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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PRKRA is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
40.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
30.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
24.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
23.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
23.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
23.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
22.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
21.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
21.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
20.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
19.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
18.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
18.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
18.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
17.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
17.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
17.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
16.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
16.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
16.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
15.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
15.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
15.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
15.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
15.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
15.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
15.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
14.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
14.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
14.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
14.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
14.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
13.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
13.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
13.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
13.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
12.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
12.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
12.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
12.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
12.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
12.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
12.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
12.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
12.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
12.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
11.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
11.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
11.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
11.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
11.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
11.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
11.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
11.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
11.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
11.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
11.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
11.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
11.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
11.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
11.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
11.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
11.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
10.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
10.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
10.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
10.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
10.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
10.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
10.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
10.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
10.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
10.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
10.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
10.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
10.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
10.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
10.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
10.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
10.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
9.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
9.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
9.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
9.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
9.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
9.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
9.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
9.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
9.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
9.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
9.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
9.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
9.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
9.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
9.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
9.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
9.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
9.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
9.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
9.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
9.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
8.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
8.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
8.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
8.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
8.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
8.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
8.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
8.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
8.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
8.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
8.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
8.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
8.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
8.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
8.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
8.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
8.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
8.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
8.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
8.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
8.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
8.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
8.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
8.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
8.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
8.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
8.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
7.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
7.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
7.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
7.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
7.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
7.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
7.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
7.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
7.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
7.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
7.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
7.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
7.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
7.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
7.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
7.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
7.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
7.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
7.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
7.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
7.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
7.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
7.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
7.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
7.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
7.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
7.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
7.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
6.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
6.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
6.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
6.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
6.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
6.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
6.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
6.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
6.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
6.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
6.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
6.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
6.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
6.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
6.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
6.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
6.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
6.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
6.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
6.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
6.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
6.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
6.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
6.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
6.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
