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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TIGD2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
23.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
23.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
23.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
23.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
22.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
22.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
22.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
20.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
19.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
18.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
18.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
18.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
18.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
17.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
17.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
17.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
17.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
16.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
16.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
15.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
15.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
14.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
14.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
14.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
14.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
14.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
14.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
14.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
13.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
13.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
13.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
13.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
13.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
13.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
13.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
13.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
12.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
12.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
12.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
12.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
12.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
12.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
12.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
12.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
12.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
12.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
12.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
12.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
12.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
12.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
11.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
11.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
11.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
11.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
11.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
11.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
11.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
11.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
11.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
11.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
11.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
10.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
10.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
10.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
10.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
10.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
10.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
10.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
10.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
10.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
10.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
10.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
10.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
10.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
10.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
10.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
10.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
10.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
10.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
10.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
9.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
9.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
9.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
9.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
9.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
9.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
9.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
9.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
9.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
8.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
8.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
8.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
8.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
8.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
8.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
8.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
8.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
8.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
8.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
8.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
8.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
8.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
7.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
7.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
7.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
7.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
7.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
7.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
7.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
7.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
7.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
7.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
7.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
7.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
7.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
7.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
7.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
7.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
7.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
7.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
7.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
7.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
7.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
7.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
6.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
6.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
6.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
6.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
6.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
6.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
6.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
6.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
6.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
6.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
6.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
6.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
6.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
6.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
5.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
5.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
5.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
5.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
5.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
5.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
5.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
5.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
5.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
5.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
5.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
5.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
5.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
5.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
5.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
5.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
5.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
5.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
5.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
5.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
4.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
4.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
4.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
4.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
4.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
4.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
4.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
4.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
4.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
4.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
4.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
4.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
4.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
4.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
4.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
4.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
4.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
4.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
4.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
4.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
4.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
4.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
4.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
3.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
