MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:27.6 nTPM
HPA Brain:9.2 nTPM
GTEx:27.6 nTPM
FANTOM5:34.6 Scaled Tags Per Million
Pig:22.0 nTPM
Mouse:36.4 nTPM
Allen mouse:1.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 9.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 6.2
2411 Female, age 72, unknown 11.0
2019 Male, age 18, unknown 9.5
1870 Female, age 42, unknown 8.0
1827 Male, age 72, unknown 7.2
1833 Male, age 53, unknown 6.2
1830 Male, age 51, unknown 5.2
2219 Male, age 76, both hemispheres 5.1
2828 Female, age 72, unknown 4.3
2586 Male, age 75, left hemisphere 2.7
2666 Male, age 74, left hemisphere 2.6
Dorsal raphe nucleus
nTPM: 8.1
2298 Female, age 72, unknown 13.7
2750 Male, age 76, both hemispheres 9.1
2016 Female, age 72, unknown 6.4
1828 Male, age 53, unknown 5.9
2047 Male, age 72, unknown 5.2
Inferior colliculus
nTPM: 8.8
2097 Female, age 72, unknown 15.1
1890 Male, age 53, unknown 6.9
1848 Female, age 42, unknown 6.7
2849 Male, age 72, unknown 6.5
Median raphe nucleus
nTPM: 6.7
2220 Male, age 76, midline 6.7
Periaquaductal grey, anterior
nTPM: 7.2
2502 Female, age 75, unknown 8.2
1947 Male, age 18, unknown 7.1
1795 Male, age 51, unknown 6.3
Periaquaductal grey, dorsal
nTPM: 6.4
2850 Male, age 76, both hemispheres 7.9
1840 Male, age 53, unknown 7.3
1831 Male, age 72, unknown 5.5
2464 Female, age 72, unknown 4.8
Periaquaductal grey, lateral
nTPM: 9.2
2272 Male, age 74, both hemispheres 15.5
2053 Male, age 18, unknown 6.2
2140 Male, age 76, both hemispheres 6.0
Pretectal area
nTPM: 8.5
2224 Female, age 72, unknown 12.8
2273 Male, age 74, both hemispheres 12.1
1817 Female, age 42, unknown 10.3
2007 Male, age 72, unknown 9.6
1816 Male, age 51, unknown 9.4
1815 Male, age 53, unknown 9.1
1944 Female, age 72, unknown 9.1
2316 Male, age 76, right hemisphere 6.6
2667 Female, age 75, unknown 5.5
2825 Male, age 18, unknown 5.5
2407 Male, age 75, both hemispheres 3.5
Red nucleus
nTPM: 7.3
1821 Female, age 72, unknown 11.8
2725 Female, age 75, unknown 11.1
2785 Male, age 18, unknown 8.3
2823 Male, age 76, right hemisphere 8.2
1904 Male, age 53, unknown 7.7
1865 Male, age 51, unknown 7.6
2503 Female, age 72, unknown 7.0
2769 Male, age 72, unknown 7.0
1954 Female, age 42, unknown 6.9
2227 Male, age 72, unknown 6.4
2588 Male, age 74, left hemisphere 2.6
2584 Male, age 75, left hemisphere 2.4
Substantia nigra
nTPM: 6.0
2409 Female, age 72, unknown 9.2
1889 Female, age 72, unknown 9.1
2241 Male, age 72, unknown 8.6
1851 Male, age 51, unknown 7.9
1941 Male, age 53, unknown 6.9
1916 Female, age 42, unknown 6.4
2699 Male, age 18, unknown 4.9
2590 Female, age 75, unknown 3.0
2583 Male, age 75, right hemisphere 2.3
2665 Male, age 74, both hemispheres 2.1
Superior colliculus
nTPM: 7.7
2587 Male, age 74, left hemisphere 13.0
2668 Female, age 75, unknown 9.5
1913 Female, age 42, unknown 9.0
1895 Male, age 76, right hemisphere 7.7
2261 Male, age 18, unknown 7.7
2087 Female, age 72, unknown 7.5
1796 Male, age 53, unknown 6.8
1839 Male, age 51, unknown 6.6
1995 Male, age 72, unknown 6.5
2664 Male, age 75, both hemispheres 2.4
Ventral tegmental area
nTPM: 8.3
2410 Female, age 72, unknown 15.3
2223 Female, age 72, unknown 7.9
2218 Male, age 76, both hemispheres 7.8
1915 Female, age 42, unknown 6.9
2021 Male, age 53, unknown 6.1
1942 Male, age 51, unknown 5.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 27.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 27.6
Samples: 139

Max nTPM: 46.0
Min nTPM: 16.2
Std nTPM: 4.9
Median nTPM: 27.1
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 46.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 42.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 40.0
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 39.6
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 38.4
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 38.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 35.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 35.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 35.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 35.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 35.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 34.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 34.6
FF:10158-103A5 76 years, female 34.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 22.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 18.0
Samples: 4

Max nTPM: 26.7
Min nTPM: 11.0
Sample A Female 26.7
Sample B Female 16.5
Sample C Male 17.9
Sample D Male 11.0
Midbrain
nTPM: 20.1
Samples: 4

Max nTPM: 27.0
Min nTPM: 13.5
Sample A Female 13.5
Sample B Female 17.3
Sample C Male 22.7
Sample D Male 27.0
Periaqueductal gray
nTPM: 18.7
Samples: 3

Max nTPM: 22.8
Min nTPM: 16.3
Sample B Female 16.3
Sample C Male 22.8
Sample D Male 17.0
Superior colliculi
nTPM: 22.0
Samples: 4

Max nTPM: 28.1
Min nTPM: 18.9
Sample A Female 28.1
Sample B Female 19.1
Sample C Male 21.9
Sample D Male 18.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 36.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 36.4
Samples: 4

Max nTPM: 37.8
Min nTPM: 34.6
Sample A Male 37.8
Sample B Male 37.6
Sample C Female 34.6
Sample D Female 35.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.4
564761 Antisense, RP_040826_01_D06, Mouse strain C57BL/6J (56 days, male) 1.4

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