6.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
6.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
6.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
6.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
6.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
6.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
6.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
6.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
6.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
6.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
5.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
5.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
5.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
5.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
5.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
5.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
5.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
5.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
5.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
5.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
5.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
5.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
5.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
5.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
5.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
5.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
5.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
5.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
5.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
5.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
5.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
5.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
5.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
5.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
5.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
5.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
4.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
4.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
4.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
4.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
4.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
4.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
4.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
4.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
4.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
4.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
4.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
4.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
3.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
3.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
3.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PRKRA is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.6
Number of samples
231
Samples
Sample
Description
TPM
DO48682
0 years, female, NA, stage:3, dead, 120 days
54.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
42.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
38.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
36.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
33.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
32.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
31.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
30.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
28.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
27.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
27.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
27.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
26.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
26.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
26.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
25.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
25.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
25.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
24.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
24.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
24.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
23.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
23.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
23.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
23.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
22.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
22.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
22.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
22.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
22.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
21.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
21.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
20.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
20.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
20.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
20.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
20.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
20.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
20.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
20.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
20.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
19.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
19.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
19.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
19.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
19.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
19.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
19.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
19.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
18.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
18.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
18.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
18.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
18.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
18.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
18.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
18.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
17.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
17.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
17.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
17.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
17.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
17.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
17.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
17.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
17.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
17.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
17.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
17.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
17.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
16.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
16.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
16.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
16.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
16.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
16.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
16.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
16.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
16.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
16.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
16.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
16.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
16.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
15.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
15.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
15.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
15.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
15.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
15.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
15.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
15.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
15.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
15.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
15.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
15.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
15.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
15.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
15.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
14.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
14.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
14.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
14.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
14.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
14.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
14.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
14.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
14.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
14.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
14.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
14.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
14.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
14.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
14.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
14.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
14.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
14.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
14.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
14.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
14.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
14.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
13.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
13.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
13.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
13.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
13.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
13.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
13.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
13.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
13.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