3.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
3.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
3.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
3.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
3.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
3.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
3.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
3.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
3.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
3.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
3.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
3.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
3.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
3.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
3.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
3.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
3.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
3.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
3.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
3.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
3.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
2.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
2.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
2.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
2.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
2.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
2.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
2.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
2.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
2.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
2.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
2.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
2.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
2.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
2.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
2.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
2.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
2.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
2.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
2.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
2.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
2.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
2.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
2.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
1.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
1.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
1.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
1.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
1.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
1.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
1.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
1.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
1.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
1.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
1.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
1.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
1.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
1.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
1.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
1.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
1.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
1.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
1.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
1.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
1.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
1.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
1.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
1.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
1.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
1.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
1.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
1.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
1.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
1.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
0.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TIGD2 is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.3
Number of samples
231
Samples
Sample
Description
TPM
DO23518
0 years, male, NA, stage:2, alive, 1320 days
28.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
25.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
24.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
24.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
21.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
21.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
20.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
20.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
19.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
19.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
18.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
18.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
16.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
16.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
16.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
15.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
15.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
15.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
15.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
15.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
15.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
15.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
15.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
14.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
14.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
14.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
14.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
14.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
14.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
13.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
13.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
13.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
12.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
12.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
12.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
12.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
12.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
12.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
11.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
11.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
11.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
11.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
11.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
11.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
11.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
11.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
10.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
10.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
10.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
10.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
10.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
10.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
10.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
10.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
10.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
10.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
10.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
9.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
9.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
9.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
9.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
9.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
9.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
9.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
8.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
8.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
8.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
8.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
8.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
8.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
8.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
8.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
8.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
8.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
8.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
8.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
7.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
7.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
7.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
7.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
7.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
7.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
7.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
7.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
7.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
7.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
7.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
7.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
7.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
7.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
7.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
7.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
7.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
6.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
6.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
6.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
6.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
6.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
6.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
6.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
6.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
6.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
6.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
6.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
5.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
5.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
5.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
