
267
Tumor
0.2
384
Normal
0.2
671
Tumor
0.2
664
Normal
0.2
312
Normal
0.2
523
Tumor
0.2
663
Tumor
0.2
923
Tumor
0.2
483
Tumor
0.2
232
Normal
0.2
714
Normal
0.2
572
Normal
0.2
665
Tumor
0.2
982
Normal
0.2
851
Tumor
0.2
412
Normal
0.2
857
Tumor
0.2
882
Normal
0.2
984
Normal
0.2
516
Normal
0.2
526
Normal
0.2
278
Normal
0.2
473
Tumor
0.2
227
Tumor
0.2
976
Normal
0.2
666
Normal
0.2
978
Normal
0.2
573
Tumor
0.2
964
Normal
0.2
868
Normal
0.2
314
Normal
0.2
755
Tumor
0.2
138
Normal
0.1
858
Normal
0.1
824
Normal
0.1
474
Normal
0.1
414
Normal
0.1
917
Tumor
0.1
954
Normal
0.1
131
Tumor
0.1
363
Tumor
0.1
488
Normal
0.1
262
Normal
0.1
861
Tumor
0.1
217
Tumor
0.1
494
Normal
0.1
864
Normal
0.1
126
Normal
0.1
492
Normal
0.1
815
Tumor
0.1
553
Tumor
0.1
362
Normal
0.1
224
Normal
0.1
926
Normal
0.1
862
Normal
0.1
957
Tumor
0.1
125
Tumor
0.1
866
Normal
0.1
558
Normal
0.1
422
Normal
0.1
966
Normal
0.1
272
Normal
0.1
524
Normal
0.1
424
Normal
0.0
823
Tumor
0.0
981
Tumor
0.0
425
Tumor
0.0
977
Tumor
0.0
411
Tumor
0.0
884
Normal
0.0
428
Normal
0.0
484
Normal
0.0
136
Normal
0.0
132
Normal
0.0
487
Tumor
0.0
297
Tumor
0.0
696
Normal
0.0
534
Normal
0.0
955
Tumor
0.0
283
Tumor
0.0
513
Tumor
0.0
432
Normal
0.0
462
Normal
0.0
358
Normal
0.0
874
Normal
-0.1
258
Normal
-0.1
461
Tumor
-0.1
568
Normal
-0.1
124
Normal
-0.1
446
Normal
-0.1
145
Tumor
-0.1
427
Tumor
-0.1
366
Normal
-0.1
661
Tumor
-0.1
873
Tumor
-0.1
648
Normal
-0.1
195
Tumor
-0.1
746
Normal
-0.1
271
Tumor
-0.1
967
Tumor
-0.1
944
Normal
-0.1
211
Tumor
-0.1
963
Tumor
-0.2
191
Tumor
-0.2
518
Normal
-0.2
938
Normal
-0.2
471
Tumor
-0.2
564
Normal
-0.2
912
Normal
-0.2
443
Tumor
-0.2
111
Normal
-0.2
533
Tumor
-0.2
517
Tumor
-0.2
433
Tumor
-0.2
713
Tumor
-0.2
284
Normal
-0.2
943
Tumor
-0.2
228
Normal
-0.2
817
Tumor
-0.2
128
Normal
-0.2
141
Tumor
-0.2
477
Tumor
-0.2
983
Tumor
-0.2
515
Tumor
-0.3
563
Tumor
-0.3
286
Normal
-0.3
925
Tumor
-0.3
695
Tumor
-0.3
724
Normal
-0.3
213
Tumor
-0.3
528
Normal
-0.3
883
Tumor
-0.3
113
Tumor
-0.3
514
Normal
-0.3
493
Tumor
-0.3
423
Tumor
-0.3
114
Normal
-0.3
341
Tumor
-0.3
865
Tumor
-0.3
814
Normal
-0.3
231
Tumor
-0.4
375
Tumor
-0.4
537
Tumor
-0.4
435
Tumor
-0.4
223
Tumor
-0.4
357
Tumor
-0.4
497
Tumor
-0.4
685
Tumor
-0.4
331
Tumor
-0.4
965
Tumor
-0.4
431
Tumor
-0.4
376
Normal
-0.4
313
Tumor
-0.4
567
Tumor
-0.5
436
Normal
-0.5
365
Tumor
-0.5
813
Tumor
-0.5
212
Normal
-0.5
975
Tumor
-0.5
421
Tumor
-0.5
445
Tumor
-0.5
727
Tumor
-0.6
361
Tumor
-0.6
951
Tumor
-0.6
571
Tumor
-0.6
135
Tumor
-0.7
921
Tumor
-0.7
367
Tumor
-0.7
715
Tumor
-0.7
937
Tumor
-0.7
127
Tumor
-0.7
221
Tumor
-0.8
112
Tumor
-0.9
557
Tumor
-0.9
743
Tumor
-1.0
123
Tumor
-1.1
285
Tumor
-1.1
277
Tumor
-1.1
413
Tumor
-1.2
368
Normal
-1.4
385
Tumor
N/A
386
Normal
N/A
387
Tumor
N/A
388
Normal
N/A
147
Tumor
N/A
148
Normal
N/A
1022
Normal
N/A
1021
Tumor
N/A
391
Tumor
N/A
392
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
1032
Normal
N/A
1031
Tumor
N/A
161
Tumor
N/A
162
Normal
N/A
1028
Normal
N/A
1027
Tumor
N/A
1026
Normal
N/A
1025
Tumor
N/A
1044
Normal
N/A
1043
Tumor
N/A
1042
Normal
N/A
1041
Tumor
N/A
171
Tumor
N/A
172
Normal
N/A
615
Tumor
N/A
616
Normal
N/A
617
Tumor
N/A
618
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
1046
Normal
N/A
1045
Tumor
N/A
627
Tumor
N/A
628
Normal
N/A
635
Tumor
N/A
636
Normal
N/A
641
Tumor
N/A
642
Normal
N/A
535
Tumor
N/A
536
Normal
N/A
447
Tumor
N/A
448
Normal
N/A
451
Tumor
N/A
452
Normal
N/A
455
Tumor
N/A
697
Tumor
N/A
456
Normal
N/A
698
Normal
N/A
463
Tumor
N/A
464
Normal
N/A
465
Tumor
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