13.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
13.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
13.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
13.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
13.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
13.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
13.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
13.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
13.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
13.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
13.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
13.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
13.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
13.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
13.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
12.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
12.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
12.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
12.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
12.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
12.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
12.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
12.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
12.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
12.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
12.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
12.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
12.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
12.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
12.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
12.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
12.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
12.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
12.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
12.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
12.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
12.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
12.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
11.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
11.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
11.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
11.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
11.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
11.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
11.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
11.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
11.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
11.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
11.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
11.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
11.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
11.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
11.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
11.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
11.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
11.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
11.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
11.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
11.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
11.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
10.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
10.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
10.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
10.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
10.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
10.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
10.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
10.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
10.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
10.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
10.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
9.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
9.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
9.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
9.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
9.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
9.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
9.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
9.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
9.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
9.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
9.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
9.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
8.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
8.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
8.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
8.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
8.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
8.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
7.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
7.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
7.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
7.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
6.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
6.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
5.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
743
Tumor
1.5
517
Tumor
1.1
463
Tumor
1.0
525
Tumor
1.0
567
Tumor
0.8
537
Tumor
0.8
131
Tumor
0.7
967
Tumor
0.7
311
Tumor
0.6
211
Tumor
0.6
877
Tumor
0.6
385
Tumor
0.6
963
Tumor
0.6
125
Tumor
0.6
427
Tumor
0.6
357
Tumor
0.6
661
Tumor
0.6
343
Tumor
0.6
445
Tumor
0.6
283
Tumor
0.6
917
Tumor
0.5
313
Tumor
0.5
393
Tumor
0.5
455
Tumor
0.5
737
Tumor
0.5
571
Tumor
0.5
297
Tumor
0.4
815
Tumor
0.4
387
Tumor
0.4
943
Tumor
0.4
114
Normal
0.4
535
Tumor
0.4
965
Tumor
0.4
431
Tumor
0.4
481
Tumor
0.4
983
Tumor
0.4
977
Tumor
0.4
813
Tumor
0.4
161
Tumor
0.3
1031
Tumor
0.3
421
Tumor
0.3
135
Tumor
0.3
881
Tumor
0.3
478
Normal
0.3
444
Normal
0.3
367
Tumor
0.3
1021
Tumor
0.3
713
Tumor
0.3
487
Tumor
0.3
471
Tumor
0.3
883
Tumor
0.3
671
Tumor
0.3
527
Tumor
0.3
697
Tumor
0.3
641
Tumor
0.2
491
Tumor
0.2
331
Tumor
0.2
573
Tumor
0.2
721
Tumor
0.2
492
Normal
0.2
477
Tumor
0.2
724
Normal
0.2
425
Tumor
0.2
192
Normal
0.2
516
Normal
0.2
814
Normal
0.2
1013
Tumor
0.2
285
Tumor
0.2
953
Tumor
0.2
912
Normal
0.2
483
Tumor
0.2
975
Tumor
0.2
365
Tumor
0.2
447
Tumor
0.2
474
Normal
0.2
984
Normal
0.2
391
Tumor
0.2
147
Tumor
0.2
944
Normal
0.2
128
Normal
0.2
127
Tumor
0.2
978
Normal
0.2
386
Normal
0.1
574
Normal
0.1
524
Normal
0.1
823
Tumor
0.1
111
Normal
0.1
954
Normal
0.1
312
Normal
0.1
434
Normal
0.1
268
Normal
0.1
126
Normal
0.1
461
Tumor
0.1
141
Tumor
0.1
213
Tumor
0.1
468
Normal
0.1
1045
Tumor
0.1
388
Normal
0.1
327
Tumor
0.1
383
Tumor
0.1
914
Normal
0.1
956
Normal
0.1
515
Tumor
0.1
878
Normal
0.1
1042
Normal
0.1
271
Tumor
0.1
533
Tumor
0.1
493
Tumor
0.1
145
Tumor
0.1
375
Tumor
0.1
572
Normal
0.1
716
Normal
0.1
884
Normal
0.1
413
Tumor
0.1
284
Normal
0.1
563
Tumor
0.1
146
Normal
0.1
568
Normal
0.1
392
Normal
0.1
873
Tumor
0.1
966
Normal
0.1
1041
Tumor
0.1
727
Tumor
0.1
224
Normal
0.1
1028
Normal
0.1
124
Normal
0.1
142
Normal
0.1
686
Normal
0.1
852
Normal
0.1
982
Normal
0.1
138
Normal
0.1
113
Tumor
0.1
662
Normal
0.1
278
Normal
0.1
412
Normal
0.1
745
Tumor
0.1
384
Normal
0.1
695
Tumor
0.1
863
Tumor
0.1
112
Tumor
0.1
272
Normal
0.1
538
Normal
0.0
351
Tumor
0.0
452
Normal
0.0
394
Normal
0.0
344
Normal
0.0
466
Normal
0.0
938
Normal
0.0
354
Normal
0.0
368
Normal
0.0
817
Tumor
0.0
696
Normal
0.0
523
Tumor
0.0
923
Tumor
0.0
921
Tumor
0.0
916
Normal
0.0
958
Normal
0.0
741
Tumor
0.0
472
Normal
0.0
672
Normal
0.0
738
Normal
0.0
361
Tumor
0.0
433
Tumor
0.0
546
Normal
0.0
518
Normal
0.0
358
Normal
0.0
228
Normal
0.0
857
Tumor
0.0
422
Normal
0.0
698
Normal
0.0
494
Normal
0.0
952
Normal
0.0
785
Tumor
0.0
446
Normal
0.0
231
Tumor
0.0
534
Normal
0.0
428
Normal
0.0
911
Tumor
0.0
473
Tumor
0.0
352
Normal
0.0
456
Normal
0.0
913
Tumor
0.0
867
Tumor
0.0
363
Tumor
0.0
951
Tumor
0.0
957
Tumor
0.0
627
Tumor
0.0
968
Normal
0.0
423
Tumor
0.0
882
Normal
0.0
976
Normal
0.0
744
Normal
0.0
498
Normal
0.0
132
Normal
0.0
864
Normal
0.0
426
Normal
0.0
362
Normal
0.0
874
Normal
0.0
484
Normal
0.0
137
Tumor
0.0
664
Normal
0.0
212
Normal
0.0
557
Tumor
0.0
536
Normal
0.0
728
Normal
-0.1
924
Normal
-0.1
1015
Tumor
-0.1
396
Normal
-0.1
482
Normal
-0.1
526
Normal
-0.1
136
Normal
-0.1
298
Normal
-0.1
666
Normal
-0.1
1014
Normal
-0.1
188
Normal
-0.1
955
Tumor
-0.1
636
Normal
-0.1
1032
Normal
-0.1
564
Normal
-0.1
464
Normal
-0.1
261
Tumor
-0.1
214
Normal
-0.1
262
Normal
-0.1
786
Normal
-0.1
355
Tumor
-0.1
528
Normal
-0.1
818
Normal
-0.1
554
Normal
-0.1
714
Normal
-0.1
366
Normal
-0.1
1025
Tumor
-0.1
742
Normal
-0.1
558
Normal
-0.1
416
Normal
-0.1
415
Tumor
-0.1
1022
Normal
-0.1
723
Tumor
-0.1
462
Normal
-0.1
424
Normal
-0.1
553
Tumor
-0.1
232
Normal
-0.1
185
Tumor
-0.1
395
Tumor
-0.1
617
Tumor
-0.1
187
Tumor
-0.1
497
Tumor
-0.1
258
Normal
-0.1
648
Normal
-0.1
918
Normal
-0.1
545
Tumor
-0.1
435
Tumor
-0.1
332
Normal
-0.1
1026
Normal
-0.1
376
Normal
-0.1
448
Normal
-0.1
414
Normal
-0.1
277
Tumor
-0.1
342
Normal
-0.1
1043
Tumor
-0.1
778
Normal
-0.1
715
Tumor
-0.1
746
Normal
-0.1
866
Normal
-0.2
314
Normal
-0.2
436
Normal
-0.2
411
Tumor
-0.2
286
Normal
-0.2
816
Normal
-0.2
981
Tumor
-0.2
451
Tumor
-0.2
756
Normal
-0.2
964
Normal
-0.2
685
Tumor
-0.2
488
Normal
-0.2
195
Tumor
-0.2
722
Normal
-0.2
443
Tumor
-0.2
868
Normal
-0.2
616
Normal
-0.2
777
Tumor
-0.2
1044
Normal
-0.2
665
Tumor
-0.2
514
Normal
-0.2
925
Tumor
-0.2
824
Normal
-0.2
862
Normal
-0.2
663
Tumor
-0.2
1046
Normal
-0.2
196
Normal
-0.2
221
Tumor
-0.2
223
Tumor
-0.2
1016
Normal
-0.2
922
Normal
-0.2
467
Tumor
-0.2
647
Tumor
-0.2
257
Tumor
-0.2
353
Tumor
-0.2
267
Tumor
-0.2
628
Normal
-0.2
618
Normal
-0.3
171
Tumor
-0.3
926
Normal
-0.3
364
Normal
-0.3
186
Normal
-0.3
356
Normal
-0.3
1027
Tumor
-0.3
861
Tumor
-0.3
148
Normal
-0.3
432
Normal
-0.3
172
Normal
-0.3
465
Tumor
-0.3
615
Tumor
-0.3
858
Normal
-0.3
218
Normal
-0.3
191
Tumor
-0.3
227
Tumor
-0.3
328
Normal
-0.3
162
Normal
-0.3
915
Tumor
-0.4
341
Tumor
-0.4
851
Tumor
-0.4
642
Normal
-0.4
222
Normal
-0.4
755
Tumor
-0.4
217
Tumor
-0.4
635
Tumor
-0.5
513
Tumor
-0.5
937
Tumor
-0.6
123
Tumor
-0.6
865
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