5.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
5.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
5.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
5.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
5.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
5.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
5.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
5.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
5.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
5.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
4.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
4.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
4.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
4.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
4.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
4.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
4.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
4.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
4.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
4.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
4.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
4.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
4.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
4.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
4.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
4.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
4.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
4.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
4.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
4.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
4.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
4.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
3.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
3.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
3.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
3.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
3.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
3.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
3.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
3.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
3.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
3.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
3.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
3.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
3.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
3.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
3.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
3.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
3.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
3.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
3.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
3.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
3.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
3.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
3.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
3.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
3.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
3.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
2.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
2.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
2.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
2.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
2.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
2.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
2.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
2.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
2.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
2.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
2.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
2.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
2.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
2.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
2.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
2.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
2.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
2.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
2.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
2.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
2.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
2.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
2.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
2.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
2.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
2.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
2.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
2.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
2.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
1.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
1.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
1.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
1.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
1.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
1.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
1.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
1.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
1.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
1.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
1.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
0.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
523
Tumor
1.3
917
Tumor
1.1
921
Tumor
1.1
314
Normal
1.1
271
Tumor
1.1
1013
Tumor
1.1
1014
Normal
1.0
647
Tumor
1.0
497
Tumor
1.0
332
Normal
0.9
471
Tumor
0.9
663
Tumor
0.9
277
Tumor
0.9
721
Tumor
0.9
572
Normal
0.8
913
Tumor
0.8
487
Tumor
0.8
423
Tumor
0.8
558
Normal
0.7
298
Normal
0.7
445
Tumor
0.7
714
Normal
0.7
965
Tumor
0.7
957
Tumor
0.7
882
Normal
0.7
1016
Normal
0.7
912
Normal
0.7
984
Normal
0.7
863
Tumor
0.7
864
Normal
0.7
878
Normal
0.6
862
Normal
0.6
514
Normal
0.6
982
Normal
0.6
312
Normal
0.6
866
Normal
0.6
884
Normal
0.6
278
Normal
0.6
563
Tumor
0.5
635
Tumor
0.5
557
Tumor
0.5
916
Normal
0.5
746
Normal
0.5
1015
Tumor
0.5
473
Tumor
0.5
868
Normal
0.5
923
Tumor
0.4
224
Normal
0.4
978
Normal
0.4
943
Tumor
0.4
977
Tumor
0.4
526
Normal
0.4
478
Normal
0.4
518
Normal
0.4
261
Tumor
0.4
867
Tumor
0.4
524
Normal
0.4
964
Normal
0.4
925
Tumor
0.4
534
Normal
0.4
648
Normal
0.4
911
Tumor
0.4
528
Normal
0.4
573
Tumor
0.4
431
Tumor
0.3
756
Normal
0.3
1026
Normal
0.3
777
Tumor
0.3
861
Tumor
0.3
395
Tumor
0.3
211
Tumor
0.3
571
Tumor
0.3
516
Normal
0.3
915
Tumor
0.3
554
Normal
0.3
1041
Tumor
0.3
284
Normal
0.3
484
Normal
0.3
666
Normal
0.3
425
Tumor
0.3
568
Normal
0.3
223
Tumor
0.3
924
Normal
0.3
696
Normal
0.3
981
Tumor
0.3
546
Normal
0.3
954
Normal
0.2
967
Tumor
0.2
664
Normal
0.2
695
Tumor
0.2
538
Normal
0.2
1032
Normal
0.2
713
Tumor
0.2
874
Normal
0.2
574
Normal
0.2
963
Tumor
0.2
313
Tumor
0.2
786
Normal
0.2
311
Tumor
0.2
515
Tumor
0.2
434
Normal
0.2
394
Normal
0.2
958
Normal
0.2
388
Normal
0.2
488
Normal
0.2
564
Normal
0.2
716
Normal
0.2
513
Tumor
0.2
975
Tumor
0.2
938
Normal
0.2
966
Normal
0.2
212
Normal
0.2
686
Normal
0.2
778
Normal
0.2
618
Normal
0.1
1042
Normal
0.1
426
Normal
0.1
435
Tumor
0.1
461
Tumor
0.1
722
Normal
0.1
976
Normal
0.1
1022
Normal
0.1
392
Normal
0.1
433
Tumor
0.1
636
Normal
0.1
873
Tumor
0.1
533
Tumor
0.1
755
Tumor
0.1
968
Normal
0.0
231
Tumor
0.0
865
Tumor
0.0
498
Normal
0.0
785
Tumor
0.0
537
Tumor
0.0
428
Normal
0.0
937
Tumor
0.0
228
Normal
0.0
477
Tumor
0.0
446
Normal
0.0
616
Normal
0.0
628
Normal
0.0
527
Tumor
0.0
413
Tumor
0.0
297
Tumor
0.0
268
Normal
0.0
285
Tumor
0.0
672
Normal
0.0
951
Tumor
0.0
517
Tumor
0.0
443
Tumor
0.0
424
Normal
0.0
627
Tumor
-0.1
955
Tumor
-0.1
922
Normal
-0.1
267
Tumor
-0.1
914
Normal
-0.1
396
Normal
-0.1
883
Tumor
-0.1
494
Normal
-0.1
953
Tumor
-0.1
1021
Tumor
-0.1
918
Normal
-0.1
331
Tumor
-0.1
1028
Normal
-0.1
272
Normal
-0.1
545
Tumor
-0.1
444
Normal
-0.1
567
Tumor
-0.1
814
Normal
-0.1
414
Normal
-0.2
1025
Tumor
-0.2
952
Normal
-0.2
553
Tumor
-0.2
944
Normal
-0.2
436
Normal
-0.2
387
Tumor
-0.2
492
Normal
-0.2
432
Normal
-0.2
493
Tumor
-0.2
881
Tumor
-0.2
926
Normal
-0.2
662
Normal
-0.2
642
Normal
-0.2
386
Normal
-0.2
483
Tumor
-0.2
813
Tumor
-0.2
1031
Tumor
-0.3
422
Normal
-0.3
525
Tumor
-0.3
745
Tumor
-0.3
427
Tumor
-0.3
956
Normal
-0.3
661
Tumor
-0.3
472
Normal
-0.3
257
Tumor
-0.3
641
Tumor
-0.3
481
Tumor
-0.4
227
Tumor
-0.4
615
Tumor
-0.4
617
Tumor
-0.4
286
Normal
-0.4
877
Tumor
-0.4
385
Tumor
-0.4
232
Normal
-0.4
262
Normal
-0.4
665
Tumor
-0.5
474
Normal
-0.5
1027
Tumor
-0.5
491
Tumor
-0.5
983
Tumor
-0.5
258
Normal
-0.5
462
Normal
-0.6
283
Tumor
-0.6
391
Tumor
-0.7
421
Tumor
-0.7
671
Tumor
-0.8
393
Tumor
-0.8
715
Tumor
-0.9
482
Normal
-0.9
685
Tumor
-1.2
351
Tumor
N/A
352
Normal
N/A
111
Normal
N/A
353
Tumor
N/A
112
Tumor
N/A
354
Normal
N/A
113
Tumor
N/A
355
Tumor
N/A
114
Normal
N/A
356
Normal
N/A
357
Tumor
N/A
358
Normal
N/A
361
Tumor
N/A
362
Normal
N/A
363
Tumor
N/A
364
Normal
N/A
123
Tumor
N/A
365
Tumor
N/A
124
Normal
N/A
366
Normal
N/A
125
Tumor
N/A
367
Tumor
N/A
126
Normal
N/A
368
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
131
Tumor
N/A
132
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
135
Tumor
N/A
136
Normal
N/A
137
Tumor
N/A
138
Normal
N/A
815
Tumor
N/A
816
Normal
N/A
817
Tumor
N/A
818
Normal
N/A
141
Tumor
N/A
383
Tumor
N/A
142
Normal
N/A
384
Normal
N/A
145
Tumor
N/A
146
Normal
N/A
147
Tumor
N/A
148
Normal
N/A
823
Tumor
N/A
824
Normal
N/A
161
Tumor
N/A
162
Normal
N/A
723
Tumor
N/A
724
Normal
N/A
727
Tumor
N/A
728
Normal
N/A
1044
Normal
N/A
1043
Tumor
N/A
171
Tumor
N/A
172
Normal
N/A
851
Tumor
N/A
852
Normal
N/A
857
Tumor
N/A
737
Tumor
N/A
858
Normal
N/A
738
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
741
Tumor
N/A
742
Normal
N/A
1046
Normal
N/A
743
Tumor
N/A
1045
Tumor
N/A
744
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
535
Tumor
N/A
415
Tumor
N/A
536
Normal
N/A
416
Normal
N/A
447
Tumor
N/A
327
Tumor
N/A
448
Normal
N/A
328
Normal
N/A
451
Tumor
N/A
452
Normal
N/A
213
Tumor
N/A
455
Tumor
N/A
697
Tumor
N/A
214
Normal
N/A
456
Normal
N/A
698
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
341
Tumor
N/A
221
Tumor
N/A
342
Normal
N/A
463
Tumor
N/A
222
Normal
N/A
343
Tumor
N/A
464
Normal
N/A
344
Normal
N/A
465
Tumor
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
